Strain Fitness in Rahnella sp. WP5 around EX31_RS04740

Experiment: Ammonium chloride (N); ShewMM media; shaking

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ammonium chloride (N); ShewMM media; shaking
63,307	+				-1.0
63,307	+				+1.4
63,382	+				+1.3
63,382	+				+1.3
63,382	+				+0.1
63,383	-				-1.4
63,383	-				+0.6
63,383	-				+1.1
63,383	-				-0.7
63,383	-				-0.3
63,415	+				+0.1
63,415	+				+0.8
63,415	+				+0.7
63,415	+				-0.7
63,416	-				-0.5
63,416	-				-0.5
63,416	-				-0.6
63,419	+				-0.8
63,419	+				+0.1
63,420	-				+0.2
63,420	-				-0.8
63,420	-				-1.1
63,420	-				+0.6
63,420	-				+0.4
63,420	-				+0.4
63,428	-				-0.8
63,428	-				+1.3
63,452	+				+0.1
63,452	+				+0.6
63,452	+				-0.7
63,452	+				+0.3
63,452	+				-1.8
63,470	+				+1.5
63,470	+				+0.9
63,471	-				+0.5
63,471	-				+1.6
63,483	+				-0.0
63,484	-				+0.1
63,509	+				+0.9
63,509	+				-0.1
63,584	+		EX31_RS04735	0.18	+0.5
63,584	+		EX31_RS04735	0.18	+1.3
63,585	-		EX31_RS04735	0.18	-2.4
63,585	-		EX31_RS04735	0.18	+0.1
63,585	-		EX31_RS04735	0.18	+0.5
63,619	+		EX31_RS04735	0.22	+0.2
63,620	-		EX31_RS04735	0.23	-0.3
63,620	-		EX31_RS04735	0.23	+1.0
63,666	+		EX31_RS04735	0.28	-0.1
63,667	-		EX31_RS04735	0.28	+0.5
63,678	-		EX31_RS04735	0.29	+1.3
63,678	-		EX31_RS04735	0.29	-1.2
63,707	+		EX31_RS04735	0.33	-1.2
63,708	-		EX31_RS04735	0.33	+0.7
63,780	+		EX31_RS04735	0.41	-0.0
63,781	-		EX31_RS04735	0.41	+0.4
63,781	-		EX31_RS04735	0.41	-0.0
63,815	+		EX31_RS04735	0.45	+0.1
63,815	+		EX31_RS04735	0.45	+1.0
63,815	+		EX31_RS04735	0.45	-0.1
63,815	+		EX31_RS04735	0.45	-0.5
63,890	+		EX31_RS04735	0.54	+0.5
63,891	-		EX31_RS04735	0.54	-0.3
64,084	-		EX31_RS04735	0.76	+0.7
64,084	-		EX31_RS04735	0.76	+0.3
64,084	-		EX31_RS04735	0.76	-1.0
64,158	+		EX31_RS04735	0.85	-0.9
64,159	-		EX31_RS04735	0.85	-0.3
64,159	-		EX31_RS04735	0.85	-0.1
64,181	-		EX31_RS04735	0.88	+0.5
64,181	-		EX31_RS04735	0.88	+0.7
64,181	-		EX31_RS04735	0.88	-0.3
64,181	-		EX31_RS04735	0.88	-0.6
64,181	-		EX31_RS04735	0.88	-1.8
64,203	+				+0.8
64,203	+				+0.3
64,262	+				-0.3
64,273	-				-0.4
64,292	+				-0.6
64,373	+		EX31_RS04740	0.16	+0.3
64,373	+		EX31_RS04740	0.16	+1.3
64,373	+		EX31_RS04740	0.16	-0.4
64,373	+		EX31_RS04740	0.16	+0.1
64,373	+		EX31_RS04740	0.16	-0.8
64,373	+		EX31_RS04740	0.16	+0.0
64,373	+		EX31_RS04740	0.16	+0.8
64,373	+		EX31_RS04740	0.16	-0.1
64,373	+		EX31_RS04740	0.16	-2.0
64,373	+		EX31_RS04740	0.16	+0.7
64,374	-		EX31_RS04740	0.16	+0.9
64,374	-		EX31_RS04740	0.16	-0.6
64,374	-		EX31_RS04740	0.16	-1.4
64,374	-		EX31_RS04740	0.16	+0.1
64,374	-		EX31_RS04740	0.16	+0.1
64,374	-		EX31_RS04740	0.16	+1.1
64,446	+		EX31_RS04740	0.29	+1.0
64,446	+		EX31_RS04740	0.29	+0.1
64,446	+		EX31_RS04740	0.29	-0.3
64,446	+		EX31_RS04740	0.29	-0.2
64,446	+		EX31_RS04740	0.29	+0.5
64,446	+		EX31_RS04740	0.29	+1.6
64,447	-		EX31_RS04740	0.29	+0.1
64,466	+		EX31_RS04740	0.32	-0.2
64,467	-		EX31_RS04740	0.33	+0.8
64,467	-		EX31_RS04740	0.33	-1.0
64,544	+		EX31_RS04740	0.46	-0.4
64,545	-		EX31_RS04740	0.46	-1.0
64,545	-		EX31_RS04740	0.46	-0.4
64,545	-		EX31_RS04740	0.46	-1.1
64,554	+		EX31_RS04740	0.48	-0.7
64,613	+		EX31_RS04740	0.59	-0.4
64,614	-		EX31_RS04740	0.59	+0.0
64,614	-		EX31_RS04740	0.59	+0.1
64,614	-		EX31_RS04740	0.59	-0.2
64,654	+		EX31_RS04740	0.66	-0.3
64,654	+		EX31_RS04740	0.66	-0.2
64,654	+		EX31_RS04740	0.66	-0.1
64,676	+		EX31_RS04740	0.70	+0.5
64,676	+		EX31_RS04740	0.70	-0.4
64,829	+				+0.6
64,830	-				-0.3
64,830	-				+0.3
64,850	+				+0.1
64,851	-				-0.1
64,867	-				+0.2
64,867	-				-0.9
64,988	+		EX31_RS04745	0.17	-0.2
64,988	+		EX31_RS04745	0.17	-0.4
64,988	+		EX31_RS04745	0.17	+0.6
64,988	+		EX31_RS04745	0.17	-0.4
64,988	+		EX31_RS04745	0.17	+0.6
64,989	-		EX31_RS04745	0.17	-0.9
64,989	-		EX31_RS04745	0.17	-0.1
64,989	-		EX31_RS04745	0.17	+0.9
64,989	-		EX31_RS04745	0.17	+0.1
64,989	-		EX31_RS04745	0.17	+0.2
65,021	+		EX31_RS04745	0.21	+0.8
65,021	+		EX31_RS04745	0.21	+0.5
65,022	-		EX31_RS04745	0.21	+0.2
65,215	-		EX31_RS04745	0.44	-0.4
65,287	-		EX31_RS04745	0.53	+0.2
65,382	+		EX31_RS04745	0.64	+0.5
65,442	+		EX31_RS04745	0.71	-0.1
65,442	+		EX31_RS04745	0.71	+0.5
65,442	+		EX31_RS04745	0.71	-1.2
65,442	+		EX31_RS04745	0.71	-0.6
65,442	+		EX31_RS04745	0.71	+0.5
65,442	+		EX31_RS04745	0.71	+0.3
65,443	-		EX31_RS04745	0.71	+0.5
65,443	-		EX31_RS04745	0.71	-0.3
65,443	-		EX31_RS04745	0.71	-1.2
65,443	-		EX31_RS04745	0.71	+0.4
65,443	-		EX31_RS04745	0.71	-0.6
65,443	-		EX31_RS04745	0.71	-0.3
65,445	+		EX31_RS04745	0.71	+0.1
65,445	+		EX31_RS04745	0.71	+1.3
65,445	+		EX31_RS04745	0.71	-0.9
65,445	+		EX31_RS04745	0.71	+1.2
65,445	+		EX31_RS04745	0.71	-2.0
65,445	+		EX31_RS04745	0.71	+0.0
65,445	+		EX31_RS04745	0.71	+0.8
65,445	+		EX31_RS04745	0.71	+0.4
65,445	+		EX31_RS04745	0.71	+0.5
65,445	+		EX31_RS04745	0.71	-1.3
65,445	+		EX31_RS04745	0.71	+0.0
65,446	-		EX31_RS04745	0.71	-0.3
65,446	-		EX31_RS04745	0.71	-0.1
65,446	-		EX31_RS04745	0.71	+0.3
65,446	-		EX31_RS04745	0.71	-0.1
65,446	-		EX31_RS04745	0.71	-0.6
65,446	-		EX31_RS04745	0.71	+0.2
65,446	-		EX31_RS04745	0.71	+0.0
65,446	-		EX31_RS04745	0.71	-0.1
65,446	-		EX31_RS04745	0.71	-0.0
65,464	+		EX31_RS04745	0.74	+0.5
65,464	+		EX31_RS04745	0.74	-0.5
65,465	-		EX31_RS04745	0.74	+0.4
65,465	-		EX31_RS04745	0.74	+0.0
65,465	-		EX31_RS04745	0.74	+0.1
65,509	+		EX31_RS04745	0.79	+0.9
65,509	+		EX31_RS04745	0.79	+0.3
65,510	-		EX31_RS04745	0.79	-0.2
65,510	-		EX31_RS04745	0.79	+0.7
65,539	+		EX31_RS04745	0.82	-0.2
65,539	+		EX31_RS04745	0.82	-0.5
65,539	+		EX31_RS04745	0.82	+1.1
65,539	+		EX31_RS04745	0.82	-0.6
65,539	+		EX31_RS04745	0.82	+1.0
65,539	+		EX31_RS04745	0.82	+0.9
65,539	+		EX31_RS04745	0.82	-0.3
65,539	+		EX31_RS04745	0.82	-0.1
65,539	+		EX31_RS04745	0.82	+2.3
65,539	+		EX31_RS04745	0.82	-0.6
65,539	+		EX31_RS04745	0.82	+0.8
65,539	+		EX31_RS04745	0.82	-1.2
65,539	+		EX31_RS04745	0.82	+0.2
65,539	+		EX31_RS04745	0.82	+0.1
65,539	+		EX31_RS04745	0.82	+0.2
65,539	+		EX31_RS04745	0.82	-1.1
65,539	+		EX31_RS04745	0.82	-0.8
65,539	+		EX31_RS04745	0.82	+0.2
65,539	+		EX31_RS04745	0.82	+0.1
65,539	+		EX31_RS04745	0.82	+0.1
65,540	-		EX31_RS04745	0.83	+0.4
65,540	-		EX31_RS04745	0.83	+0.1
65,540	-		EX31_RS04745	0.83	+2.3
65,540	-		EX31_RS04745	0.83	-0.7
65,540	-		EX31_RS04745	0.83	+0.0
65,540	-		EX31_RS04745	0.83	-0.0
65,540	-		EX31_RS04745	0.83	+0.6
65,540	-		EX31_RS04745	0.83	-0.8
65,540	-		EX31_RS04745	0.83	-1.3
65,540	-		EX31_RS04745	0.83	-0.5
65,540	-		EX31_RS04745	0.83	+1.3
65,540	-		EX31_RS04745	0.83	+0.4
65,540	-		EX31_RS04745	0.83	+0.4
65,540	-		EX31_RS04745	0.83	+0.2
65,540	-		EX31_RS04745	0.83	-0.8
65,540	-		EX31_RS04745	0.83	-0.1
65,540	-		EX31_RS04745	0.83	+0.7
65,540	-		EX31_RS04745	0.83	+0.0
65,540	-		EX31_RS04745	0.83	-0.6
65,540	-		EX31_RS04745	0.83	+1.0
65,540	-		EX31_RS04745	0.83	-0.1
65,540	-		EX31_RS04745	0.83	-0.5
65,540	-		EX31_RS04745	0.83	-0.2
65,540	-		EX31_RS04745	0.83	-0.1
65,540	-		EX31_RS04745	0.83	-0.1
65,540	-		EX31_RS04745	0.83	-1.6
65,540	-		EX31_RS04745	0.83	-0.1
65,540	-		EX31_RS04745	0.83	+0.1
65,540	-		EX31_RS04745	0.83	+0.1
65,540	-		EX31_RS04745	0.83	+0.1
65,543	-		EX31_RS04745	0.83	+1.5
65,543	-		EX31_RS04745	0.83	+0.3
65,543	-		EX31_RS04745	0.83	+0.5
65,593	+		EX31_RS04745	0.89	+0.3
65,593	+		EX31_RS04745	0.89	-0.6
65,593	+		EX31_RS04745	0.89	+0.5
65,593	+		EX31_RS04745	0.89	+0.1
65,593	+		EX31_RS04745	0.89	+0.6
65,593	+		EX31_RS04745	0.89	-0.6
65,594	-		EX31_RS04745	0.89	+0.6
65,594	-		EX31_RS04745	0.89	+0.3
65,594	-		EX31_RS04745	0.89	+0.2
65,594	-		EX31_RS04745	0.89	-1.0
65,594	-		EX31_RS04745	0.89	+0.1
65,653	-				-0.9
65,662	+				-0.3
65,662	+				+0.4
65,662	+				+0.4
65,663	-				+0.9
65,663	-				-0.2
65,663	-				+0.1
65,677	+				-1.2
65,678	-				-2.1
65,712	+				+0.6
65,713	-				+0.5
65,716	+				+1.3
65,717	-				+0.0
65,717	-				+0.7
65,726	+				+0.3
65,726	+				-1.0
65,726	+				-0.0
65,726	+				+0.4
65,726	+				-0.6
65,726	+				-0.1
65,726	+				+0.4
65,726	+				+0.2
65,726	+				+0.6
65,727	-				+1.1
65,727	-				-0.2
65,749	+				-0.0
65,749	+				+0.6
65,749	+				-0.2
65,749	+				+0.2
65,749	+				+0.0
65,750	-				-0.5
65,750	-				-1.9
65,750	-				+0.2
65,751	+				-0.1
65,751	+				+0.6
65,751	+				+0.2
65,751	+				+0.6
65,751	+				+1.0
65,751	+				-0.3
65,751	+				-0.0
65,751	+				-0.4
65,751	+				-1.3
65,751	+				+0.3
65,751	+				-0.7
65,751	+				-0.9
65,751	+				+0.1
65,751	+				-1.3
65,751	+				+0.5
65,751	+				-1.2
65,751	+				+0.3
65,751	+				+0.3
65,751	+				-0.2
65,751	+				-0.6
65,751	+				-0.0
65,751	+				-0.4
65,752	-				+0.0
65,752	-				-1.0
65,752	-				-1.3
65,752	-				-0.3
65,752	-				-0.0
65,752	-				+0.4
65,752	-				+0.1
65,752	-				-0.1
65,752	-				-1.0
65,752	-				+0.8
65,752	-				-1.3
65,752	-				-1.0
65,752	-				+0.1
65,754	+				-0.6
65,754	+				-0.2
65,769	+				+0.4
65,769	+				+0.5
65,769	+				-0.2
65,769	+				+0.5
65,770	-				+0.5
65,771	+				-0.2
65,771	+				-0.6
65,772	-				-1.1
65,791	+				+1.2
65,791	+				+0.1
65,791	+				+0.4
65,791	+				-2.1
65,791	+				+0.8
65,791	+				-0.2
65,791	+				+0.4
65,792	-				+0.4
65,792	-				-0.7
65,792	-				-0.7
65,792	-				+0.3
65,792	-				+2.4
65,792	-				-0.4
65,792	-				-0.1
65,792	-				+0.5
65,822	+				+0.5
65,822	+				-0.2
65,822	+				-1.0
65,822	+				+0.7
65,822	+				-0.9
65,822	+				-2.8
65,823	-				+0.4
65,823	-				-0.0
65,823	-				+0.1
65,823	-				-0.2
65,823	-				-0.2
65,823	-				+1.3
65,823	-				+0.6
65,823	-				+1.2
65,826	+				+0.6
65,826	+				+1.0
65,826	+				-0.4
65,827	-				+1.3