Experiment: L-Tryptophan (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_03831 and CCNA_03832 are separated by 16 nucleotides CCNA_03832 and CCNA_03833 are separated by 17 nucleotides CCNA_03833 and CCNA_03834 are separated by 65 nucleotides
CCNA_03831: CCNA_03831 - major facilitator superfamily transporter, at 3,995,750 to 3,997,351
_03831
CCNA_03832: CCNA_03832 - TetR-family transcriptional regulator, at 3,997,368 to 3,997,976
_03832
CCNA_03833: CCNA_03833 - enoyl-(acyl-carrier protein) reductase FabI, at 3,997,994 to 3,998,809
_03833
CCNA_03834: CCNA_03834 - tetratricopeptide repeat family protein, at 3,998,875 to 4,000,665
_03834
Position (kb)
3997
3998 Strain fitness (log2 ratio)
-2
-1
0
1
2
3
4
5
6
7 at 3996.391 kb on + strand, within CCNA_03831 at 3996.414 kb on + strand, within CCNA_03831 at 3996.476 kb on + strand, within CCNA_03831 at 3996.476 kb on - strand, within CCNA_03831 at 3996.503 kb on - strand, within CCNA_03831 at 3996.542 kb on - strand, within CCNA_03831 at 3996.554 kb on + strand, within CCNA_03831 at 3996.563 kb on - strand, within CCNA_03831 at 3996.618 kb on + strand, within CCNA_03831 at 3996.645 kb on - strand, within CCNA_03831 at 3996.681 kb on + strand, within CCNA_03831 at 3996.705 kb on - strand, within CCNA_03831 at 3996.708 kb on + strand, within CCNA_03831 at 3996.735 kb on + strand, within CCNA_03831 at 3996.771 kb on + strand, within CCNA_03831 at 3996.834 kb on + strand, within CCNA_03831 at 3996.871 kb on - strand, within CCNA_03831 at 3996.871 kb on - strand, within CCNA_03831 at 3997.047 kb on - strand, within CCNA_03831 at 3997.103 kb on - strand, within CCNA_03831 at 3997.111 kb on + strand, within CCNA_03831 at 3997.116 kb on + strand, within CCNA_03831 at 3997.119 kb on - strand, within CCNA_03831 at 3997.170 kb on + strand, within CCNA_03831 at 3997.184 kb on + strand, within CCNA_03831 at 3997.251 kb on + strand at 3997.251 kb on + strand at 3997.259 kb on - strand at 3997.391 kb on - strand at 3997.483 kb on + strand, within CCNA_03832 at 3997.499 kb on + strand, within CCNA_03832 at 3997.500 kb on - strand, within CCNA_03832 at 3997.500 kb on - strand, within CCNA_03832 at 3997.584 kb on - strand, within CCNA_03832 at 3997.623 kb on + strand, within CCNA_03832 at 3997.629 kb on + strand, within CCNA_03832 at 3997.629 kb on + strand, within CCNA_03832 at 3997.629 kb on + strand, within CCNA_03832 at 3997.736 kb on + strand, within CCNA_03832 at 3997.822 kb on + strand, within CCNA_03832 at 3997.897 kb on + strand, within CCNA_03832 at 3997.917 kb on + strand at 3997.917 kb on - strand at 3997.944 kb on + strand at 3997.969 kb on - strand at 3997.971 kb on + strand at 3997.971 kb on + strand at 3997.971 kb on + strand at 3997.976 kb on + strand at 3997.976 kb on + strand at 3997.976 kb on + strand at 3997.976 kb on + strand at 3997.979 kb on - strand at 3997.979 kb on - strand at 3997.979 kb on - strand at 3997.986 kb on + strand at 3997.991 kb on + strand at 3997.991 kb on + strand at 3997.992 kb on + strand at 3997.999 kb on - strand at 3998.010 kb on - strand at 3998.834 kb on + strand at 3998.852 kb on - strand at 3998.871 kb on + strand at 3998.891 kb on - strand at 3998.930 kb on + strand at 3998.973 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Tryptophan (N) remove 3,996,391 + CCNA_03831 0.40 -0.9 3,996,414 + CCNA_03831 0.41 -2.2 3,996,476 + CCNA_03831 0.45 -1.7 3,996,476 - CCNA_03831 0.45 -1.9 3,996,503 - CCNA_03831 0.47 -1.5 3,996,542 - CCNA_03831 0.49 +0.2 3,996,554 + CCNA_03831 0.50 -1.8 3,996,563 - CCNA_03831 0.51 -1.4 3,996,618 + CCNA_03831 0.54 -1.0 3,996,645 - CCNA_03831 0.56 -0.9 3,996,681 + CCNA_03831 0.58 +1.7 3,996,705 - CCNA_03831 0.60 -1.2 3,996,708 + CCNA_03831 0.60 -0.8 3,996,735 + CCNA_03831 0.61 +0.7 3,996,771 + CCNA_03831 0.64 +2.5 3,996,834 + CCNA_03831 0.68 +1.4 3,996,871 - CCNA_03831 0.70 -1.9 3,996,871 - CCNA_03831 0.70 -1.4 3,997,047 - CCNA_03831 0.81 -0.9 3,997,103 - CCNA_03831 0.84 +0.5 3,997,111 + CCNA_03831 0.85 -2.4 3,997,116 + CCNA_03831 0.85 -0.1 3,997,119 - CCNA_03831 0.85 -1.4 3,997,170 + CCNA_03831 0.89 -2.4 3,997,184 + CCNA_03831 0.90 -0.9 3,997,251 + -0.5 3,997,251 + -0.6 3,997,259 - -1.2 3,997,391 - +4.2 3,997,483 + CCNA_03832 0.19 +5.8 3,997,499 + CCNA_03832 0.22 +6.3 3,997,500 - CCNA_03832 0.22 +3.7 3,997,500 - CCNA_03832 0.22 +3.3 3,997,584 - CCNA_03832 0.35 +4.9 3,997,623 + CCNA_03832 0.42 +5.4 3,997,629 + CCNA_03832 0.43 +6.7 3,997,629 + CCNA_03832 0.43 +5.8 3,997,629 + CCNA_03832 0.43 +5.2 3,997,736 + CCNA_03832 0.60 +6.1 3,997,822 + CCNA_03832 0.75 +6.3 3,997,897 + CCNA_03832 0.87 +6.4 3,997,917 + +6.0 3,997,917 - +4.5 3,997,944 + +6.5 3,997,969 - +7.3 3,997,971 + +0.4 3,997,971 + +0.6 3,997,971 + +0.3 3,997,976 + -0.5 3,997,976 + +0.7 3,997,976 + +0.9 3,997,976 + +0.1 3,997,979 - +0.7 3,997,979 - +0.9 3,997,979 - +0.9 3,997,986 + +1.7 3,997,991 + +0.4 3,997,991 + -1.7 3,997,992 + -0.3 3,997,999 - +0.8 3,998,010 - +1.1 3,998,834 + -0.1 3,998,852 - +0.2 3,998,871 + +0.7 3,998,891 - -0.3 3,998,930 + +0.5 3,998,973 + -1.2
Or see this region's nucleotide sequence