Strain Fitness in Caulobacter crescentus NA1000 around CCNA_02476

Experiment: L-Tryptophan (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_02474 and CCNA_02475 are separated by 87 nucleotidesCCNA_02475 and CCNA_02476 are separated by 126 nucleotidesCCNA_02476 and CCNA_02477 overlap by 4 nucleotidesCCNA_02477 and CCNA_02478 are separated by 48 nucleotides CCNA_02474: CCNA_02474 - MarR-family transcriptional regulator, at 2,619,485 to 2,619,961 _02474 CCNA_02475: CCNA_02475 - transcriptional regulator vanR, at 2,620,049 to 2,620,783 _02475 CCNA_02476: CCNA_02476 - vanillate demethylase oxygenase subunit A vanA, at 2,620,910 to 2,621,986 _02476 CCNA_02477: CCNA_02477 - vanillate demethylase oxidoreductase subunit vanB, at 2,621,983 to 2,622,933 _02477 CCNA_02478: CCNA_02478 - dihydrolipoamide acetyltransferase component of acetoin cleaving system, at 2,622,982 to 2,623,884 _02478 Position (kb) 2620 2621 2622Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 2619.917 kb on + strandat 2619.927 kb on - strandat 2619.954 kb on - strandat 2619.954 kb on - strandat 2619.956 kb on + strandat 2620.021 kb on + strandat 2620.021 kb on + strandat 2620.021 kb on + strandat 2620.022 kb on + strandat 2620.029 kb on - strandat 2620.037 kb on + strandat 2620.037 kb on + strandat 2620.045 kb on - strandat 2620.045 kb on - strandat 2620.064 kb on + strandat 2620.138 kb on + strand, within CCNA_02475at 2620.146 kb on - strand, within CCNA_02475at 2620.146 kb on - strand, within CCNA_02475at 2620.146 kb on - strand, within CCNA_02475at 2620.146 kb on - strand, within CCNA_02475at 2620.189 kb on - strand, within CCNA_02475at 2620.203 kb on + strand, within CCNA_02475at 2620.203 kb on + strand, within CCNA_02475at 2620.211 kb on - strand, within CCNA_02475at 2620.224 kb on + strand, within CCNA_02475at 2620.232 kb on - strand, within CCNA_02475at 2620.261 kb on - strand, within CCNA_02475at 2620.319 kb on + strand, within CCNA_02475at 2620.327 kb on - strand, within CCNA_02475at 2620.327 kb on - strand, within CCNA_02475at 2620.327 kb on - strand, within CCNA_02475at 2620.327 kb on - strand, within CCNA_02475at 2620.339 kb on - strand, within CCNA_02475at 2620.344 kb on + strand, within CCNA_02475at 2620.347 kb on - strand, within CCNA_02475at 2620.352 kb on - strand, within CCNA_02475at 2620.352 kb on - strand, within CCNA_02475at 2620.352 kb on - strand, within CCNA_02475at 2620.357 kb on - strand, within CCNA_02475at 2620.376 kb on - strand, within CCNA_02475at 2620.391 kb on + strand, within CCNA_02475at 2620.412 kb on - strand, within CCNA_02475at 2620.477 kb on - strand, within CCNA_02475at 2620.500 kb on - strand, within CCNA_02475at 2620.553 kb on - strand, within CCNA_02475at 2620.578 kb on + strand, within CCNA_02475at 2620.586 kb on - strand, within CCNA_02475at 2620.586 kb on - strand, within CCNA_02475at 2620.586 kb on - strand, within CCNA_02475at 2620.586 kb on - strand, within CCNA_02475at 2620.586 kb on - strand, within CCNA_02475at 2620.626 kb on - strand, within CCNA_02475at 2620.626 kb on - strand, within CCNA_02475at 2620.626 kb on - strand, within CCNA_02475at 2620.628 kb on + strand, within CCNA_02475at 2620.628 kb on + strand, within CCNA_02475at 2620.628 kb on + strand, within CCNA_02475at 2620.628 kb on + strand, within CCNA_02475at 2620.628 kb on + strand, within CCNA_02475at 2620.634 kb on - strand, within CCNA_02475at 2620.634 kb on - strand, within CCNA_02475at 2620.636 kb on - strand, within CCNA_02475at 2620.636 kb on - strand, within CCNA_02475at 2620.636 kb on - strand, within CCNA_02475at 2620.636 kb on - strand, within CCNA_02475at 2620.636 kb on - strand, within CCNA_02475at 2620.636 kb on - strand, within CCNA_02475at 2620.636 kb on - strand, within CCNA_02475at 2620.636 kb on - strand, within CCNA_02475at 2620.669 kb on - strand, within CCNA_02475at 2620.704 kb on + strand, within CCNA_02475at 2620.722 kb on - strandat 2620.722 kb on - strandat 2620.778 kb on + strandat 2620.778 kb on + strandat 2620.786 kb on - strandat 2620.790 kb on + strandat 2620.820 kb on - strandat 2620.923 kb on - strandat 2620.927 kb on + strandat 2620.927 kb on + strandat 2620.927 kb on + strandat 2620.927 kb on + strandat 2620.935 kb on - strandat 2620.957 kb on - strandat 2620.966 kb on + strandat 2620.974 kb on + strandat 2620.974 kb on + strandat 2620.982 kb on - strandat 2620.997 kb on + strandat 2620.997 kb on + strandat 2620.997 kb on + strandat 2620.997 kb on + strandat 2620.997 kb on + strandat 2620.997 kb on + strandat 2620.997 kb on + strandat 2621.005 kb on - strandat 2621.005 kb on - strandat 2621.023 kb on + strand, within CCNA_02476at 2621.031 kb on - strand, within CCNA_02476at 2621.082 kb on - strand, within CCNA_02476at 2621.082 kb on - strand, within CCNA_02476at 2621.082 kb on - strand, within CCNA_02476at 2621.101 kb on + strand, within CCNA_02476at 2621.101 kb on + strand, within CCNA_02476at 2621.108 kb on + strand, within CCNA_02476at 2621.110 kb on - strand, within CCNA_02476at 2621.116 kb on - strand, within CCNA_02476at 2621.153 kb on + strand, within CCNA_02476at 2621.153 kb on + strand, within CCNA_02476at 2621.161 kb on - strand, within CCNA_02476at 2621.168 kb on + strand, within CCNA_02476at 2621.198 kb on + strand, within CCNA_02476at 2621.246 kb on + strand, within CCNA_02476at 2621.308 kb on + strand, within CCNA_02476at 2621.308 kb on + strand, within CCNA_02476at 2621.308 kb on + strand, within CCNA_02476at 2621.316 kb on - strand, within CCNA_02476at 2621.316 kb on - strand, within CCNA_02476at 2621.316 kb on - strand, within CCNA_02476at 2621.330 kb on - strand, within CCNA_02476at 2621.354 kb on - strand, within CCNA_02476at 2621.396 kb on + strand, within CCNA_02476at 2621.396 kb on + strand, within CCNA_02476at 2621.430 kb on + strand, within CCNA_02476at 2621.438 kb on - strand, within CCNA_02476at 2621.440 kb on + strand, within CCNA_02476at 2621.443 kb on - strand, within CCNA_02476at 2621.551 kb on - strand, within CCNA_02476at 2621.553 kb on + strand, within CCNA_02476at 2621.620 kb on + strand, within CCNA_02476at 2621.637 kb on + strand, within CCNA_02476at 2621.644 kb on - strand, within CCNA_02476at 2621.644 kb on - strand, within CCNA_02476at 2621.701 kb on + strand, within CCNA_02476at 2621.737 kb on + strand, within CCNA_02476at 2621.743 kb on + strand, within CCNA_02476at 2621.751 kb on - strand, within CCNA_02476at 2621.763 kb on + strand, within CCNA_02476at 2621.764 kb on - strand, within CCNA_02476at 2621.788 kb on + strand, within CCNA_02476at 2621.788 kb on + strand, within CCNA_02476at 2621.788 kb on + strand, within CCNA_02476at 2621.788 kb on + strand, within CCNA_02476at 2621.796 kb on - strand, within CCNA_02476at 2621.796 kb on - strand, within CCNA_02476at 2621.804 kb on - strand, within CCNA_02476at 2621.807 kb on + strand, within CCNA_02476at 2621.815 kb on - strand, within CCNA_02476at 2621.820 kb on - strand, within CCNA_02476at 2621.839 kb on - strand, within CCNA_02476at 2621.839 kb on - strand, within CCNA_02476at 2621.869 kb on + strand, within CCNA_02476at 2621.869 kb on + strand, within CCNA_02476at 2621.872 kb on - strand, within CCNA_02476at 2621.877 kb on - strand, within CCNA_02476at 2621.877 kb on - strand, within CCNA_02476at 2621.880 kb on + strandat 2621.882 kb on - strandat 2621.927 kb on + strandat 2621.933 kb on + strandat 2621.938 kb on + strandat 2621.941 kb on - strandat 2621.958 kb on + strandat 2621.990 kb on + strandat 2621.991 kb on + strandat 2621.998 kb on - strandat 2622.014 kb on + strandat 2622.032 kb on - strandat 2622.034 kb on - strandat 2622.083 kb on - strand, within CCNA_02477at 2622.126 kb on + strand, within CCNA_02477at 2622.126 kb on + strand, within CCNA_02477at 2622.162 kb on - strand, within CCNA_02477at 2622.173 kb on + strand, within CCNA_02477at 2622.188 kb on + strand, within CCNA_02477at 2622.239 kb on - strand, within CCNA_02477at 2622.247 kb on + strand, within CCNA_02477at 2622.251 kb on + strand, within CCNA_02477at 2622.259 kb on - strand, within CCNA_02477at 2622.277 kb on + strand, within CCNA_02477at 2622.289 kb on + strand, within CCNA_02477at 2622.290 kb on - strand, within CCNA_02477at 2622.306 kb on - strand, within CCNA_02477at 2622.320 kb on + strand, within CCNA_02477at 2622.355 kb on + strand, within CCNA_02477at 2622.445 kb on + strand, within CCNA_02477at 2622.445 kb on + strand, within CCNA_02477at 2622.445 kb on + strand, within CCNA_02477at 2622.445 kb on + strand, within CCNA_02477at 2622.445 kb on + strand, within CCNA_02477at 2622.519 kb on - strand, within CCNA_02477at 2622.524 kb on - strand, within CCNA_02477at 2622.530 kb on - strand, within CCNA_02477at 2622.600 kb on + strand, within CCNA_02477at 2622.613 kb on + strand, within CCNA_02477at 2622.641 kb on - strand, within CCNA_02477at 2622.651 kb on - strand, within CCNA_02477at 2622.692 kb on + strand, within CCNA_02477at 2622.702 kb on + strand, within CCNA_02477at 2622.710 kb on - strand, within CCNA_02477at 2622.729 kb on - strand, within CCNA_02477at 2622.739 kb on + strand, within CCNA_02477at 2622.740 kb on + strand, within CCNA_02477at 2622.747 kb on - strand, within CCNA_02477at 2622.781 kb on - strand, within CCNA_02477at 2622.786 kb on + strand, within CCNA_02477at 2622.799 kb on + strand, within CCNA_02477at 2622.799 kb on + strand, within CCNA_02477at 2622.807 kb on - strand, within CCNA_02477at 2622.807 kb on - strand, within CCNA_02477at 2622.807 kb on - strand, within CCNA_02477at 2622.807 kb on - strand, within CCNA_02477at 2622.807 kb on - strand, within CCNA_02477at 2622.807 kb on - strand, within CCNA_02477at 2622.834 kb on + strand, within CCNA_02477at 2622.843 kb on + strandat 2622.851 kb on - strandat 2622.888 kb on - strandat 2622.916 kb on - strandat 2622.973 kb on - strandat 2622.975 kb on - strandat 2622.985 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Tryptophan (N)
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2,619,917 + -1.3
2,619,927 - -0.2
2,619,954 - -0.2
2,619,954 - +0.0
2,619,956 + -1.0
2,620,021 + -1.6
2,620,021 + -1.6
2,620,021 + -1.2
2,620,022 + +0.6
2,620,029 - +0.2
2,620,037 + -1.0
2,620,037 + -1.9
2,620,045 - -0.3
2,620,045 - +0.0
2,620,064 + -1.7
2,620,138 + CCNA_02475 0.12 -1.9
2,620,146 - CCNA_02475 0.13 +1.8
2,620,146 - CCNA_02475 0.13 +0.9
2,620,146 - CCNA_02475 0.13 +2.5
2,620,146 - CCNA_02475 0.13 +1.0
2,620,189 - CCNA_02475 0.19 +1.8
2,620,203 + CCNA_02475 0.21 -1.6
2,620,203 + CCNA_02475 0.21 -2.5
2,620,211 - CCNA_02475 0.22 +1.0
2,620,224 + CCNA_02475 0.24 -2.4
2,620,232 - CCNA_02475 0.25 +1.3
2,620,261 - CCNA_02475 0.29 +1.4
2,620,319 + CCNA_02475 0.37 -1.1
2,620,327 - CCNA_02475 0.38 +1.3
2,620,327 - CCNA_02475 0.38 +1.4
2,620,327 - CCNA_02475 0.38 +0.6
2,620,327 - CCNA_02475 0.38 +1.3
2,620,339 - CCNA_02475 0.39 +1.7
2,620,344 + CCNA_02475 0.40 -1.4
2,620,347 - CCNA_02475 0.41 +1.7
2,620,352 - CCNA_02475 0.41 +1.6
2,620,352 - CCNA_02475 0.41 +1.4
2,620,352 - CCNA_02475 0.41 +1.8
2,620,357 - CCNA_02475 0.42 +2.0
2,620,376 - CCNA_02475 0.44 +0.8
2,620,391 + CCNA_02475 0.47 -0.1
2,620,412 - CCNA_02475 0.49 +1.5
2,620,477 - CCNA_02475 0.58 +1.3
2,620,500 - CCNA_02475 0.61 +1.2
2,620,553 - CCNA_02475 0.69 +1.4
2,620,578 + CCNA_02475 0.72 -1.1
2,620,586 - CCNA_02475 0.73 +0.3
2,620,586 - CCNA_02475 0.73 +2.0
2,620,586 - CCNA_02475 0.73 +1.2
2,620,586 - CCNA_02475 0.73 +1.0
2,620,586 - CCNA_02475 0.73 +1.2
2,620,626 - CCNA_02475 0.79 +0.6
2,620,626 - CCNA_02475 0.79 +1.7
2,620,626 - CCNA_02475 0.79 +1.4
2,620,628 + CCNA_02475 0.79 -0.3
2,620,628 + CCNA_02475 0.79 -1.2
2,620,628 + CCNA_02475 0.79 -0.8
2,620,628 + CCNA_02475 0.79 -0.6
2,620,628 + CCNA_02475 0.79 +0.1
2,620,634 - CCNA_02475 0.80 +0.9
2,620,634 - CCNA_02475 0.80 +1.0
2,620,636 - CCNA_02475 0.80 +1.5
2,620,636 - CCNA_02475 0.80 +1.9
2,620,636 - CCNA_02475 0.80 +1.4
2,620,636 - CCNA_02475 0.80 +1.1
2,620,636 - CCNA_02475 0.80 +1.0
2,620,636 - CCNA_02475 0.80 +1.3
2,620,636 - CCNA_02475 0.80 +3.3
2,620,636 - CCNA_02475 0.80 +1.0
2,620,669 - CCNA_02475 0.84 +1.2
2,620,704 + CCNA_02475 0.89 -0.1
2,620,722 - +1.0
2,620,722 - +1.2
2,620,778 + -0.7
2,620,778 + -1.0
2,620,786 - +0.3
2,620,790 + +0.9
2,620,820 - +2.1
2,620,923 - -0.7
2,620,927 + -0.4
2,620,927 + -1.7
2,620,927 + +0.3
2,620,927 + +0.9
2,620,935 - -0.2
2,620,957 - -0.9
2,620,966 + +1.3
2,620,974 + -1.2
2,620,974 + +0.8
2,620,982 - +0.4
2,620,997 + -1.5
2,620,997 + -0.5
2,620,997 + -0.4
2,620,997 + -1.7
2,620,997 + -1.5
2,620,997 + +0.7
2,620,997 + -0.8
2,621,005 - -0.2
2,621,005 - -1.2
2,621,023 + CCNA_02476 0.10 -0.2
2,621,031 - CCNA_02476 0.11 -0.6
2,621,082 - CCNA_02476 0.16 -0.1
2,621,082 - CCNA_02476 0.16 +0.1
2,621,082 - CCNA_02476 0.16 -0.1
2,621,101 + CCNA_02476 0.18 -0.6
2,621,101 + CCNA_02476 0.18 +0.5
2,621,108 + CCNA_02476 0.18 +2.3
2,621,110 - CCNA_02476 0.19 +0.2
2,621,116 - CCNA_02476 0.19 -0.8
2,621,153 + CCNA_02476 0.23 +1.3
2,621,153 + CCNA_02476 0.23 +0.3
2,621,161 - CCNA_02476 0.23 -0.9
2,621,168 + CCNA_02476 0.24 -0.8
2,621,198 + CCNA_02476 0.27 -0.2
2,621,246 + CCNA_02476 0.31 +0.2
2,621,308 + CCNA_02476 0.37 -2.9
2,621,308 + CCNA_02476 0.37 -0.1
2,621,308 + CCNA_02476 0.37 -0.1
2,621,316 - CCNA_02476 0.38 -1.5
2,621,316 - CCNA_02476 0.38 +0.4
2,621,316 - CCNA_02476 0.38 -1.0
2,621,330 - CCNA_02476 0.39 +0.7
2,621,354 - CCNA_02476 0.41 -2.1
2,621,396 + CCNA_02476 0.45 +0.6
2,621,396 + CCNA_02476 0.45 -1.4
2,621,430 + CCNA_02476 0.48 -1.0
2,621,438 - CCNA_02476 0.49 -0.1
2,621,440 + CCNA_02476 0.49 -3.0
2,621,443 - CCNA_02476 0.49 -1.7
2,621,551 - CCNA_02476 0.60 +0.9
2,621,553 + CCNA_02476 0.60 -1.4
2,621,620 + CCNA_02476 0.66 -0.5
2,621,637 + CCNA_02476 0.68 -2.4
2,621,644 - CCNA_02476 0.68 +1.3
2,621,644 - CCNA_02476 0.68 -3.0
2,621,701 + CCNA_02476 0.73 +0.5
2,621,737 + CCNA_02476 0.77 -1.8
2,621,743 + CCNA_02476 0.77 -0.8
2,621,751 - CCNA_02476 0.78 -2.9
2,621,763 + CCNA_02476 0.79 -2.0
2,621,764 - CCNA_02476 0.79 -1.6
2,621,788 + CCNA_02476 0.82 -2.3
2,621,788 + CCNA_02476 0.82 +2.2
2,621,788 + CCNA_02476 0.82 -1.6
2,621,788 + CCNA_02476 0.82 -2.7
2,621,796 - CCNA_02476 0.82 -0.8
2,621,796 - CCNA_02476 0.82 -2.9
2,621,804 - CCNA_02476 0.83 -0.8
2,621,807 + CCNA_02476 0.83 -2.5
2,621,815 - CCNA_02476 0.84 -1.6
2,621,820 - CCNA_02476 0.84 -0.9
2,621,839 - CCNA_02476 0.86 -2.1
2,621,839 - CCNA_02476 0.86 -2.0
2,621,869 + CCNA_02476 0.89 -2.6
2,621,869 + CCNA_02476 0.89 -0.7
2,621,872 - CCNA_02476 0.89 -1.7
2,621,877 - CCNA_02476 0.90 -0.4
2,621,877 - CCNA_02476 0.90 -0.7
2,621,880 + -0.3
2,621,882 - +1.0
2,621,927 + -1.3
2,621,933 + -1.1
2,621,938 + -2.0
2,621,941 - -0.8
2,621,958 + -0.7
2,621,990 + +0.5
2,621,991 + +0.7
2,621,998 - -2.2
2,622,014 + -0.5
2,622,032 - +0.3
2,622,034 - -0.9
2,622,083 - CCNA_02477 0.11 -2.5
2,622,126 + CCNA_02477 0.15 -0.7
2,622,126 + CCNA_02477 0.15 -2.0
2,622,162 - CCNA_02477 0.19 -1.1
2,622,173 + CCNA_02477 0.20 -0.4
2,622,188 + CCNA_02477 0.22 -0.6
2,622,239 - CCNA_02477 0.27 -3.2
2,622,247 + CCNA_02477 0.28 -0.3
2,622,251 + CCNA_02477 0.28 +0.1
2,622,259 - CCNA_02477 0.29 +0.4
2,622,277 + CCNA_02477 0.31 +0.7
2,622,289 + CCNA_02477 0.32 -1.3
2,622,290 - CCNA_02477 0.32 -2.2
2,622,306 - CCNA_02477 0.34 -1.5
2,622,320 + CCNA_02477 0.35 -1.3
2,622,355 + CCNA_02477 0.39 -0.3
2,622,445 + CCNA_02477 0.49 +0.9
2,622,445 + CCNA_02477 0.49 -0.3
2,622,445 + CCNA_02477 0.49 -1.7
2,622,445 + CCNA_02477 0.49 -1.0
2,622,445 + CCNA_02477 0.49 -2.7
2,622,519 - CCNA_02477 0.56 -0.4
2,622,524 - CCNA_02477 0.57 -2.3
2,622,530 - CCNA_02477 0.58 -2.0
2,622,600 + CCNA_02477 0.65 -0.3
2,622,613 + CCNA_02477 0.66 +0.9
2,622,641 - CCNA_02477 0.69 -2.0
2,622,651 - CCNA_02477 0.70 +0.8
2,622,692 + CCNA_02477 0.75 -0.2
2,622,702 + CCNA_02477 0.76 -0.7
2,622,710 - CCNA_02477 0.76 +1.2
2,622,729 - CCNA_02477 0.78 +1.1
2,622,739 + CCNA_02477 0.79 +0.1
2,622,740 + CCNA_02477 0.80 -0.9
2,622,747 - CCNA_02477 0.80 +1.1
2,622,781 - CCNA_02477 0.84 +0.6
2,622,786 + CCNA_02477 0.84 +0.1
2,622,799 + CCNA_02477 0.86 -2.3
2,622,799 + CCNA_02477 0.86 -1.1
2,622,807 - CCNA_02477 0.87 -1.5
2,622,807 - CCNA_02477 0.87 -1.1
2,622,807 - CCNA_02477 0.87 -1.7
2,622,807 - CCNA_02477 0.87 -0.9
2,622,807 - CCNA_02477 0.87 -1.8
2,622,807 - CCNA_02477 0.87 +0.4
2,622,834 + CCNA_02477 0.89 -0.5
2,622,843 + +0.4
2,622,851 - -1.0
2,622,888 - -1.3
2,622,916 - -0.4
2,622,973 - -0.5
2,622,975 - -1.7
2,622,985 - -0.7

Or see this region's nucleotide sequence