Strain Fitness in Caulobacter crescentus NA1000 around CCNA_02121

Experiment: L-Tryptophan (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_02120 and CCNA_02121 are separated by 142 nucleotidesCCNA_02121 and CCNA_02122 overlap by 4 nucleotides CCNA_02120: CCNA_02120 - tetratricopeptide repeat family protein, at 2,270,198 to 2,271,166 _02120 CCNA_02121: CCNA_02121 - ATP-dependent helicase, at 2,271,309 to 2,273,888 _02121 CCNA_02122: CCNA_02122 - DNA repair nuclease, ligase-associated (TIGR04123) (from data), at 2,273,885 to 2,274,592 _02122 Position (kb) 2271 2272 2273 2274Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 2270.329 kb on - strand, within CCNA_02120at 2270.340 kb on - strand, within CCNA_02120at 2270.349 kb on + strand, within CCNA_02120at 2270.351 kb on + strand, within CCNA_02120at 2270.368 kb on + strand, within CCNA_02120at 2270.459 kb on + strand, within CCNA_02120at 2270.459 kb on + strand, within CCNA_02120at 2270.543 kb on - strand, within CCNA_02120at 2270.545 kb on - strand, within CCNA_02120at 2270.554 kb on + strand, within CCNA_02120at 2270.609 kb on + strand, within CCNA_02120at 2270.609 kb on + strand, within CCNA_02120at 2270.617 kb on - strand, within CCNA_02120at 2270.663 kb on + strand, within CCNA_02120at 2270.686 kb on + strand, within CCNA_02120at 2270.686 kb on + strand, within CCNA_02120at 2270.717 kb on + strand, within CCNA_02120at 2270.747 kb on + strand, within CCNA_02120at 2270.747 kb on + strand, within CCNA_02120at 2270.778 kb on - strand, within CCNA_02120at 2270.783 kb on - strand, within CCNA_02120at 2270.807 kb on - strand, within CCNA_02120at 2270.822 kb on + strand, within CCNA_02120at 2270.830 kb on - strand, within CCNA_02120at 2270.846 kb on + strand, within CCNA_02120at 2270.848 kb on + strand, within CCNA_02120at 2270.865 kb on - strand, within CCNA_02120at 2270.963 kb on - strand, within CCNA_02120at 2271.032 kb on - strand, within CCNA_02120at 2271.032 kb on - strand, within CCNA_02120at 2271.100 kb on - strandat 2271.117 kb on + strandat 2271.117 kb on + strandat 2271.125 kb on - strandat 2271.125 kb on - strandat 2271.134 kb on + strandat 2271.169 kb on - strandat 2271.176 kb on - strandat 2271.182 kb on - strandat 2271.184 kb on - strandat 2271.185 kb on + strandat 2271.213 kb on - strandat 2271.219 kb on + strandat 2271.226 kb on + strandat 2271.248 kb on - strandat 2271.341 kb on - strandat 2271.344 kb on + strandat 2271.346 kb on - strandat 2271.393 kb on + strandat 2271.401 kb on - strandat 2271.412 kb on - strandat 2271.423 kb on + strandat 2271.431 kb on - strandat 2271.450 kb on + strandat 2271.450 kb on + strandat 2271.497 kb on + strandat 2271.504 kb on - strandat 2271.509 kb on + strandat 2271.526 kb on + strandat 2271.534 kb on - strandat 2271.534 kb on - strandat 2271.685 kb on + strand, within CCNA_02121at 2271.685 kb on + strand, within CCNA_02121at 2271.690 kb on + strand, within CCNA_02121at 2271.703 kb on - strand, within CCNA_02121at 2271.719 kb on + strand, within CCNA_02121at 2271.719 kb on + strand, within CCNA_02121at 2271.724 kb on + strand, within CCNA_02121at 2271.727 kb on - strand, within CCNA_02121at 2271.756 kb on + strand, within CCNA_02121at 2271.761 kb on + strand, within CCNA_02121at 2271.894 kb on - strand, within CCNA_02121at 2271.921 kb on + strand, within CCNA_02121at 2271.961 kb on - strand, within CCNA_02121at 2271.989 kb on - strand, within CCNA_02121at 2272.004 kb on - strand, within CCNA_02121at 2272.009 kb on - strand, within CCNA_02121at 2272.032 kb on - strand, within CCNA_02121at 2272.049 kb on + strand, within CCNA_02121at 2272.049 kb on + strand, within CCNA_02121at 2272.062 kb on - strand, within CCNA_02121at 2272.104 kb on - strand, within CCNA_02121at 2272.124 kb on - strand, within CCNA_02121at 2272.134 kb on + strand, within CCNA_02121at 2272.142 kb on - strand, within CCNA_02121at 2272.142 kb on - strand, within CCNA_02121at 2272.147 kb on - strand, within CCNA_02121at 2272.266 kb on - strand, within CCNA_02121at 2272.281 kb on + strand, within CCNA_02121at 2272.281 kb on + strand, within CCNA_02121at 2272.286 kb on + strand, within CCNA_02121at 2272.293 kb on + strand, within CCNA_02121at 2272.293 kb on + strand, within CCNA_02121at 2272.328 kb on + strand, within CCNA_02121at 2272.336 kb on - strand, within CCNA_02121at 2272.373 kb on + strand, within CCNA_02121at 2272.378 kb on + strand, within CCNA_02121at 2272.381 kb on - strand, within CCNA_02121at 2272.406 kb on - strand, within CCNA_02121at 2272.406 kb on - strand, within CCNA_02121at 2272.406 kb on - strand, within CCNA_02121at 2272.472 kb on - strand, within CCNA_02121at 2272.502 kb on + strand, within CCNA_02121at 2272.553 kb on - strand, within CCNA_02121at 2272.624 kb on + strand, within CCNA_02121at 2272.637 kb on + strand, within CCNA_02121at 2272.638 kb on + strand, within CCNA_02121at 2272.649 kb on + strand, within CCNA_02121at 2272.654 kb on + strand, within CCNA_02121at 2272.706 kb on + strand, within CCNA_02121at 2272.706 kb on + strand, within CCNA_02121at 2272.706 kb on + strand, within CCNA_02121at 2272.706 kb on + strand, within CCNA_02121at 2272.706 kb on + strand, within CCNA_02121at 2272.714 kb on - strand, within CCNA_02121at 2272.714 kb on - strand, within CCNA_02121at 2272.731 kb on + strand, within CCNA_02121at 2272.754 kb on + strand, within CCNA_02121at 2272.783 kb on + strand, within CCNA_02121at 2272.823 kb on + strand, within CCNA_02121at 2272.823 kb on + strand, within CCNA_02121at 2272.823 kb on + strand, within CCNA_02121at 2272.823 kb on + strand, within CCNA_02121at 2272.823 kb on + strand, within CCNA_02121at 2272.823 kb on + strand, within CCNA_02121at 2272.831 kb on - strand, within CCNA_02121at 2272.831 kb on - strand, within CCNA_02121at 2272.906 kb on - strand, within CCNA_02121at 2273.015 kb on + strandat 2273.018 kb on - strand, within CCNA_02121at 2273.023 kb on - strand, within CCNA_02121at 2273.101 kb on + strand, within CCNA_02121at 2273.117 kb on + strand, within CCNA_02121at 2273.160 kb on - strand, within CCNA_02121at 2273.178 kb on - strand, within CCNA_02121at 2273.190 kb on + strand, within CCNA_02121at 2273.190 kb on + strand, within CCNA_02121at 2273.190 kb on + strand, within CCNA_02121at 2273.190 kb on + strand, within CCNA_02121at 2273.252 kb on + strand, within CCNA_02121at 2273.260 kb on - strand, within CCNA_02121at 2273.260 kb on - strand, within CCNA_02121at 2273.277 kb on + strandat 2273.311 kb on + strand, within CCNA_02121at 2273.320 kb on + strand, within CCNA_02121at 2273.333 kb on - strand, within CCNA_02121at 2273.337 kb on + strand, within CCNA_02121at 2273.345 kb on - strand, within CCNA_02121at 2273.373 kb on - strand, within CCNA_02121at 2273.425 kb on + strand, within CCNA_02121at 2273.434 kb on + strand, within CCNA_02121at 2273.479 kb on + strand, within CCNA_02121at 2273.488 kb on - strand, within CCNA_02121at 2273.496 kb on + strand, within CCNA_02121at 2273.561 kb on + strand, within CCNA_02121at 2273.615 kb on + strand, within CCNA_02121at 2273.618 kb on - strand, within CCNA_02121at 2273.623 kb on - strand, within CCNA_02121at 2273.623 kb on - strand, within CCNA_02121at 2273.637 kb on + strandat 2273.759 kb on + strandat 2273.759 kb on + strandat 2273.762 kb on - strandat 2273.765 kb on + strandat 2273.780 kb on - strandat 2273.974 kb on + strand, within CCNA_02122at 2273.974 kb on + strand, within CCNA_02122at 2273.995 kb on + strand, within CCNA_02122at 2274.061 kb on - strand, within CCNA_02122at 2274.089 kb on - strand, within CCNA_02122at 2274.183 kb on + strand, within CCNA_02122at 2274.207 kb on + strand, within CCNA_02122at 2274.219 kb on + strand, within CCNA_02122at 2274.229 kb on + strand, within CCNA_02122at 2274.237 kb on - strand, within CCNA_02122at 2274.237 kb on - strand, within CCNA_02122at 2274.269 kb on - strand, within CCNA_02122at 2274.270 kb on - strand, within CCNA_02122at 2274.280 kb on - strand, within CCNA_02122at 2274.367 kb on + strand, within CCNA_02122at 2274.367 kb on + strand, within CCNA_02122at 2274.375 kb on - strand, within CCNA_02122at 2274.380 kb on + strand, within CCNA_02122at 2274.453 kb on - strand, within CCNA_02122at 2274.532 kb on - strandat 2274.556 kb on - strandat 2274.576 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Tryptophan (N)
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2,270,329 - CCNA_02120 0.14 -1.0
2,270,340 - CCNA_02120 0.15 -0.0
2,270,349 + CCNA_02120 0.16 -0.1
2,270,351 + CCNA_02120 0.16 -1.4
2,270,368 + CCNA_02120 0.18 +0.7
2,270,459 + CCNA_02120 0.27 -1.4
2,270,459 + CCNA_02120 0.27 -1.4
2,270,543 - CCNA_02120 0.36 -0.7
2,270,545 - CCNA_02120 0.36 -2.2
2,270,554 + CCNA_02120 0.37 -3.6
2,270,609 + CCNA_02120 0.42 -2.9
2,270,609 + CCNA_02120 0.42 +0.6
2,270,617 - CCNA_02120 0.43 -0.5
2,270,663 + CCNA_02120 0.48 -1.5
2,270,686 + CCNA_02120 0.50 -0.2
2,270,686 + CCNA_02120 0.50 +0.8
2,270,717 + CCNA_02120 0.54 -1.9
2,270,747 + CCNA_02120 0.57 -1.1
2,270,747 + CCNA_02120 0.57 -1.4
2,270,778 - CCNA_02120 0.60 -0.9
2,270,783 - CCNA_02120 0.60 -1.5
2,270,807 - CCNA_02120 0.63 -1.1
2,270,822 + CCNA_02120 0.64 -2.2
2,270,830 - CCNA_02120 0.65 -0.6
2,270,846 + CCNA_02120 0.67 -2.0
2,270,848 + CCNA_02120 0.67 -1.0
2,270,865 - CCNA_02120 0.69 +1.3
2,270,963 - CCNA_02120 0.79 -1.5
2,271,032 - CCNA_02120 0.86 -0.7
2,271,032 - CCNA_02120 0.86 -1.0
2,271,100 - -0.4
2,271,117 + -0.4
2,271,117 + -0.8
2,271,125 - -1.0
2,271,125 - -0.4
2,271,134 + +0.6
2,271,169 - -0.8
2,271,176 - +0.8
2,271,182 - -0.3
2,271,184 - +0.1
2,271,185 + -2.8
2,271,213 - +0.8
2,271,219 + +0.2
2,271,226 + +1.6
2,271,248 - +0.1
2,271,341 - -0.5
2,271,344 + -0.4
2,271,346 - -1.7
2,271,393 + -1.1
2,271,401 - -1.8
2,271,412 - -2.2
2,271,423 + +1.2
2,271,431 - -1.5
2,271,450 + -1.6
2,271,450 + -1.8
2,271,497 + -1.1
2,271,504 - -0.4
2,271,509 + -1.1
2,271,526 + -3.2
2,271,534 - -0.0
2,271,534 - -0.8
2,271,685 + CCNA_02121 0.15 -0.9
2,271,685 + CCNA_02121 0.15 -1.1
2,271,690 + CCNA_02121 0.15 +0.6
2,271,703 - CCNA_02121 0.15 +0.5
2,271,719 + CCNA_02121 0.16 -0.7
2,271,719 + CCNA_02121 0.16 -2.2
2,271,724 + CCNA_02121 0.16 -0.8
2,271,727 - CCNA_02121 0.16 -0.4
2,271,756 + CCNA_02121 0.17 -0.0
2,271,761 + CCNA_02121 0.18 +0.4
2,271,894 - CCNA_02121 0.23 +0.8
2,271,921 + CCNA_02121 0.24 +0.0
2,271,961 - CCNA_02121 0.25 -2.1
2,271,989 - CCNA_02121 0.26 -0.4
2,272,004 - CCNA_02121 0.27 -0.6
2,272,009 - CCNA_02121 0.27 +0.4
2,272,032 - CCNA_02121 0.28 -0.6
2,272,049 + CCNA_02121 0.29 -0.4
2,272,049 + CCNA_02121 0.29 +0.2
2,272,062 - CCNA_02121 0.29 +0.4
2,272,104 - CCNA_02121 0.31 -3.3
2,272,124 - CCNA_02121 0.32 -0.9
2,272,134 + CCNA_02121 0.32 -0.8
2,272,142 - CCNA_02121 0.32 +0.1
2,272,142 - CCNA_02121 0.32 -0.3
2,272,147 - CCNA_02121 0.32 +1.2
2,272,266 - CCNA_02121 0.37 +0.9
2,272,281 + CCNA_02121 0.38 -0.8
2,272,281 + CCNA_02121 0.38 -0.3
2,272,286 + CCNA_02121 0.38 +0.4
2,272,293 + CCNA_02121 0.38 -0.1
2,272,293 + CCNA_02121 0.38 +0.3
2,272,328 + CCNA_02121 0.39 -0.5
2,272,336 - CCNA_02121 0.40 -0.6
2,272,373 + CCNA_02121 0.41 -1.6
2,272,378 + CCNA_02121 0.41 -0.6
2,272,381 - CCNA_02121 0.42 -2.6
2,272,406 - CCNA_02121 0.43 -0.4
2,272,406 - CCNA_02121 0.43 -0.9
2,272,406 - CCNA_02121 0.43 -1.7
2,272,472 - CCNA_02121 0.45 -1.5
2,272,502 + CCNA_02121 0.46 +0.3
2,272,553 - CCNA_02121 0.48 -2.0
2,272,624 + CCNA_02121 0.51 +1.6
2,272,637 + CCNA_02121 0.51 -1.2
2,272,638 + CCNA_02121 0.52 -1.3
2,272,649 + CCNA_02121 0.52 -0.8
2,272,654 + CCNA_02121 0.52 -1.0
2,272,706 + CCNA_02121 0.54 +2.3
2,272,706 + CCNA_02121 0.54 +2.2
2,272,706 + CCNA_02121 0.54 +0.1
2,272,706 + CCNA_02121 0.54 +0.5
2,272,706 + CCNA_02121 0.54 +0.5
2,272,714 - CCNA_02121 0.54 -2.0
2,272,714 - CCNA_02121 0.54 -0.8
2,272,731 + CCNA_02121 0.55 -1.4
2,272,754 + CCNA_02121 0.56 +1.0
2,272,783 + CCNA_02121 0.57 -1.3
2,272,823 + CCNA_02121 0.59 +2.6
2,272,823 + CCNA_02121 0.59 -1.7
2,272,823 + CCNA_02121 0.59 -1.8
2,272,823 + CCNA_02121 0.59 +0.0
2,272,823 + CCNA_02121 0.59 -1.0
2,272,823 + CCNA_02121 0.59 +0.4
2,272,831 - CCNA_02121 0.59 -1.4
2,272,831 - CCNA_02121 0.59 -0.5
2,272,906 - CCNA_02121 0.62 -3.2
2,273,015 + +1.2
2,273,018 - CCNA_02121 0.66 +0.5
2,273,023 - CCNA_02121 0.66 -0.1
2,273,101 + CCNA_02121 0.69 -1.2
2,273,117 + CCNA_02121 0.70 +1.5
2,273,160 - CCNA_02121 0.72 -1.8
2,273,178 - CCNA_02121 0.72 -1.7
2,273,190 + CCNA_02121 0.73 -0.6
2,273,190 + CCNA_02121 0.73 -0.9
2,273,190 + CCNA_02121 0.73 -1.2
2,273,190 + CCNA_02121 0.73 -1.8
2,273,252 + CCNA_02121 0.75 -2.7
2,273,260 - CCNA_02121 0.76 -1.6
2,273,260 - CCNA_02121 0.76 -0.9
2,273,277 + +2.2
2,273,311 + CCNA_02121 0.78 -1.4
2,273,320 + CCNA_02121 0.78 +1.2
2,273,333 - CCNA_02121 0.78 +1.1
2,273,337 + CCNA_02121 0.79 -1.2
2,273,345 - CCNA_02121 0.79 -1.5
2,273,373 - CCNA_02121 0.80 +0.2
2,273,425 + CCNA_02121 0.82 -1.0
2,273,434 + CCNA_02121 0.82 +1.0
2,273,479 + CCNA_02121 0.84 -1.5
2,273,488 - CCNA_02121 0.84 -1.2
2,273,496 + CCNA_02121 0.85 -0.8
2,273,561 + CCNA_02121 0.87 +2.2
2,273,615 + CCNA_02121 0.89 +0.3
2,273,618 - CCNA_02121 0.89 -0.3
2,273,623 - CCNA_02121 0.90 -0.8
2,273,623 - CCNA_02121 0.90 -0.5
2,273,637 + -1.2
2,273,759 + -0.0
2,273,759 + -0.4
2,273,762 - +0.0
2,273,765 + +0.4
2,273,780 - -1.5
2,273,974 + CCNA_02122 0.13 -1.2
2,273,974 + CCNA_02122 0.13 -1.2
2,273,995 + CCNA_02122 0.16 +0.4
2,274,061 - CCNA_02122 0.25 +1.6
2,274,089 - CCNA_02122 0.29 -0.7
2,274,183 + CCNA_02122 0.42 +0.3
2,274,207 + CCNA_02122 0.45 -0.6
2,274,219 + CCNA_02122 0.47 -0.6
2,274,229 + CCNA_02122 0.49 -0.2
2,274,237 - CCNA_02122 0.50 -2.1
2,274,237 - CCNA_02122 0.50 -1.5
2,274,269 - CCNA_02122 0.54 -3.2
2,274,270 - CCNA_02122 0.54 -1.4
2,274,280 - CCNA_02122 0.56 -2.2
2,274,367 + CCNA_02122 0.68 -1.4
2,274,367 + CCNA_02122 0.68 +0.6
2,274,375 - CCNA_02122 0.69 +0.5
2,274,380 + CCNA_02122 0.70 -0.8
2,274,453 - CCNA_02122 0.80 -0.2
2,274,532 - -1.0
2,274,556 - -0.1
2,274,576 - -0.9

Or see this region's nucleotide sequence