Experiment: D-Lactate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Ac3H11_4279 and Ac3H11_4280 overlap by 41 nucleotides Ac3H11_4280 and Ac3H11_4281 are separated by 75 nucleotides Ac3H11_4281 and Ac3H11_4282 are separated by 168 nucleotides
Ac3H11_4279 - Glycerophosphoryl diester phosphodiesterase (EC 3.1.4.46), at 55,764 to 56,918
_4279
Ac3H11_4280 - NAD(P)H dehydrogenase, quinone family, at 56,878 to 57,546
_4280
Ac3H11_4281 - Transcriptional regulator, MerR family, at 57,622 to 58,071
_4281
Ac3H11_4282 - Hydroxypyruvate isomerase (EC 5.3.1.22), at 58,240 to 59,118
_4282
Position (kb) 57
58
59 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 56.808 kb on + strand at 56.808 kb on + strand at 56.808 kb on + strand at 56.809 kb on - strand at 56.809 kb on - strand at 56.809 kb on - strand at 56.809 kb on - strand at 56.809 kb on - strand at 56.809 kb on - strand at 57.140 kb on + strand, within Ac3H11_4280 at 57.141 kb on - strand, within Ac3H11_4280 at 57.224 kb on + strand, within Ac3H11_4280 at 57.224 kb on + strand, within Ac3H11_4280 at 57.224 kb on + strand, within Ac3H11_4280 at 57.225 kb on - strand, within Ac3H11_4280 at 57.305 kb on + strand, within Ac3H11_4280 at 57.306 kb on - strand, within Ac3H11_4280 at 57.386 kb on + strand, within Ac3H11_4280 at 57.471 kb on - strand, within Ac3H11_4280 at 57.959 kb on + strand, within Ac3H11_4281 at 57.960 kb on - strand, within Ac3H11_4281 at 57.960 kb on - strand, within Ac3H11_4281 at 57.968 kb on + strand, within Ac3H11_4281 at 58.013 kb on + strand, within Ac3H11_4281 at 58.014 kb on - strand, within Ac3H11_4281 at 58.113 kb on + strand at 58.116 kb on - strand at 58.122 kb on - strand at 58.131 kb on + strand at 58.205 kb on + strand at 58.205 kb on + strand at 58.226 kb on + strand at 58.226 kb on + strand at 58.226 kb on + strand at 58.226 kb on + strand at 58.227 kb on - strand at 58.227 kb on - strand at 58.297 kb on + strand at 58.297 kb on + strand at 58.298 kb on - strand at 58.567 kb on + strand, within Ac3H11_4282 at 58.568 kb on - strand, within Ac3H11_4282 at 58.747 kb on + strand, within Ac3H11_4282 at 58.748 kb on - strand, within Ac3H11_4282 at 58.748 kb on - strand, within Ac3H11_4282 at 58.748 kb on - strand, within Ac3H11_4282 at 58.828 kb on + strand, within Ac3H11_4282 at 58.828 kb on + strand, within Ac3H11_4282 at 58.829 kb on - strand, within Ac3H11_4282 at 58.829 kb on - strand, within Ac3H11_4282 at 58.829 kb on - strand, within Ac3H11_4282 at 58.829 kb on - strand, within Ac3H11_4282 at 58.829 kb on - strand, within Ac3H11_4282 at 58.829 kb on - strand, within Ac3H11_4282 at 58.829 kb on - strand, within Ac3H11_4282 at 58.829 kb on - strand, within Ac3H11_4282 at 58.829 kb on - strand, within Ac3H11_4282 at 58.876 kb on + strand, within Ac3H11_4282 at 58.877 kb on - strand, within Ac3H11_4282 at 58.993 kb on + strand, within Ac3H11_4282 at 58.994 kb on - strand, within Ac3H11_4282 at 58.994 kb on - strand, within Ac3H11_4282 at 59.034 kb on + strand at 59.035 kb on - strand at 59.035 kb on - strand at 59.035 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction D-Lactate (C) remove 56,808 + +0.0 56,808 + +0.3 56,808 + +0.2 56,809 - +0.4 56,809 - -1.0 56,809 - +0.1 56,809 - +1.2 56,809 - +0.5 56,809 - +0.1 57,140 + Ac3H11_4280 0.39 -0.1 57,141 - Ac3H11_4280 0.39 -0.4 57,224 + Ac3H11_4280 0.52 -0.8 57,224 + Ac3H11_4280 0.52 -0.1 57,224 + Ac3H11_4280 0.52 -0.1 57,225 - Ac3H11_4280 0.52 +1.0 57,305 + Ac3H11_4280 0.64 +2.1 57,306 - Ac3H11_4280 0.64 +0.4 57,386 + Ac3H11_4280 0.76 +0.0 57,471 - Ac3H11_4280 0.89 -0.2 57,959 + Ac3H11_4281 0.75 +0.2 57,960 - Ac3H11_4281 0.75 -0.9 57,960 - Ac3H11_4281 0.75 +0.5 57,968 + Ac3H11_4281 0.77 +1.1 58,013 + Ac3H11_4281 0.87 -0.1 58,014 - Ac3H11_4281 0.87 -0.7 58,113 + -0.3 58,116 - +0.4 58,122 - +0.4 58,131 + -0.2 58,205 + +4.6 58,205 + +0.2 58,226 + -0.5 58,226 + +0.5 58,226 + -0.4 58,226 + -0.5 58,227 - -0.6 58,227 - +0.1 58,297 + -0.9 58,297 + -0.0 58,298 - +0.4 58,567 + Ac3H11_4282 0.37 -0.2 58,568 - Ac3H11_4282 0.37 +0.6 58,747 + Ac3H11_4282 0.58 -0.2 58,748 - Ac3H11_4282 0.58 +0.9 58,748 - Ac3H11_4282 0.58 +0.1 58,748 - Ac3H11_4282 0.58 +0.8 58,828 + Ac3H11_4282 0.67 -1.9 58,828 + Ac3H11_4282 0.67 -1.8 58,829 - Ac3H11_4282 0.67 -1.4 58,829 - Ac3H11_4282 0.67 +0.7 58,829 - Ac3H11_4282 0.67 -0.8 58,829 - Ac3H11_4282 0.67 +1.1 58,829 - Ac3H11_4282 0.67 -0.3 58,829 - Ac3H11_4282 0.67 -0.7 58,829 - Ac3H11_4282 0.67 +0.3 58,829 - Ac3H11_4282 0.67 -0.9 58,829 - Ac3H11_4282 0.67 +0.2 58,876 + Ac3H11_4282 0.72 -0.1 58,877 - Ac3H11_4282 0.72 +0.8 58,993 + Ac3H11_4282 0.86 +0.3 58,994 - Ac3H11_4282 0.86 -1.6 58,994 - Ac3H11_4282 0.86 -1.3 59,034 + +0.4 59,035 - +0.1 59,035 - +2.2 59,035 - -2.6
Or see this region's nucleotide sequence