Strain Fitness in Acidovorax sp. GW101-3H11 around Ac3H11_4187

Experiment: D-Lactate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAc3H11_4186 and Ac3H11_4187 are separated by 125 nucleotidesAc3H11_4187 and Ac3H11_4228 are separated by 217 nucleotidesAc3H11_4228 and Ac3H11_4188 are separated by 232 nucleotidesAc3H11_4188 and Ac3H11_4189 are separated by 85 nucleotides Ac3H11_4186 - putative membrane protein, at 443,091 to 444,284 _4186 Ac3H11_4187 - Thiosulfate sulfurtransferase, rhodanese (EC 2.8.1.1), at 444,410 to 445,378 _4187 Ac3H11_4228 - tRNA-Gly-CCC, at 445,596 to 445,666 _4228 Ac3H11_4188 - hypothetical protein, at 445,899 to 446,261 _4188 Ac3H11_4189 - Methyl-accepting chemotaxis protein I (serine chemoreceptor protein), at 446,347 to 448,326 _4189 Position (kb) 444 445 446Strain fitness (log2 ratio) -2 -1 0 1 2 3 4 5 6at 443.608 kb on + strand, within Ac3H11_4186at 443.608 kb on + strand, within Ac3H11_4186at 443.609 kb on - strand, within Ac3H11_4186at 443.609 kb on - strand, within Ac3H11_4186at 443.609 kb on - strand, within Ac3H11_4186at 443.609 kb on - strand, within Ac3H11_4186at 443.609 kb on - strand, within Ac3H11_4186at 443.779 kb on + strand, within Ac3H11_4186at 443.779 kb on + strand, within Ac3H11_4186at 443.779 kb on + strand, within Ac3H11_4186at 443.779 kb on + strand, within Ac3H11_4186at 444.026 kb on + strand, within Ac3H11_4186at 444.026 kb on + strand, within Ac3H11_4186at 444.026 kb on + strand, within Ac3H11_4186at 444.026 kb on + strand, within Ac3H11_4186at 444.027 kb on - strand, within Ac3H11_4186at 444.027 kb on - strand, within Ac3H11_4186at 444.028 kb on + strand, within Ac3H11_4186at 444.029 kb on - strand, within Ac3H11_4186at 444.116 kb on - strand, within Ac3H11_4186at 444.299 kb on + strandat 444.325 kb on + strandat 444.326 kb on - strandat 444.340 kb on - strandat 444.492 kb on + strandat 444.492 kb on + strandat 444.492 kb on + strandat 444.492 kb on + strandat 444.493 kb on - strandat 444.507 kb on + strand, within Ac3H11_4187at 444.567 kb on + strand, within Ac3H11_4187at 444.568 kb on - strand, within Ac3H11_4187at 444.568 kb on - strand, within Ac3H11_4187at 444.568 kb on - strand, within Ac3H11_4187at 444.568 kb on - strand, within Ac3H11_4187at 444.609 kb on + strand, within Ac3H11_4187at 444.609 kb on + strand, within Ac3H11_4187at 444.609 kb on + strand, within Ac3H11_4187at 444.609 kb on + strand, within Ac3H11_4187at 444.610 kb on - strand, within Ac3H11_4187at 444.610 kb on - strand, within Ac3H11_4187at 444.610 kb on - strand, within Ac3H11_4187at 444.610 kb on - strand, within Ac3H11_4187at 444.610 kb on - strand, within Ac3H11_4187at 444.753 kb on + strand, within Ac3H11_4187at 444.754 kb on - strand, within Ac3H11_4187at 444.864 kb on + strand, within Ac3H11_4187at 444.864 kb on + strand, within Ac3H11_4187at 444.864 kb on + strand, within Ac3H11_4187at 444.864 kb on + strand, within Ac3H11_4187at 444.865 kb on - strand, within Ac3H11_4187at 444.966 kb on + strand, within Ac3H11_4187at 444.966 kb on + strand, within Ac3H11_4187at 444.966 kb on + strand, within Ac3H11_4187at 444.966 kb on + strand, within Ac3H11_4187at 444.966 kb on + strand, within Ac3H11_4187at 444.966 kb on + strand, within Ac3H11_4187at 444.966 kb on + strand, within Ac3H11_4187at 444.966 kb on + strand, within Ac3H11_4187at 444.966 kb on + strand, within Ac3H11_4187at 444.966 kb on + strand, within Ac3H11_4187at 444.966 kb on + strand, within Ac3H11_4187at 444.966 kb on + strand, within Ac3H11_4187at 444.966 kb on + strand, within Ac3H11_4187at 444.966 kb on + strand, within Ac3H11_4187at 444.967 kb on - strand, within Ac3H11_4187at 444.967 kb on - strand, within Ac3H11_4187at 444.967 kb on - strand, within Ac3H11_4187at 444.967 kb on - strand, within Ac3H11_4187at 444.967 kb on - strand, within Ac3H11_4187at 444.967 kb on - strand, within Ac3H11_4187at 444.967 kb on - strand, within Ac3H11_4187at 444.967 kb on - strand, within Ac3H11_4187at 444.967 kb on - strand, within Ac3H11_4187at 444.967 kb on - strand, within Ac3H11_4187at 444.967 kb on - strand, within Ac3H11_4187at 445.021 kb on - strand, within Ac3H11_4187at 445.021 kb on - strand, within Ac3H11_4187at 445.168 kb on - strand, within Ac3H11_4187at 445.476 kb on + strandat 445.476 kb on + strandat 445.476 kb on + strandat 445.482 kb on + strandat 445.574 kb on + strandat 445.575 kb on - strandat 445.622 kb on + strand, within Ac3H11_4228at 445.622 kb on + strand, within Ac3H11_4228at 445.622 kb on + strand, within Ac3H11_4228at 445.622 kb on + strand, within Ac3H11_4228at 445.622 kb on + strand, within Ac3H11_4228at 445.623 kb on - strand, within Ac3H11_4228at 445.623 kb on - strand, within Ac3H11_4228at 445.623 kb on - strand, within Ac3H11_4228at 445.647 kb on + strand, within Ac3H11_4228at 445.647 kb on + strand, within Ac3H11_4228at 445.648 kb on - strand, within Ac3H11_4228at 445.648 kb on - strand, within Ac3H11_4228at 445.648 kb on - strand, within Ac3H11_4228at 445.648 kb on - strand, within Ac3H11_4228at 445.658 kb on + strand, within Ac3H11_4228at 445.659 kb on - strand, within Ac3H11_4228at 445.659 kb on - strand, within Ac3H11_4228at 445.659 kb on - strand, within Ac3H11_4228at 445.673 kb on + strandat 445.759 kb on - strandat 445.764 kb on - strandat 445.764 kb on - strandat 445.859 kb on + strandat 445.859 kb on + strandat 445.860 kb on - strandat 446.098 kb on - strand, within Ac3H11_4188at 446.098 kb on - strand, within Ac3H11_4188at 446.115 kb on + strand, within Ac3H11_4188at 446.115 kb on + strand, within Ac3H11_4188at 446.115 kb on + strand, within Ac3H11_4188at 446.115 kb on + strand, within Ac3H11_4188at 446.115 kb on + strand, within Ac3H11_4188at 446.115 kb on + strand, within Ac3H11_4188at 446.127 kb on + strand, within Ac3H11_4188at 446.127 kb on + strand, within Ac3H11_4188at 446.128 kb on - strand, within Ac3H11_4188at 446.128 kb on - strand, within Ac3H11_4188at 446.333 kb on - strandat 446.333 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Lactate (C)
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443,608 + Ac3H11_4186 0.43 +1.2
443,608 + Ac3H11_4186 0.43 +0.1
443,609 - Ac3H11_4186 0.43 +0.9
443,609 - Ac3H11_4186 0.43 +2.3
443,609 - Ac3H11_4186 0.43 -0.4
443,609 - Ac3H11_4186 0.43 +0.3
443,609 - Ac3H11_4186 0.43 -1.2
443,779 + Ac3H11_4186 0.58 +0.1
443,779 + Ac3H11_4186 0.58 +0.2
443,779 + Ac3H11_4186 0.58 +0.4
443,779 + Ac3H11_4186 0.58 +0.3
444,026 + Ac3H11_4186 0.78 -0.2
444,026 + Ac3H11_4186 0.78 +1.1
444,026 + Ac3H11_4186 0.78 +0.9
444,026 + Ac3H11_4186 0.78 +1.5
444,027 - Ac3H11_4186 0.78 -0.4
444,027 - Ac3H11_4186 0.78 -0.2
444,028 + Ac3H11_4186 0.78 -0.7
444,029 - Ac3H11_4186 0.79 +0.5
444,116 - Ac3H11_4186 0.86 +1.2
444,299 + +0.5
444,325 + +0.2
444,326 - -0.5
444,340 - +0.6
444,492 + +0.2
444,492 + -0.0
444,492 + +0.6
444,492 + +0.4
444,493 - +0.8
444,507 + Ac3H11_4187 0.10 -0.1
444,567 + Ac3H11_4187 0.16 -1.5
444,568 - Ac3H11_4187 0.16 +0.2
444,568 - Ac3H11_4187 0.16 +0.6
444,568 - Ac3H11_4187 0.16 -0.2
444,568 - Ac3H11_4187 0.16 +1.4
444,609 + Ac3H11_4187 0.21 +5.9
444,609 + Ac3H11_4187 0.21 +0.8
444,609 + Ac3H11_4187 0.21 +0.0
444,609 + Ac3H11_4187 0.21 -1.1
444,610 - Ac3H11_4187 0.21 -1.2
444,610 - Ac3H11_4187 0.21 +0.7
444,610 - Ac3H11_4187 0.21 +1.6
444,610 - Ac3H11_4187 0.21 +1.9
444,610 - Ac3H11_4187 0.21 -0.1
444,753 + Ac3H11_4187 0.35 +0.0
444,754 - Ac3H11_4187 0.36 -0.3
444,864 + Ac3H11_4187 0.47 +0.1
444,864 + Ac3H11_4187 0.47 +1.0
444,864 + Ac3H11_4187 0.47 -0.5
444,864 + Ac3H11_4187 0.47 -0.9
444,865 - Ac3H11_4187 0.47 +0.1
444,966 + Ac3H11_4187 0.57 +0.2
444,966 + Ac3H11_4187 0.57 +0.3
444,966 + Ac3H11_4187 0.57 -0.3
444,966 + Ac3H11_4187 0.57 -1.9
444,966 + Ac3H11_4187 0.57 +0.4
444,966 + Ac3H11_4187 0.57 +2.6
444,966 + Ac3H11_4187 0.57 +0.1
444,966 + Ac3H11_4187 0.57 +0.2
444,966 + Ac3H11_4187 0.57 +0.7
444,966 + Ac3H11_4187 0.57 +0.6
444,966 + Ac3H11_4187 0.57 -0.6
444,966 + Ac3H11_4187 0.57 +0.6
444,966 + Ac3H11_4187 0.57 +0.3
444,966 + Ac3H11_4187 0.57 +0.2
444,967 - Ac3H11_4187 0.57 +0.2
444,967 - Ac3H11_4187 0.57 +1.3
444,967 - Ac3H11_4187 0.57 +0.4
444,967 - Ac3H11_4187 0.57 +0.1
444,967 - Ac3H11_4187 0.57 -0.0
444,967 - Ac3H11_4187 0.57 +0.2
444,967 - Ac3H11_4187 0.57 -0.8
444,967 - Ac3H11_4187 0.57 +0.2
444,967 - Ac3H11_4187 0.57 +0.7
444,967 - Ac3H11_4187 0.57 +0.1
444,967 - Ac3H11_4187 0.57 +0.3
445,021 - Ac3H11_4187 0.63 -2.1
445,021 - Ac3H11_4187 0.63 +0.3
445,168 - Ac3H11_4187 0.78 -0.1
445,476 + +0.2
445,476 + +0.5
445,476 + +0.2
445,482 + +0.7
445,574 + +1.0
445,575 - -0.5
445,622 + Ac3H11_4228 0.37 +0.6
445,622 + Ac3H11_4228 0.37 +0.5
445,622 + Ac3H11_4228 0.37 +1.8
445,622 + Ac3H11_4228 0.37 -0.0
445,622 + Ac3H11_4228 0.37 +1.2
445,623 - Ac3H11_4228 0.38 +1.0
445,623 - Ac3H11_4228 0.38 -0.9
445,623 - Ac3H11_4228 0.38 -0.1
445,647 + Ac3H11_4228 0.72 -0.4
445,647 + Ac3H11_4228 0.72 -1.1
445,648 - Ac3H11_4228 0.73 +0.9
445,648 - Ac3H11_4228 0.73 -0.4
445,648 - Ac3H11_4228 0.73 +0.8
445,648 - Ac3H11_4228 0.73 +0.1
445,658 + Ac3H11_4228 0.87 -0.7
445,659 - Ac3H11_4228 0.89 -0.5
445,659 - Ac3H11_4228 0.89 -0.3
445,659 - Ac3H11_4228 0.89 +0.4
445,673 + +0.1
445,759 - -0.2
445,764 - +0.8
445,764 - -0.2
445,859 + -0.1
445,859 + +0.6
445,860 - +0.8
446,098 - Ac3H11_4188 0.55 +0.6
446,098 - Ac3H11_4188 0.55 +0.8
446,115 + Ac3H11_4188 0.60 +0.5
446,115 + Ac3H11_4188 0.60 -1.8
446,115 + Ac3H11_4188 0.60 -0.1
446,115 + Ac3H11_4188 0.60 +0.4
446,115 + Ac3H11_4188 0.60 +1.0
446,115 + Ac3H11_4188 0.60 -0.5
446,127 + Ac3H11_4188 0.63 +0.3
446,127 + Ac3H11_4188 0.63 -0.7
446,128 - Ac3H11_4188 0.63 +0.6
446,128 - Ac3H11_4188 0.63 -0.8
446,333 - +0.3
446,333 - +0.1

Or see this region's nucleotide sequence