Experiment: D-Lactate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Ac3H11_3834 and Ac3H11_3835 are separated by 59 nucleotides Ac3H11_3835 and Ac3H11_3836 are separated by 61 nucleotides Ac3H11_3836 and Ac3H11_3837 are separated by 41 nucleotides
Ac3H11_3834 - hydrolase, alpha/beta fold family, at 50,355 to 51,245
_3834
Ac3H11_3835 - Probable 5-carboxymethyl-2-hydroxymuconate delta isomerase, at 51,305 to 51,664
_3835
Ac3H11_3836 - Para-aminobenzoate synthase, aminase component (EC 2.6.1.85) / Aminodeoxychorismate lyase (EC 4.1.3.38), at 51,726 to 53,558
_3836
Ac3H11_3837 - Quinolinate synthetase (EC 2.5.1.72), at 53,600 to 54,730
_3837
Position (kb) 51
52
53
54 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 50.791 kb on - strand, within Ac3H11_3834 at 50.935 kb on + strand, within Ac3H11_3834 at 50.935 kb on + strand, within Ac3H11_3834 at 50.935 kb on + strand, within Ac3H11_3834 at 50.935 kb on + strand, within Ac3H11_3834 at 50.994 kb on + strand, within Ac3H11_3834 at 50.994 kb on + strand, within Ac3H11_3834 at 50.995 kb on - strand, within Ac3H11_3834 at 50.995 kb on - strand, within Ac3H11_3834 at 50.995 kb on - strand, within Ac3H11_3834 at 51.115 kb on - strand, within Ac3H11_3834 at 51.115 kb on - strand, within Ac3H11_3834 at 51.272 kb on + strand at 51.273 kb on - strand at 51.326 kb on + strand at 51.327 kb on - strand at 51.327 kb on - strand at 51.644 kb on + strand at 51.644 kb on + strand at 51.645 kb on - strand at 51.645 kb on - strand at 51.645 kb on - strand at 51.673 kb on + strand at 52.013 kb on - strand, within Ac3H11_3836 at 52.037 kb on - strand, within Ac3H11_3836 at 52.570 kb on + strand, within Ac3H11_3836 at 52.866 kb on + strand, within Ac3H11_3836 at 52.866 kb on + strand, within Ac3H11_3836 at 52.867 kb on - strand, within Ac3H11_3836 at 52.867 kb on - strand, within Ac3H11_3836 at 53.122 kb on + strand, within Ac3H11_3836 at 53.123 kb on - strand, within Ac3H11_3836 at 53.270 kb on - strand, within Ac3H11_3836 at 53.270 kb on - strand, within Ac3H11_3836 at 53.270 kb on - strand, within Ac3H11_3836 at 53.563 kb on - strand at 53.728 kb on + strand, within Ac3H11_3837 at 53.728 kb on + strand, within Ac3H11_3837 at 53.841 kb on + strand, within Ac3H11_3837 at 53.841 kb on + strand, within Ac3H11_3837 at 53.842 kb on - strand, within Ac3H11_3837 at 53.842 kb on - strand, within Ac3H11_3837 at 54.129 kb on + strand, within Ac3H11_3837 at 54.130 kb on - strand, within Ac3H11_3837 at 54.130 kb on - strand, within Ac3H11_3837 at 54.242 kb on + strand, within Ac3H11_3837 at 54.242 kb on + strand, within Ac3H11_3837 at 54.243 kb on - strand, within Ac3H11_3837 at 54.264 kb on + strand, within Ac3H11_3837 at 54.265 kb on - strand, within Ac3H11_3837 at 54.265 kb on - strand, within Ac3H11_3837 at 54.534 kb on + strand, within Ac3H11_3837 at 54.534 kb on + strand, within Ac3H11_3837 at 54.534 kb on + strand, within Ac3H11_3837 at 54.534 kb on + strand, within Ac3H11_3837 at 54.534 kb on + strand, within Ac3H11_3837 at 54.534 kb on + strand, within Ac3H11_3837 at 54.534 kb on + strand, within Ac3H11_3837 at 54.535 kb on - strand, within Ac3H11_3837 at 54.535 kb on - strand, within Ac3H11_3837 at 54.535 kb on - strand, within Ac3H11_3837 at 54.535 kb on - strand, within Ac3H11_3837 at 54.537 kb on + strand, within Ac3H11_3837 at 54.537 kb on + strand, within Ac3H11_3837 at 54.538 kb on - strand, within Ac3H11_3837
Per-strain Table
Position Strand Gene LocusTag Fraction D-Lactate (C) remove 50,791 - Ac3H11_3834 0.49 +0.6 50,935 + Ac3H11_3834 0.65 -0.0 50,935 + Ac3H11_3834 0.65 +1.6 50,935 + Ac3H11_3834 0.65 -0.4 50,935 + Ac3H11_3834 0.65 +0.1 50,994 + Ac3H11_3834 0.72 -0.3 50,994 + Ac3H11_3834 0.72 +1.8 50,995 - Ac3H11_3834 0.72 -0.3 50,995 - Ac3H11_3834 0.72 +0.4 50,995 - Ac3H11_3834 0.72 +0.9 51,115 - Ac3H11_3834 0.85 +0.4 51,115 - Ac3H11_3834 0.85 -0.8 51,272 + -0.2 51,273 - -0.4 51,326 + +0.4 51,327 - -0.2 51,327 - +0.3 51,644 + -0.0 51,644 + +0.2 51,645 - -0.6 51,645 - +0.5 51,645 - -0.3 51,673 + +0.1 52,013 - Ac3H11_3836 0.16 +0.7 52,037 - Ac3H11_3836 0.17 +0.4 52,570 + Ac3H11_3836 0.46 +0.4 52,866 + Ac3H11_3836 0.62 +1.8 52,866 + Ac3H11_3836 0.62 +2.6 52,867 - Ac3H11_3836 0.62 -1.0 52,867 - Ac3H11_3836 0.62 -2.2 53,122 + Ac3H11_3836 0.76 -0.3 53,123 - Ac3H11_3836 0.76 -1.3 53,270 - Ac3H11_3836 0.84 -0.4 53,270 - Ac3H11_3836 0.84 -0.3 53,270 - Ac3H11_3836 0.84 +2.9 53,563 - +0.3 53,728 + Ac3H11_3837 0.11 -1.3 53,728 + Ac3H11_3837 0.11 -0.8 53,841 + Ac3H11_3837 0.21 -2.9 53,841 + Ac3H11_3837 0.21 -3.0 53,842 - Ac3H11_3837 0.21 -1.2 53,842 - Ac3H11_3837 0.21 -1.3 54,129 + Ac3H11_3837 0.47 -0.6 54,130 - Ac3H11_3837 0.47 -0.7 54,130 - Ac3H11_3837 0.47 -0.4 54,242 + Ac3H11_3837 0.57 -2.2 54,242 + Ac3H11_3837 0.57 +1.4 54,243 - Ac3H11_3837 0.57 +0.4 54,264 + Ac3H11_3837 0.59 -2.3 54,265 - Ac3H11_3837 0.59 -1.9 54,265 - Ac3H11_3837 0.59 +0.8 54,534 + Ac3H11_3837 0.83 -2.3 54,534 + Ac3H11_3837 0.83 +0.1 54,534 + Ac3H11_3837 0.83 -0.7 54,534 + Ac3H11_3837 0.83 -1.6 54,534 + Ac3H11_3837 0.83 -2.9 54,534 + Ac3H11_3837 0.83 -2.1 54,534 + Ac3H11_3837 0.83 -0.9 54,535 - Ac3H11_3837 0.83 -1.7 54,535 - Ac3H11_3837 0.83 -1.1 54,535 - Ac3H11_3837 0.83 -3.7 54,535 - Ac3H11_3837 0.83 -0.8 54,537 + Ac3H11_3837 0.83 -1.3 54,537 + Ac3H11_3837 0.83 -1.6 54,538 - Ac3H11_3837 0.83 -2.3
Or see this region's nucleotide sequence