Experiment: D-Lactate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Ac3H11_2183 and Ac3H11_2184 are separated by 229 nucleotides Ac3H11_2184 and Ac3H11_2185 are separated by 38 nucleotides Ac3H11_2185 and Ac3H11_2186 are separated by 53 nucleotides
Ac3H11_2183 - ADA regulatory protein / Methylated-DNA--protein-cysteine methyltransferase (EC 2.1.1.63), at 412,487 to 413,671
_2183
Ac3H11_2184 - FIG00348557: hypothetical protein, at 413,901 to 416,738
_2184
Ac3H11_2185 - hypothetical secreted protein, at 416,777 to 417,499
_2185
Ac3H11_2186 - Sensor protein basS/pmrB (EC 2.7.3.-), at 417,553 to 418,854
_2186
Position (kb) 413
414
415
416
417 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 413.112 kb on + strand, within Ac3H11_2183 at 413.113 kb on - strand, within Ac3H11_2183 at 413.187 kb on + strand, within Ac3H11_2183 at 413.188 kb on - strand, within Ac3H11_2183 at 413.482 kb on - strand, within Ac3H11_2183 at 413.482 kb on - strand, within Ac3H11_2183 at 413.482 kb on - strand, within Ac3H11_2183 at 413.482 kb on - strand, within Ac3H11_2183 at 413.741 kb on + strand at 413.742 kb on - strand at 413.742 kb on - strand at 413.742 kb on - strand at 414.157 kb on + strand at 414.157 kb on + strand at 414.157 kb on + strand at 414.157 kb on + strand at 414.348 kb on + strand, within Ac3H11_2184 at 414.348 kb on + strand, within Ac3H11_2184 at 414.397 kb on + strand, within Ac3H11_2184 at 414.398 kb on - strand, within Ac3H11_2184 at 414.694 kb on + strand, within Ac3H11_2184 at 415.109 kb on - strand, within Ac3H11_2184 at 415.109 kb on - strand, within Ac3H11_2184 at 415.109 kb on - strand, within Ac3H11_2184 at 415.347 kb on + strand, within Ac3H11_2184 at 415.348 kb on - strand, within Ac3H11_2184 at 415.348 kb on - strand, within Ac3H11_2184 at 415.375 kb on + strand, within Ac3H11_2184 at 415.376 kb on - strand, within Ac3H11_2184 at 416.269 kb on + strand, within Ac3H11_2184 at 416.353 kb on + strand, within Ac3H11_2184 at 416.354 kb on - strand, within Ac3H11_2184 at 416.738 kb on + strand at 416.738 kb on + strand at 416.738 kb on + strand at 416.738 kb on + strand at 416.739 kb on - strand at 416.766 kb on + strand at 416.766 kb on + strand at 416.766 kb on + strand at 416.767 kb on - strand at 416.767 kb on - strand at 416.767 kb on - strand at 416.767 kb on - strand at 417.181 kb on + strand, within Ac3H11_2185 at 417.182 kb on - strand, within Ac3H11_2185 at 417.263 kb on + strand, within Ac3H11_2185 at 417.263 kb on + strand, within Ac3H11_2185 at 417.264 kb on - strand, within Ac3H11_2185 at 417.525 kb on - strand at 417.686 kb on + strand, within Ac3H11_2186 at 417.686 kb on + strand, within Ac3H11_2186 at 417.687 kb on - strand, within Ac3H11_2186 at 417.687 kb on - strand, within Ac3H11_2186 at 417.687 kb on - strand, within Ac3H11_2186
Per-strain Table
Position Strand Gene LocusTag Fraction D-Lactate (C) remove 413,112 + Ac3H11_2183 0.53 -0.6 413,113 - Ac3H11_2183 0.53 +2.5 413,187 + Ac3H11_2183 0.59 -0.3 413,188 - Ac3H11_2183 0.59 -0.6 413,482 - Ac3H11_2183 0.84 -0.4 413,482 - Ac3H11_2183 0.84 -2.6 413,482 - Ac3H11_2183 0.84 +0.2 413,482 - Ac3H11_2183 0.84 +0.7 413,741 + -0.0 413,742 - +0.7 413,742 - -0.8 413,742 - +0.3 414,157 + +1.0 414,157 + +1.9 414,157 + -0.0 414,157 + -0.8 414,348 + Ac3H11_2184 0.16 +1.9 414,348 + Ac3H11_2184 0.16 +1.0 414,397 + Ac3H11_2184 0.17 +1.0 414,398 - Ac3H11_2184 0.18 -1.4 414,694 + Ac3H11_2184 0.28 +0.9 415,109 - Ac3H11_2184 0.43 +0.2 415,109 - Ac3H11_2184 0.43 -1.1 415,109 - Ac3H11_2184 0.43 +1.1 415,347 + Ac3H11_2184 0.51 +0.2 415,348 - Ac3H11_2184 0.51 +2.2 415,348 - Ac3H11_2184 0.51 -0.8 415,375 + Ac3H11_2184 0.52 +3.0 415,376 - Ac3H11_2184 0.52 +0.0 416,269 + Ac3H11_2184 0.83 -0.4 416,353 + Ac3H11_2184 0.86 +1.6 416,354 - Ac3H11_2184 0.86 -1.4 416,738 + -0.6 416,738 + -0.3 416,738 + -1.1 416,738 + -0.0 416,739 - +1.1 416,766 + -0.6 416,766 + -0.1 416,766 + +0.7 416,767 - -0.6 416,767 - +1.2 416,767 - +1.3 416,767 - +0.3 417,181 + Ac3H11_2185 0.56 +0.9 417,182 - Ac3H11_2185 0.56 +1.3 417,263 + Ac3H11_2185 0.67 +1.7 417,263 + Ac3H11_2185 0.67 -0.3 417,264 - Ac3H11_2185 0.67 -0.7 417,525 - +0.3 417,686 + Ac3H11_2186 0.10 +0.4 417,686 + Ac3H11_2186 0.10 -0.3 417,687 - Ac3H11_2186 0.10 -0.3 417,687 - Ac3H11_2186 0.10 +0.1 417,687 - Ac3H11_2186 0.10 +0.2
Or see this region's nucleotide sequence