Strain Fitness in Azospirillum brasilense Sp245 around AZOBR_RS33520

Experiment: D-Fructose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAZOBR_RS33515 and AZOBR_RS33520 are separated by 281 nucleotidesAZOBR_RS33520 and AZOBR_RS33525 are separated by 467 nucleotides AZOBR_RS33515: AZOBR_RS33515 - hypothetical protein, at 32,421 to 34,088 _RS33515 AZOBR_RS33520: AZOBR_RS33520 - putative protease-like protein, at 34,370 to 36,061 _RS33520 AZOBR_RS33525: AZOBR_RS33525 - FAD-dependent oxidoreductase, at 36,529 to 37,650 _RS33525 Position (kb) 34 35 36 37Strain fitness (log2 ratio) -3 -2 -1 0 1at 33.553 kb on + strand, within AZOBR_RS33515at 33.553 kb on + strand, within AZOBR_RS33515at 33.554 kb on - strand, within AZOBR_RS33515at 33.763 kb on + strand, within AZOBR_RS33515at 33.847 kb on + strand, within AZOBR_RS33515at 33.848 kb on - strand, within AZOBR_RS33515at 33.907 kb on + strand, within AZOBR_RS33515at 33.907 kb on + strand, within AZOBR_RS33515at 33.908 kb on - strand, within AZOBR_RS33515at 33.908 kb on - strand, within AZOBR_RS33515at 34.234 kb on + strandat 34.234 kb on + strandat 34.321 kb on + strandat 34.321 kb on + strandat 34.321 kb on + strandat 34.322 kb on - strandat 34.396 kb on - strandat 35.055 kb on + strand, within AZOBR_RS33520at 35.055 kb on + strand, within AZOBR_RS33520at 35.056 kb on - strand, within AZOBR_RS33520at 35.056 kb on - strand, within AZOBR_RS33520at 35.160 kb on + strand, within AZOBR_RS33520at 35.268 kb on + strand, within AZOBR_RS33520at 35.268 kb on + strand, within AZOBR_RS33520at 35.268 kb on + strand, within AZOBR_RS33520at 35.269 kb on - strand, within AZOBR_RS33520at 35.269 kb on - strand, within AZOBR_RS33520at 35.269 kb on - strand, within AZOBR_RS33520at 35.304 kb on + strand, within AZOBR_RS33520at 35.304 kb on + strand, within AZOBR_RS33520at 35.305 kb on - strand, within AZOBR_RS33520at 35.421 kb on + strand, within AZOBR_RS33520at 35.422 kb on - strand, within AZOBR_RS33520at 35.422 kb on - strand, within AZOBR_RS33520at 35.459 kb on + strand, within AZOBR_RS33520at 35.460 kb on + strand, within AZOBR_RS33520at 35.466 kb on + strand, within AZOBR_RS33520at 35.466 kb on + strand, within AZOBR_RS33520at 35.467 kb on - strand, within AZOBR_RS33520at 35.467 kb on - strand, within AZOBR_RS33520at 35.559 kb on + strand, within AZOBR_RS33520at 35.574 kb on + strand, within AZOBR_RS33520at 35.574 kb on + strand, within AZOBR_RS33520at 35.575 kb on - strand, within AZOBR_RS33520at 35.679 kb on + strand, within AZOBR_RS33520at 35.679 kb on + strand, within AZOBR_RS33520at 35.680 kb on - strand, within AZOBR_RS33520at 35.680 kb on - strand, within AZOBR_RS33520at 35.685 kb on + strand, within AZOBR_RS33520at 35.686 kb on - strand, within AZOBR_RS33520at 35.686 kb on - strand, within AZOBR_RS33520at 35.686 kb on - strand, within AZOBR_RS33520at 35.958 kb on + strandat 36.691 kb on + strand, within AZOBR_RS33525at 36.691 kb on + strand, within AZOBR_RS33525at 36.691 kb on + strand, within AZOBR_RS33525at 36.691 kb on + strand, within AZOBR_RS33525at 36.692 kb on - strand, within AZOBR_RS33525at 36.692 kb on - strand, within AZOBR_RS33525at 36.692 kb on - strand, within AZOBR_RS33525at 36.749 kb on - strand, within AZOBR_RS33525at 36.755 kb on - strand, within AZOBR_RS33525

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Fructose (C)
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33,553 + AZOBR_RS33515 0.68 -0.2
33,553 + AZOBR_RS33515 0.68 +0.6
33,554 - AZOBR_RS33515 0.68 +0.7
33,763 + AZOBR_RS33515 0.80 -0.0
33,847 + AZOBR_RS33515 0.85 +0.5
33,848 - AZOBR_RS33515 0.86 -0.3
33,907 + AZOBR_RS33515 0.89 +0.7
33,907 + AZOBR_RS33515 0.89 +0.2
33,908 - AZOBR_RS33515 0.89 -0.1
33,908 - AZOBR_RS33515 0.89 -0.4
34,234 + +0.6
34,234 + +0.4
34,321 + -0.1
34,321 + +0.2
34,321 + +0.7
34,322 - +0.4
34,396 - +1.0
35,055 + AZOBR_RS33520 0.40 +0.2
35,055 + AZOBR_RS33520 0.40 +0.2
35,056 - AZOBR_RS33520 0.41 +0.1
35,056 - AZOBR_RS33520 0.41 +0.3
35,160 + AZOBR_RS33520 0.47 -1.0
35,268 + AZOBR_RS33520 0.53 +0.5
35,268 + AZOBR_RS33520 0.53 +0.3
35,268 + AZOBR_RS33520 0.53 +0.0
35,269 - AZOBR_RS33520 0.53 -0.4
35,269 - AZOBR_RS33520 0.53 +0.9
35,269 - AZOBR_RS33520 0.53 +0.3
35,304 + AZOBR_RS33520 0.55 +0.4
35,304 + AZOBR_RS33520 0.55 +0.8
35,305 - AZOBR_RS33520 0.55 +0.7
35,421 + AZOBR_RS33520 0.62 -0.1
35,422 - AZOBR_RS33520 0.62 -0.1
35,422 - AZOBR_RS33520 0.62 +0.6
35,459 + AZOBR_RS33520 0.64 -0.3
35,460 + AZOBR_RS33520 0.64 +0.2
35,466 + AZOBR_RS33520 0.65 +0.5
35,466 + AZOBR_RS33520 0.65 -2.8
35,467 - AZOBR_RS33520 0.65 +0.1
35,467 - AZOBR_RS33520 0.65 +0.9
35,559 + AZOBR_RS33520 0.70 -0.3
35,574 + AZOBR_RS33520 0.71 -1.0
35,574 + AZOBR_RS33520 0.71 -0.3
35,575 - AZOBR_RS33520 0.71 +0.0
35,679 + AZOBR_RS33520 0.77 +0.6
35,679 + AZOBR_RS33520 0.77 +0.5
35,680 - AZOBR_RS33520 0.77 +0.2
35,680 - AZOBR_RS33520 0.77 +0.1
35,685 + AZOBR_RS33520 0.78 +0.1
35,686 - AZOBR_RS33520 0.78 +0.2
35,686 - AZOBR_RS33520 0.78 +0.5
35,686 - AZOBR_RS33520 0.78 +0.4
35,958 + +0.1
36,691 + AZOBR_RS33525 0.14 +0.6
36,691 + AZOBR_RS33525 0.14 +0.2
36,691 + AZOBR_RS33525 0.14 +0.6
36,691 + AZOBR_RS33525 0.14 +0.6
36,692 - AZOBR_RS33525 0.15 +1.2
36,692 - AZOBR_RS33525 0.15 +0.0
36,692 - AZOBR_RS33525 0.15 +0.1
36,749 - AZOBR_RS33525 0.20 +0.2
36,755 - AZOBR_RS33525 0.20 +0.4

Or see this region's nucleotide sequence