Strain Fitness in Azospirillum brasilense Sp245 around AZOBR_RS11880

Experiment: D-Fructose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF2272 and GFF2273 are separated by 100 nucleotidesGFF2273 and AZOBR_RS11880 are separated by 19 nucleotidesAZOBR_RS11880 and AZOBR_RS11885 are separated by 169 nucleotides GFF2272 - gamma-glutamyltranspeptidase, at 2,497,219 to 2,498,248 GFF2272 GFF2273 - gamma-glutamyltranspeptidase, at 2,498,349 to 2,498,598 GFF2273 AZOBR_RS11880: AZOBR_RS11880 - 1-aminocyclopropane-1-carboxylate deaminase, at 2,498,618 to 2,499,772 _RS11880 AZOBR_RS11885: AZOBR_RS11885 - glutamate--cysteine ligase, at 2,499,942 to 2,501,306 _RS11885 Position (kb) 2498 2499 2500Strain fitness (log2 ratio) -1 0 1at 2497.810 kb on + strand, within GFF2272at 2497.810 kb on + strand, within GFF2272at 2498.997 kb on - strand, within AZOBR_RS11880at 2499.236 kb on + strand, within AZOBR_RS11880at 2499.236 kb on + strand, within AZOBR_RS11880at 2499.237 kb on - strand, within AZOBR_RS11880at 2499.321 kb on - strand, within AZOBR_RS11880at 2499.321 kb on - strand, within AZOBR_RS11880at 2499.572 kb on + strand, within AZOBR_RS11880at 2499.572 kb on + strand, within AZOBR_RS11880at 2499.572 kb on + strand, within AZOBR_RS11880at 2499.572 kb on + strand, within AZOBR_RS11880at 2499.572 kb on + strand, within AZOBR_RS11880at 2499.573 kb on - strand, within AZOBR_RS11880at 2499.573 kb on - strand, within AZOBR_RS11880at 2499.573 kb on - strand, within AZOBR_RS11880at 2499.579 kb on - strand, within AZOBR_RS11880at 2499.771 kb on - strandat 2499.771 kb on - strandat 2499.947 kb on - strandat 2499.947 kb on - strandat 2499.952 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Fructose (C)
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2,497,810 + GFF2272 0.57 +0.6
2,497,810 + GFF2272 0.57 -0.0
2,498,997 - AZOBR_RS11880 0.33 +0.3
2,499,236 + AZOBR_RS11880 0.54 -0.3
2,499,236 + AZOBR_RS11880 0.54 +0.8
2,499,237 - AZOBR_RS11880 0.54 -0.4
2,499,321 - AZOBR_RS11880 0.61 +0.0
2,499,321 - AZOBR_RS11880 0.61 -0.1
2,499,572 + AZOBR_RS11880 0.83 -0.9
2,499,572 + AZOBR_RS11880 0.83 +0.3
2,499,572 + AZOBR_RS11880 0.83 -0.1
2,499,572 + AZOBR_RS11880 0.83 +0.0
2,499,572 + AZOBR_RS11880 0.83 +0.3
2,499,573 - AZOBR_RS11880 0.83 -0.2
2,499,573 - AZOBR_RS11880 0.83 +0.2
2,499,573 - AZOBR_RS11880 0.83 -0.1
2,499,579 - AZOBR_RS11880 0.83 +0.1
2,499,771 - -0.7
2,499,771 - +0.3
2,499,947 - +0.0
2,499,947 - +0.9
2,499,952 + -0.9

Or see this region's nucleotide sequence