Strain Fitness in Azospirillum brasilense Sp245 around AZOBR_RS08640

Experiment: D-Fructose (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntAZOBR_RS08625 and AZOBR_RS08630 are separated by 49 nucleotidesAZOBR_RS08630 and AZOBR_RS08635 are separated by 10 nucleotidesAZOBR_RS08635 and AZOBR_RS08640 are separated by 442 nucleotidesAZOBR_RS08640 and AZOBR_RS08645 are separated by 332 nucleotidesAZOBR_RS08645 and AZOBR_RS08650 are separated by 43 nucleotides AZOBR_RS08625: AZOBR_RS08625 - tRNA-Pro, at 1,808,815 to 1,808,892 _RS08625 AZOBR_RS08630: AZOBR_RS08630 - putative NADH-ubiquinone oxidoreductase, at 1,808,942 to 1,809,238 _RS08630 AZOBR_RS08635: AZOBR_RS08635 - tRNA-Arg, at 1,809,249 to 1,809,325 _RS08635 AZOBR_RS08640: AZOBR_RS08640 - hypothetical protein, at 1,809,768 to 1,810,013 _RS08640 AZOBR_RS08645: AZOBR_RS08645 - phosphoribosyl-AMP cyclohydrolase, at 1,810,346 to 1,810,780 _RS08645 AZOBR_RS08650: AZOBR_RS08650 - cystathionine beta-lyase, at 1,810,824 to 1,812,002 _RS08650 Position (kb) 1809 1810 1811Strain fitness (log2 ratio) -3 -2 -1 0 1at 1808.921 kb on + strandat 1809.155 kb on + strand, within AZOBR_RS08630at 1809.200 kb on + strand, within AZOBR_RS08630at 1809.480 kb on - strandat 1809.500 kb on + strandat 1809.501 kb on - strandat 1809.557 kb on + strandat 1809.673 kb on - strandat 1809.680 kb on + strandat 1809.681 kb on - strandat 1809.754 kb on + strandat 1809.755 kb on - strandat 1809.755 kb on - strandat 1809.755 kb on - strandat 1809.755 kb on - strandat 1810.082 kb on + strandat 1810.999 kb on + strand, within AZOBR_RS08650at 1810.999 kb on + strand, within AZOBR_RS08650at 1811.000 kb on - strand, within AZOBR_RS08650

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction D-Fructose (C)
remove
1,808,921 + -1.1
1,809,155 + AZOBR_RS08630 0.72 -1.4
1,809,200 + AZOBR_RS08630 0.87 -0.2
1,809,480 - -0.6
1,809,500 + +0.5
1,809,501 - +0.5
1,809,557 + +0.1
1,809,673 - -1.2
1,809,680 + -0.2
1,809,681 - +0.4
1,809,754 + +0.3
1,809,755 - +0.0
1,809,755 - -0.2
1,809,755 - +0.2
1,809,755 - +1.2
1,810,082 + -0.3
1,810,999 + AZOBR_RS08650 0.15 -2.5
1,810,999 + AZOBR_RS08650 0.15 -3.2
1,811,000 - AZOBR_RS08650 0.15 -0.6

Or see this region's nucleotide sequence