Experiment: D-Fructose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AZOBR_RS08625 and AZOBR_RS08630 are separated by 49 nucleotides AZOBR_RS08630 and AZOBR_RS08635 are separated by 10 nucleotides AZOBR_RS08635 and AZOBR_RS08640 are separated by 442 nucleotides AZOBR_RS08640 and AZOBR_RS08645 are separated by 332 nucleotides AZOBR_RS08645 and AZOBR_RS08650 are separated by 43 nucleotides
AZOBR_RS08625: AZOBR_RS08625 - tRNA-Pro, at 1,808,815 to 1,808,892
_RS08625
AZOBR_RS08630: AZOBR_RS08630 - putative NADH-ubiquinone oxidoreductase, at 1,808,942 to 1,809,238
_RS08630
AZOBR_RS08635: AZOBR_RS08635 - tRNA-Arg, at 1,809,249 to 1,809,325
_RS08635
AZOBR_RS08640: AZOBR_RS08640 - hypothetical protein, at 1,809,768 to 1,810,013
_RS08640
AZOBR_RS08645: AZOBR_RS08645 - phosphoribosyl-AMP cyclohydrolase, at 1,810,346 to 1,810,780
_RS08645
AZOBR_RS08650: AZOBR_RS08650 - cystathionine beta-lyase, at 1,810,824 to 1,812,002
_RS08650
Position (kb)
1809
1810
1811 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 1808.921 kb on + strand at 1809.155 kb on + strand, within AZOBR_RS08630 at 1809.200 kb on + strand, within AZOBR_RS08630 at 1809.480 kb on - strand at 1809.500 kb on + strand at 1809.501 kb on - strand at 1809.557 kb on + strand at 1809.673 kb on - strand at 1809.680 kb on + strand at 1809.681 kb on - strand at 1809.754 kb on + strand at 1809.755 kb on - strand at 1809.755 kb on - strand at 1809.755 kb on - strand at 1809.755 kb on - strand at 1810.082 kb on + strand at 1810.999 kb on + strand, within AZOBR_RS08650 at 1810.999 kb on + strand, within AZOBR_RS08650 at 1811.000 kb on - strand, within AZOBR_RS08650
Per-strain Table
Position Strand Gene LocusTag Fraction D-Fructose (C) remove 1,808,921 + -1.1 1,809,155 + AZOBR_RS08630 0.72 -1.4 1,809,200 + AZOBR_RS08630 0.87 -0.2 1,809,480 - -0.6 1,809,500 + +0.5 1,809,501 - +0.5 1,809,557 + +0.1 1,809,673 - -1.2 1,809,680 + -0.2 1,809,681 - +0.4 1,809,754 + +0.3 1,809,755 - +0.0 1,809,755 - -0.2 1,809,755 - +0.2 1,809,755 - +1.2 1,810,082 + -0.3 1,810,999 + AZOBR_RS08650 0.15 -2.5 1,810,999 + AZOBR_RS08650 0.15 -3.2 1,811,000 - AZOBR_RS08650 0.15 -0.6
Or see this region's nucleotide sequence