Experiment: D-Fructose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AZOBR_RS07455 and AZOBR_RS07460 overlap by 4 nucleotides AZOBR_RS07460 and AZOBR_RS07465 are separated by 169 nucleotides AZOBR_RS07465 and AZOBR_RS07470 are separated by 119 nucleotides
AZOBR_RS07455: AZOBR_RS07455 - anthranilate phosphoribosyltransferase, at 1,569,570 to 1,570,643
_RS07455
AZOBR_RS07460: AZOBR_RS07460 - anthranilate synthase, at 1,570,640 to 1,571,230
_RS07460
AZOBR_RS07465: AZOBR_RS07465 - hypothetical protein, at 1,571,400 to 1,571,864
_RS07465
AZOBR_RS07470: AZOBR_RS07470 - hypothetical protein, at 1,571,984 to 1,573,183
_RS07470
Position (kb) 1570
1571
1572 Strain fitness (log2 ratio) -6
-5
-4
-3
-2
-1
0
1 at 1570.345 kb on + strand, within AZOBR_RS07455 at 1570.345 kb on + strand, within AZOBR_RS07455 at 1570.346 kb on - strand, within AZOBR_RS07455 at 1571.178 kb on + strand at 1571.193 kb on + strand at 1571.193 kb on + strand at 1571.209 kb on - strand at 1571.879 kb on + strand at 1571.880 kb on - strand at 1571.880 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction D-Fructose (C) remove 1,570,345 + AZOBR_RS07455 0.72 +0.6 1,570,345 + AZOBR_RS07455 0.72 -4.5 1,570,346 - AZOBR_RS07455 0.72 -4.5 1,571,178 + -6.3 1,571,193 + -3.4 1,571,193 + -2.5 1,571,209 - -3.4 1,571,879 + -0.4 1,571,880 - +0.1 1,571,880 - -2.3
Or see this region's nucleotide sequence