Strain Fitness in Azospirillum brasilense Sp245 around AZOBR_RS04335

Experiment: D-Fructose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAZOBR_RS04325 and AZOBR_RS04330 are separated by 47 nucleotidesAZOBR_RS04330 and AZOBR_RS04335 are separated by 306 nucleotidesAZOBR_RS04335 and AZOBR_RS04340 overlap by 4 nucleotidesAZOBR_RS04340 and AZOBR_RS04345 are separated by 99 nucleotides AZOBR_RS04325: AZOBR_RS04325 - glutaredoxin, at 908,764 to 909,105 _RS04325 AZOBR_RS04330: AZOBR_RS04330 - ATP-binding protein, at 909,153 to 909,392 _RS04330 AZOBR_RS04335: AZOBR_RS04335 - phosphoribosylformylglycinamidine synthase, at 909,699 to 911,915 _RS04335 AZOBR_RS04340: AZOBR_RS04340 - phosphoribosylformylglycinamidine synthase, at 911,912 to 912,616 _RS04340 AZOBR_RS04345: AZOBR_RS04345 - transcriptional regulator LysR family, at 912,716 to 913,612 _RS04345 Position (kb) 909 910 911 912Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2at 909.122 kb on - strandat 909.122 kb on - strandat 909.155 kb on - strandat 909.441 kb on - strandat 909.443 kb on - strandat 909.718 kb on + strandat 909.718 kb on + strandat 909.718 kb on + strandat 909.719 kb on - strandat 909.892 kb on + strandat 909.892 kb on + strandat 910.640 kb on - strand, within AZOBR_RS04335at 911.326 kb on + strand, within AZOBR_RS04335at 911.389 kb on + strand, within AZOBR_RS04335at 911.614 kb on + strand, within AZOBR_RS04335at 911.758 kb on + strandat 911.759 kb on - strandat 911.759 kb on - strandat 911.845 kb on + strandat 911.846 kb on - strandat 912.668 kb on - strandat 912.813 kb on + strand, within AZOBR_RS04345at 912.814 kb on - strand, within AZOBR_RS04345at 912.814 kb on - strand, within AZOBR_RS04345at 912.814 kb on - strand, within AZOBR_RS04345at 912.816 kb on + strand, within AZOBR_RS04345at 912.816 kb on + strand, within AZOBR_RS04345at 912.816 kb on + strand, within AZOBR_RS04345at 912.816 kb on + strand, within AZOBR_RS04345at 912.816 kb on + strand, within AZOBR_RS04345at 912.817 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Fructose (C)
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909,122 - +0.0
909,122 - +1.0
909,155 - +0.3
909,441 - -2.5
909,443 - +0.1
909,718 + -1.0
909,718 + -1.3
909,718 + -1.3
909,719 - -0.2
909,892 + -2.9
909,892 + -3.5
910,640 - AZOBR_RS04335 0.42 -3.6
911,326 + AZOBR_RS04335 0.73 -3.3
911,389 + AZOBR_RS04335 0.76 -3.3
911,614 + AZOBR_RS04335 0.86 -5.4
911,758 + -1.2
911,759 - -1.2
911,759 - -1.5
911,845 + -3.1
911,846 - +2.0
912,668 - -5.1
912,813 + AZOBR_RS04345 0.11 -0.4
912,814 - AZOBR_RS04345 0.11 -1.4
912,814 - AZOBR_RS04345 0.11 +0.2
912,814 - AZOBR_RS04345 0.11 -0.8
912,816 + AZOBR_RS04345 0.11 +0.0
912,816 + AZOBR_RS04345 0.11 +0.4
912,816 + AZOBR_RS04345 0.11 +0.4
912,816 + AZOBR_RS04345 0.11 -0.1
912,816 + AZOBR_RS04345 0.11 -0.6
912,817 - +1.4

Or see this region's nucleotide sequence