Experiment: Mixed culture; Syntrophotalea carbinolica 1:1 starting OD to methanogen; 1,3-Propanediol_timecourse3; 20 generations
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MMP_RS04555 and MMP_RS04560 are separated by 22 nucleotides MMP_RS04560 and MMP_RS04565 are separated by 88 nucleotides MMP_RS04565 and MMP_RS04570 are separated by 271 nucleotides
MMP_RS04555: MMP_RS04555 - 7 8-didemethyl-8-hydroxy-5-deazariboflavin synthase subunit CofG, at 869,522 to 870,580
_RS04555
MMP_RS04560: MMP_RS04560 - carboxylating nicotinate-nucleotide diphosphorylase, at 870,603 to 871,442
_RS04560
MMP_RS04565: MMP_RS04565 - ribonuclease P, at 871,531 to 871,923
_RS04565
MMP_RS04570: MMP_RS04570 - serine--tRNA ligase, at 872,195 to 873,739
_RS04570
Position (kb) 871
872 Strain fitness (log2 ratio) -7
-6
-5
-4
-3
-2
-1
0
1 at 870.542 kb on + strand at 870.580 kb on - strand at 870.599 kb on - strand at 870.677 kb on - strand at 870.701 kb on - strand at 870.819 kb on - strand at 870.822 kb on - strand at 870.833 kb on - strand at 870.833 kb on - strand at 870.833 kb on - strand at 870.834 kb on + strand at 870.844 kb on + strand at 871.058 kb on - strand at 871.082 kb on - strand at 871.115 kb on - strand at 871.285 kb on + strand at 871.390 kb on + strand at 871.480 kb on - strand at 871.481 kb on + strand at 871.485 kb on + strand at 871.497 kb on + strand at 871.508 kb on + strand at 871.512 kb on - strand at 871.512 kb on - strand at 871.512 kb on - strand at 871.512 kb on - strand at 871.514 kb on - strand at 871.514 kb on - strand at 871.514 kb on - strand at 871.515 kb on + strand at 871.515 kb on + strand at 871.515 kb on + strand at 871.525 kb on - strand at 871.527 kb on - strand at 871.528 kb on + strand at 871.528 kb on + strand at 871.528 kb on + strand at 871.528 kb on + strand at 871.595 kb on + strand at 871.608 kb on + strand at 871.625 kb on - strand at 871.654 kb on - strand at 871.654 kb on - strand at 871.755 kb on + strand at 871.811 kb on - strand at 871.832 kb on - strand at 871.876 kb on - strand at 871.879 kb on - strand at 871.879 kb on - strand at 871.880 kb on + strand at 871.882 kb on + strand at 871.943 kb on - strand at 871.944 kb on + strand at 871.998 kb on - strand at 871.999 kb on + strand at 872.005 kb on + strand at 872.005 kb on + strand at 872.006 kb on - strand at 872.006 kb on - strand at 872.006 kb on - strand at 872.006 kb on - strand at 872.007 kb on + strand at 872.007 kb on + strand at 872.007 kb on + strand at 872.007 kb on + strand at 872.009 kb on - strand at 872.014 kb on - strand at 872.015 kb on + strand at 872.031 kb on + strand at 872.034 kb on - strand at 872.041 kb on - strand at 872.042 kb on + strand at 872.046 kb on - strand at 872.046 kb on - strand at 872.046 kb on - strand at 872.047 kb on + strand at 872.047 kb on + strand at 872.059 kb on - strand at 872.060 kb on + strand at 872.077 kb on - strand at 872.077 kb on - strand at 872.077 kb on - strand at 872.077 kb on - strand at 872.078 kb on + strand at 872.078 kb on + strand at 872.082 kb on + strand at 872.088 kb on - strand at 872.098 kb on - strand at 872.183 kb on + strand at 872.210 kb on - strand at 872.252 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Mixed culture; Syntrophotalea carbinolica 1:1 starting OD to methanogen; 1,3-Propanediol_timecourse3; 20 generations remove 870,542 + -4.9 870,580 - -4.3 870,599 - -2.3 870,677 - -4.7 870,701 - -3.4 870,819 - -4.4 870,822 - -4.1 870,833 - -2.9 870,833 - -3.7 870,833 - -3.1 870,834 + -4.1 870,844 + -3.5 871,058 - -4.3 871,082 - -3.2 871,115 - -4.9 871,285 + -2.2 871,390 + -4.2 871,480 - -6.9 871,481 + -4.8 871,485 + -4.2 871,497 + -2.6 871,508 + -5.3 871,512 - -3.9 871,512 - -4.6 871,512 - -4.2 871,512 - -4.6 871,514 - -4.9 871,514 - -4.3 871,514 - -5.3 871,515 + -3.2 871,515 + -3.9 871,515 + -4.9 871,525 - -3.2 871,527 - -3.3 871,528 + -3.2 871,528 + -3.9 871,528 + -3.2 871,528 + -4.3 871,595 + -2.7 871,608 + -4.5 871,625 - -4.6 871,654 - -3.2 871,654 - -2.4 871,755 + -3.2 871,811 - -3.5 871,832 - -5.2 871,876 - -3.6 871,879 - -4.9 871,879 - -5.2 871,880 + -2.7 871,882 + -4.2 871,943 - -0.3 871,944 + +0.1 871,998 - +0.3 871,999 + +0.3 872,005 + +0.4 872,005 + +0.1 872,006 - -0.1 872,006 - +0.0 872,006 - -0.2 872,006 - -0.3 872,007 + +0.1 872,007 + +0.2 872,007 + -0.2 872,007 + -0.6 872,009 - +0.7 872,014 - -0.4 872,015 + +0.4 872,031 + +0.6 872,034 - +0.0 872,041 - -0.2 872,042 + +0.1 872,046 - -0.4 872,046 - +0.0 872,046 - -0.3 872,047 + +0.1 872,047 + -0.2 872,059 - +0.1 872,060 + -0.1 872,077 - +0.2 872,077 - -0.1 872,077 - -0.3 872,077 - -0.1 872,078 + +0.0 872,078 + +0.4 872,082 + +0.1 872,088 - -0.1 872,098 - -0.9 872,183 + +0.1 872,210 - -0.8 872,252 - -4.1
Or see this region's nucleotide sequence