Experiment: Mixed culture; Syntrophotalea carbinolica 1:1 starting OD to methanogen; 1,3-Propanediol_timecourse3; 20 generations
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MMP_RS03680 and MMP_RS03685 are separated by 40 nucleotides MMP_RS03685 and MMP_RS03690 are separated by 92 nucleotides
MMP_RS03680: MMP_RS03680 - hypothetical protein, at 693,345 to 694,367
_RS03680
MMP_RS03685: MMP_RS03685 - Mrp/NBP35 family ATP-binding protein, at 694,408 to 695,277
_RS03685
MMP_RS03690: MMP_RS03690 - UDP-N-acetylglucosamine 2-epimerase (non-hydrolyzing), at 695,370 to 696,470
_RS03690
Position (kb) 694
695
696 Strain fitness (log2 ratio) -6
-5
-4
-3
-2
-1
0
1 at 693.432 kb on - strand at 693.466 kb on - strand, within MMP_RS03680 at 693.467 kb on + strand, within MMP_RS03680 at 693.467 kb on + strand, within MMP_RS03680 at 693.467 kb on + strand, within MMP_RS03680 at 693.717 kb on - strand, within MMP_RS03680 at 693.815 kb on + strand, within MMP_RS03680 at 694.043 kb on - strand, within MMP_RS03680 at 694.048 kb on + strand, within MMP_RS03680 at 694.067 kb on + strand, within MMP_RS03680 at 694.067 kb on + strand, within MMP_RS03680 at 694.276 kb on + strand at 694.437 kb on - strand at 694.559 kb on + strand, within MMP_RS03685 at 694.597 kb on - strand, within MMP_RS03685 at 694.597 kb on - strand, within MMP_RS03685 at 694.598 kb on + strand, within MMP_RS03685 at 694.599 kb on - strand, within MMP_RS03685 at 694.606 kb on - strand, within MMP_RS03685 at 694.607 kb on + strand, within MMP_RS03685 at 694.627 kb on - strand, within MMP_RS03685 at 694.742 kb on + strand, within MMP_RS03685 at 694.819 kb on - strand, within MMP_RS03685 at 695.149 kb on - strand, within MMP_RS03685 at 695.172 kb on - strand, within MMP_RS03685 at 695.173 kb on + strand, within MMP_RS03685 at 695.289 kb on - strand at 695.311 kb on - strand at 695.311 kb on - strand at 695.311 kb on - strand at 695.312 kb on + strand at 695.316 kb on + strand at 695.316 kb on + strand at 695.327 kb on - strand at 695.327 kb on - strand at 695.327 kb on - strand at 695.328 kb on + strand at 695.328 kb on + strand at 695.328 kb on + strand at 695.330 kb on - strand at 695.331 kb on + strand at 695.331 kb on + strand at 695.331 kb on + strand at 695.334 kb on - strand at 695.335 kb on + strand at 695.372 kb on + strand at 695.623 kb on + strand at 695.623 kb on + strand at 695.625 kb on + strand at 695.786 kb on - strand at 695.790 kb on - strand at 695.791 kb on + strand at 695.795 kb on - strand at 695.795 kb on - strand at 695.795 kb on - strand at 695.978 kb on - strand at 695.978 kb on - strand at 695.983 kb on + strand at 696.189 kb on + strand at 696.189 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Mixed culture; Syntrophotalea carbinolica 1:1 starting OD to methanogen; 1,3-Propanediol_timecourse3; 20 generations remove 693,432 - +0.0 693,466 - MMP_RS03680 0.12 +0.2 693,467 + MMP_RS03680 0.12 -0.0 693,467 + MMP_RS03680 0.12 +0.1 693,467 + MMP_RS03680 0.12 -0.1 693,717 - MMP_RS03680 0.36 +0.4 693,815 + MMP_RS03680 0.46 -0.6 694,043 - MMP_RS03680 0.68 -0.5 694,048 + MMP_RS03680 0.69 -0.3 694,067 + MMP_RS03680 0.71 +0.7 694,067 + MMP_RS03680 0.71 +0.4 694,276 + -0.6 694,437 - -1.2 694,559 + MMP_RS03685 0.17 -1.9 694,597 - MMP_RS03685 0.22 -1.3 694,597 - MMP_RS03685 0.22 -1.5 694,598 + MMP_RS03685 0.22 -2.3 694,599 - MMP_RS03685 0.22 -1.7 694,606 - MMP_RS03685 0.23 -1.5 694,607 + MMP_RS03685 0.23 -2.0 694,627 - MMP_RS03685 0.25 -1.8 694,742 + MMP_RS03685 0.38 -1.6 694,819 - MMP_RS03685 0.47 -1.7 695,149 - MMP_RS03685 0.85 -2.0 695,172 - MMP_RS03685 0.88 -1.5 695,173 + MMP_RS03685 0.88 -2.4 695,289 - -2.4 695,311 - -1.6 695,311 - -1.3 695,311 - -1.6 695,312 + -0.6 695,316 + -1.1 695,316 + -1.7 695,327 - -1.8 695,327 - -1.0 695,327 - -1.8 695,328 + -1.4 695,328 + -2.0 695,328 + -2.3 695,330 - -0.9 695,331 + -2.9 695,331 + -1.8 695,331 + -1.0 695,334 - -0.3 695,335 + -0.2 695,372 + +0.4 695,623 + -3.8 695,623 + -3.6 695,625 + -3.5 695,786 - -3.1 695,790 - -4.3 695,791 + -2.4 695,795 - -3.9 695,795 - -6.7 695,795 - -1.8 695,978 - -4.6 695,978 - -3.2 695,983 + -3.8 696,189 + -3.3 696,189 + -4.3
Or see this region's nucleotide sequence