Experiment: Mixed culture; Syntrophotalea carbinolica 1:1 starting OD to methanogen; 1,3-Propanediol_timecourse3; 20 generations
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MMP_RS03410 and MMP_RS03415 are separated by 161 nucleotides MMP_RS03415 and MMP_RS03420 are separated by 13 nucleotides
MMP_RS03410: MMP_RS03410 - hypothetical protein, at 639,680 to 641,215
_RS03410
MMP_RS03415: MMP_RS03415 - acetolactate synthase large subunit, at 641,377 to 643,140
_RS03415
MMP_RS03420: MMP_RS03420 - acetolactate synthase small subunit, at 643,154 to 643,663
_RS03420
Position (kb) 641
642
643
644 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1 at 640.381 kb on + strand, within MMP_RS03410 at 640.659 kb on - strand, within MMP_RS03410 at 640.670 kb on + strand, within MMP_RS03410 at 640.673 kb on - strand, within MMP_RS03410 at 640.679 kb on + strand, within MMP_RS03410 at 640.793 kb on - strand, within MMP_RS03410 at 641.240 kb on + strand at 641.240 kb on + strand at 641.241 kb on - strand at 641.241 kb on - strand at 641.241 kb on - strand at 641.242 kb on + strand at 641.255 kb on - strand at 641.256 kb on + strand at 641.284 kb on - strand at 641.297 kb on - strand at 641.298 kb on + strand at 641.301 kb on - strand at 641.302 kb on + strand at 641.302 kb on + strand at 641.304 kb on + strand at 641.322 kb on + strand at 641.363 kb on - strand at 642.135 kb on - strand at 642.510 kb on - strand at 642.942 kb on - strand at 643.031 kb on - strand at 643.031 kb on - strand at 643.031 kb on - strand at 643.056 kb on - strand at 643.056 kb on - strand at 643.057 kb on + strand at 643.062 kb on + strand at 643.062 kb on + strand at 643.122 kb on + strand at 643.132 kb on + strand at 643.302 kb on - strand, within MMP_RS03420 at 643.327 kb on + strand, within MMP_RS03420 at 643.576 kb on + strand, within MMP_RS03420 at 643.615 kb on - strand at 643.616 kb on + strand at 643.655 kb on + strand at 643.765 kb on + strand at 643.903 kb on + strand at 643.972 kb on - strand at 643.987 kb on - strand at 643.988 kb on + strand at 644.071 kb on + strand at 644.090 kb on + strand at 644.090 kb on + strand at 644.129 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Mixed culture; Syntrophotalea carbinolica 1:1 starting OD to methanogen; 1,3-Propanediol_timecourse3; 20 generations remove 640,381 + MMP_RS03410 0.46 -1.2 640,659 - MMP_RS03410 0.64 -1.5 640,670 + MMP_RS03410 0.64 -1.5 640,673 - MMP_RS03410 0.65 -1.1 640,679 + MMP_RS03410 0.65 -0.7 640,793 - MMP_RS03410 0.72 -1.7 641,240 + -0.2 641,240 + -0.5 641,241 - +0.4 641,241 - +0.5 641,241 - +0.1 641,242 + -0.2 641,255 - +0.4 641,256 + +0.6 641,284 - +0.9 641,297 - -0.3 641,298 + -0.6 641,301 - -2.4 641,302 + -1.9 641,302 + -2.6 641,304 + -2.0 641,322 + -2.5 641,363 - -4.3 642,135 - -5.0 642,510 - -2.7 642,942 - -4.6 643,031 - -3.5 643,031 - -4.7 643,031 - -4.5 643,056 - -4.0 643,056 - -3.4 643,057 + -4.4 643,062 + -4.4 643,062 + -2.4 643,122 + +0.5 643,132 + +0.5 643,302 - MMP_RS03420 0.29 +0.3 643,327 + MMP_RS03420 0.34 -0.1 643,576 + MMP_RS03420 0.83 +0.8 643,615 - +0.2 643,616 + +0.9 643,655 + -0.2 643,765 + -0.2 643,903 + +0.3 643,972 - +0.7 643,987 - +0.1 643,988 + +0.0 644,071 + +1.5 644,090 + -0.0 644,090 + -0.3 644,129 - -0.0
Or see this region's nucleotide sequence