Experiment: Mixed culture; Syntrophotalea carbinolica 1:1 starting OD to methanogen; 1,3-Propanediol_timecourse3; 20 generations
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MMP_RS01160 and MMP_RS01165 are separated by 95 nucleotides MMP_RS01165 and MMP_RS01170 are separated by 1 nucleotides
MMP_RS01160: MMP_RS01160 - DMT family transporter, at 217,251 to 218,150
_RS01160
MMP_RS01165: MMP_RS01165 - DUF434 domain-containing protein, at 218,246 to 218,914
_RS01165
MMP_RS01170: MMP_RS01170 - glycine--tRNA ligase, at 218,916 to 220,640
_RS01170
Position (kb) 218
219 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 217.379 kb on + strand, within MMP_RS01160 at 217.391 kb on + strand, within MMP_RS01160 at 217.408 kb on - strand, within MMP_RS01160 at 217.464 kb on - strand, within MMP_RS01160 at 217.464 kb on - strand, within MMP_RS01160 at 217.504 kb on + strand, within MMP_RS01160 at 217.860 kb on - strand, within MMP_RS01160 at 217.860 kb on - strand, within MMP_RS01160 at 217.860 kb on - strand, within MMP_RS01160 at 217.861 kb on + strand, within MMP_RS01160 at 217.929 kb on - strand, within MMP_RS01160 at 217.930 kb on + strand, within MMP_RS01160 at 217.930 kb on + strand, within MMP_RS01160 at 217.930 kb on + strand, within MMP_RS01160 at 217.930 kb on + strand, within MMP_RS01160 at 218.121 kb on - strand at 218.122 kb on + strand at 218.456 kb on + strand, within MMP_RS01165 at 218.734 kb on - strand, within MMP_RS01165 at 218.764 kb on - strand, within MMP_RS01165 at 218.806 kb on - strand, within MMP_RS01165 at 218.806 kb on - strand, within MMP_RS01165 at 218.830 kb on - strand, within MMP_RS01165 at 218.858 kb on + strand at 219.809 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Mixed culture; Syntrophotalea carbinolica 1:1 starting OD to methanogen; 1,3-Propanediol_timecourse3; 20 generations remove 217,379 + MMP_RS01160 0.14 -0.1 217,391 + MMP_RS01160 0.16 -0.1 217,408 - MMP_RS01160 0.17 +0.1 217,464 - MMP_RS01160 0.24 +0.3 217,464 - MMP_RS01160 0.24 +0.8 217,504 + MMP_RS01160 0.28 +0.2 217,860 - MMP_RS01160 0.68 +0.3 217,860 - MMP_RS01160 0.68 +0.2 217,860 - MMP_RS01160 0.68 +0.7 217,861 + MMP_RS01160 0.68 +0.3 217,929 - MMP_RS01160 0.75 +0.7 217,930 + MMP_RS01160 0.75 +0.1 217,930 + MMP_RS01160 0.75 +0.0 217,930 + MMP_RS01160 0.75 +0.4 217,930 + MMP_RS01160 0.75 +0.3 218,121 - -0.3 218,122 + +0.4 218,456 + MMP_RS01165 0.31 +0.7 218,734 - MMP_RS01165 0.73 +0.6 218,764 - MMP_RS01165 0.77 +0.2 218,806 - MMP_RS01165 0.84 +0.6 218,806 - MMP_RS01165 0.84 +0.4 218,830 - MMP_RS01165 0.87 +0.2 218,858 + -0.6 219,809 + -3.1
Or see this region's nucleotide sequence