Experiment: D-Glucose-6-Phosphate 20 mM (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS05705 and HMPREF1058_RS05700 are separated by 35 nucleotides HMPREF1058_RS05700 and HMPREF1058_RS0119830 are separated by 35 nucleotides HMPREF1058_RS0119830 and HMPREF1058_RS21490 are separated by 172 nucleotides HMPREF1058_RS21490 and HMPREF1058_RS0119835 are separated by 449 nucleotides
HMPREF1058_RS05705: HMPREF1058_RS05705 - DGQHR domain-containing protein, at 97,814 to 100,150
_RS05705
HMPREF1058_RS05700: HMPREF1058_RS05700 - Dam family site-specific DNA-(adenine-N6)-methyltransferase, at 100,186 to 101,091
_RS05700
HMPREF1058_RS0119830: HMPREF1058_RS0119830 - helix-turn-helix transcriptional regulator, at 101,127 to 101,366
_RS0119830
HMPREF1058_RS21490: HMPREF1058_RS21490 - hypothetical protein, at 101,539 to 101,682
_RS21490
HMPREF1058_RS0119835: HMPREF1058_RS0119835 - type II toxin-antitoxin system HipA family toxin, at 102,132 to 103,395
_RS0119835
Position (kb) 101
102 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 100.150 kb on + strand at 100.150 kb on + strand at 100.151 kb on - strand at 100.153 kb on - strand at 100.153 kb on - strand at 100.153 kb on - strand at 100.154 kb on + strand at 100.155 kb on - strand at 100.177 kb on + strand at 100.178 kb on - strand at 100.227 kb on + strand at 100.288 kb on + strand, within HMPREF1058_RS05700 at 100.414 kb on + strand, within HMPREF1058_RS05700 at 100.414 kb on + strand, within HMPREF1058_RS05700 at 100.482 kb on + strand, within HMPREF1058_RS05700 at 100.521 kb on + strand, within HMPREF1058_RS05700 at 100.543 kb on + strand, within HMPREF1058_RS05700 at 100.572 kb on + strand, within HMPREF1058_RS05700 at 100.572 kb on + strand, within HMPREF1058_RS05700 at 100.607 kb on + strand, within HMPREF1058_RS05700 at 100.607 kb on + strand, within HMPREF1058_RS05700 at 100.641 kb on + strand, within HMPREF1058_RS05700 at 100.652 kb on + strand, within HMPREF1058_RS05700 at 100.654 kb on + strand, within HMPREF1058_RS05700 at 100.674 kb on + strand, within HMPREF1058_RS05700 at 100.677 kb on + strand, within HMPREF1058_RS05700 at 100.754 kb on + strand, within HMPREF1058_RS05700 at 100.790 kb on + strand, within HMPREF1058_RS05700 at 100.846 kb on + strand, within HMPREF1058_RS05700 at 100.853 kb on + strand, within HMPREF1058_RS05700 at 100.853 kb on + strand, within HMPREF1058_RS05700 at 100.910 kb on + strand, within HMPREF1058_RS05700 at 100.923 kb on + strand, within HMPREF1058_RS05700 at 100.962 kb on + strand, within HMPREF1058_RS05700 at 101.105 kb on - strand at 101.152 kb on - strand, within HMPREF1058_RS0119830 at 101.346 kb on - strand at 101.352 kb on - strand at 101.367 kb on + strand at 101.372 kb on - strand at 101.420 kb on + strand at 101.420 kb on + strand at 101.454 kb on + strand at 101.529 kb on - strand at 101.601 kb on + strand, within HMPREF1058_RS21490 at 101.603 kb on + strand, within HMPREF1058_RS21490 at 101.606 kb on + strand, within HMPREF1058_RS21490 at 101.622 kb on + strand, within HMPREF1058_RS21490 at 101.623 kb on - strand, within HMPREF1058_RS21490 at 101.689 kb on + strand at 101.721 kb on - strand at 101.814 kb on + strand at 101.815 kb on - strand at 101.870 kb on + strand at 101.870 kb on + strand at 101.929 kb on + strand at 101.982 kb on + strand at 102.015 kb on - strand at 102.084 kb on - strand at 102.114 kb on - strand at 102.176 kb on + strand at 102.213 kb on + strand at 102.232 kb on - strand at 102.284 kb on + strand, within HMPREF1058_RS0119835 at 102.287 kb on - strand, within HMPREF1058_RS0119835
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucose-6-Phosphate 20 mM (C) remove 100,150 + -0.6 100,150 + -0.9 100,151 - +0.2 100,153 - +0.5 100,153 - -1.2 100,153 - +1.0 100,154 + -1.3 100,155 - +1.2 100,177 + +0.4 100,178 - -0.0 100,227 + -0.0 100,288 + HMPREF1058_RS05700 0.11 -0.3 100,414 + HMPREF1058_RS05700 0.25 -1.0 100,414 + HMPREF1058_RS05700 0.25 +1.4 100,482 + HMPREF1058_RS05700 0.33 -0.0 100,521 + HMPREF1058_RS05700 0.37 -0.0 100,543 + HMPREF1058_RS05700 0.39 +0.3 100,572 + HMPREF1058_RS05700 0.43 -0.2 100,572 + HMPREF1058_RS05700 0.43 -0.0 100,607 + HMPREF1058_RS05700 0.46 +0.8 100,607 + HMPREF1058_RS05700 0.46 -0.1 100,641 + HMPREF1058_RS05700 0.50 +0.4 100,652 + HMPREF1058_RS05700 0.51 +0.1 100,654 + HMPREF1058_RS05700 0.52 -1.0 100,674 + HMPREF1058_RS05700 0.54 +0.6 100,677 + HMPREF1058_RS05700 0.54 -0.8 100,754 + HMPREF1058_RS05700 0.63 -0.2 100,790 + HMPREF1058_RS05700 0.67 -0.3 100,846 + HMPREF1058_RS05700 0.73 +0.0 100,853 + HMPREF1058_RS05700 0.74 +0.6 100,853 + HMPREF1058_RS05700 0.74 +0.4 100,910 + HMPREF1058_RS05700 0.80 -0.2 100,923 + HMPREF1058_RS05700 0.81 -0.5 100,962 + HMPREF1058_RS05700 0.86 +0.7 101,105 - -0.1 101,152 - HMPREF1058_RS0119830 0.10 -2.9 101,346 - +0.0 101,352 - -0.0 101,367 + -0.3 101,372 - -0.5 101,420 + +1.4 101,420 + +0.5 101,454 + -0.4 101,529 - -0.5 101,601 + HMPREF1058_RS21490 0.43 -0.0 101,603 + HMPREF1058_RS21490 0.44 -0.5 101,606 + HMPREF1058_RS21490 0.47 +0.2 101,622 + HMPREF1058_RS21490 0.58 -0.3 101,623 - HMPREF1058_RS21490 0.58 +2.0 101,689 + +0.1 101,721 - -0.2 101,814 + -0.1 101,815 - -0.4 101,870 + +1.2 101,870 + -1.4 101,929 + +0.0 101,982 + -0.3 102,015 - -0.3 102,084 - +0.6 102,114 - +3.0 102,176 + +0.3 102,213 + -1.2 102,232 - -0.4 102,284 + HMPREF1058_RS0119835 0.12 +0.0 102,287 - HMPREF1058_RS0119835 0.12 +1.5
Or see this region's nucleotide sequence