Strain Fitness in Rahnella sp. WP5 around EX31_RS18930

Experiment: Ammonium chloride (N); ShewMM media; shaking

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX31_RS18920 and EX31_RS18925 overlap by 4 nucleotidesEX31_RS18925 and EX31_RS18930 are separated by 30 nucleotidesEX31_RS18930 and EX31_RS18935 are separated by 58 nucleotides EX31_RS18920: EX31_RS18920 - ABC transporter permease, at 369,788 to 370,564 _RS18920 EX31_RS18925: EX31_RS18925 - ABC transporter ATP-binding protein, at 370,561 to 371,226 _RS18925 EX31_RS18930: EX31_RS18930 - capsular biosynthesis protein, at 371,257 to 372,249 _RS18930 EX31_RS18935: EX31_RS18935 - sugar phosphotransferase, at 372,308 to 373,756 _RS18935 Position (kb) 371 372 373Strain fitness (log2 ratio) -1 0 1 2at 370.350 kb on + strand, within EX31_RS18920at 370.395 kb on + strand, within EX31_RS18920at 370.419 kb on + strand, within EX31_RS18920at 370.477 kb on - strand, within EX31_RS18920at 370.509 kb on + strandat 370.527 kb on + strandat 370.531 kb on + strandat 370.531 kb on + strandat 370.593 kb on + strandat 370.615 kb on + strandat 370.654 kb on - strand, within EX31_RS18925at 370.755 kb on + strand, within EX31_RS18925at 370.755 kb on + strand, within EX31_RS18925at 370.755 kb on + strand, within EX31_RS18925at 370.755 kb on + strand, within EX31_RS18925at 370.755 kb on + strand, within EX31_RS18925at 370.761 kb on + strand, within EX31_RS18925at 370.761 kb on + strand, within EX31_RS18925at 370.761 kb on + strand, within EX31_RS18925at 370.761 kb on + strand, within EX31_RS18925at 370.762 kb on - strand, within EX31_RS18925at 370.997 kb on - strand, within EX31_RS18925at 371.000 kb on + strand, within EX31_RS18925at 371.061 kb on + strand, within EX31_RS18925at 371.195 kb on + strandat 371.241 kb on - strandat 371.483 kb on + strand, within EX31_RS18930at 371.544 kb on + strand, within EX31_RS18930at 371.611 kb on + strand, within EX31_RS18930at 371.818 kb on + strand, within EX31_RS18930at 372.018 kb on + strand, within EX31_RS18930at 372.022 kb on + strand, within EX31_RS18930at 372.087 kb on + strand, within EX31_RS18930at 372.113 kb on + strand, within EX31_RS18930at 372.215 kb on + strandat 372.257 kb on + strandat 372.357 kb on + strandat 372.431 kb on + strandat 372.460 kb on - strand, within EX31_RS18935at 372.593 kb on + strand, within EX31_RS18935at 372.601 kb on + strand, within EX31_RS18935at 372.601 kb on + strand, within EX31_RS18935at 372.601 kb on + strand, within EX31_RS18935at 372.601 kb on + strand, within EX31_RS18935at 372.685 kb on + strand, within EX31_RS18935at 372.704 kb on + strand, within EX31_RS18935at 372.812 kb on + strand, within EX31_RS18935at 372.813 kb on - strand, within EX31_RS18935at 372.989 kb on + strand, within EX31_RS18935at 372.989 kb on + strand, within EX31_RS18935at 373.010 kb on - strand, within EX31_RS18935at 373.014 kb on - strand, within EX31_RS18935at 373.018 kb on - strand, within EX31_RS18935at 373.198 kb on + strand, within EX31_RS18935

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Per-strain Table

Position Strand Gene LocusTag Fraction Ammonium chloride (N); ShewMM media; shaking
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370,350 + EX31_RS18920 0.72 +1.1
370,395 + EX31_RS18920 0.78 -1.3
370,419 + EX31_RS18920 0.81 +0.6
370,477 - EX31_RS18920 0.89 -0.4
370,509 + -0.2
370,527 + -0.1
370,531 + -0.2
370,531 + -1.5
370,593 + -1.6
370,615 + -0.7
370,654 - EX31_RS18925 0.14 -1.4
370,755 + EX31_RS18925 0.29 -0.3
370,755 + EX31_RS18925 0.29 -0.3
370,755 + EX31_RS18925 0.29 +1.1
370,755 + EX31_RS18925 0.29 +0.0
370,755 + EX31_RS18925 0.29 +0.3
370,761 + EX31_RS18925 0.30 +0.8
370,761 + EX31_RS18925 0.30 -0.2
370,761 + EX31_RS18925 0.30 -0.4
370,761 + EX31_RS18925 0.30 -0.1
370,762 - EX31_RS18925 0.30 +1.6
370,997 - EX31_RS18925 0.65 +1.1
371,000 + EX31_RS18925 0.66 +0.1
371,061 + EX31_RS18925 0.75 -0.4
371,195 + -0.9
371,241 - +1.8
371,483 + EX31_RS18930 0.23 -0.1
371,544 + EX31_RS18930 0.29 -1.4
371,611 + EX31_RS18930 0.36 +0.5
371,818 + EX31_RS18930 0.56 -0.3
372,018 + EX31_RS18930 0.77 -1.6
372,022 + EX31_RS18930 0.77 -0.1
372,087 + EX31_RS18930 0.84 +0.4
372,113 + EX31_RS18930 0.86 -1.2
372,215 + -0.0
372,257 + -0.3
372,357 + -0.7
372,431 + -1.2
372,460 - EX31_RS18935 0.10 -0.2
372,593 + EX31_RS18935 0.20 -0.4
372,601 + EX31_RS18935 0.20 +0.5
372,601 + EX31_RS18935 0.20 +0.9
372,601 + EX31_RS18935 0.20 +0.5
372,601 + EX31_RS18935 0.20 +0.4
372,685 + EX31_RS18935 0.26 -0.6
372,704 + EX31_RS18935 0.27 +0.1
372,812 + EX31_RS18935 0.35 -0.4
372,813 - EX31_RS18935 0.35 +0.6
372,989 + EX31_RS18935 0.47 +0.3
372,989 + EX31_RS18935 0.47 +1.0
373,010 - EX31_RS18935 0.48 +1.6
373,014 - EX31_RS18935 0.49 +2.1
373,018 - EX31_RS18935 0.49 +0.8
373,198 + EX31_RS18935 0.61 -0.1

Or see this region's nucleotide sequence