Strain Fitness in Rahnella sp. WP5 around EX31_RS07355

Experiment: Ammonium chloride (N); ShewMM media; shaking

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX31_RS07350 and EX31_RS07355 are separated by 12 nucleotidesEX31_RS07355 and EX31_RS07360 overlap by 4 nucleotides EX31_RS07350: EX31_RS07350 - cadmium-translocating P-type ATPase, at 272,352 to 274,256 _RS07350 EX31_RS07355: EX31_RS07355 - protease modulator HflK, at 274,269 to 275,312 _RS07355 EX31_RS07360: EX31_RS07360 - protease modulator HflC, at 275,309 to 276,343 _RS07360 Position (kb) 274 275 276Strain fitness (log2 ratio) -2 -1 0 1 2at 273.273 kb on - strand, within EX31_RS07350at 273.471 kb on - strand, within EX31_RS07350at 273.471 kb on - strand, within EX31_RS07350at 273.482 kb on - strand, within EX31_RS07350at 273.493 kb on + strand, within EX31_RS07350at 273.569 kb on + strand, within EX31_RS07350at 273.570 kb on - strand, within EX31_RS07350at 273.570 kb on - strand, within EX31_RS07350at 273.714 kb on + strand, within EX31_RS07350at 274.029 kb on - strand, within EX31_RS07350at 274.030 kb on + strand, within EX31_RS07350at 274.031 kb on - strand, within EX31_RS07350at 274.244 kb on + strandat 274.265 kb on + strandat 274.266 kb on - strandat 274.399 kb on - strand, within EX31_RS07355at 274.495 kb on - strand, within EX31_RS07355at 274.719 kb on + strand, within EX31_RS07355at 274.720 kb on - strand, within EX31_RS07355at 274.912 kb on + strand, within EX31_RS07355at 274.913 kb on - strand, within EX31_RS07355at 274.913 kb on - strand, within EX31_RS07355at 274.915 kb on + strand, within EX31_RS07355at 274.916 kb on - strand, within EX31_RS07355at 274.916 kb on - strand, within EX31_RS07355at 275.089 kb on - strand, within EX31_RS07355at 275.482 kb on + strand, within EX31_RS07360at 275.488 kb on - strand, within EX31_RS07360at 275.490 kb on - strand, within EX31_RS07360at 275.524 kb on + strand, within EX31_RS07360at 275.733 kb on + strand, within EX31_RS07360at 275.734 kb on - strand, within EX31_RS07360at 275.815 kb on + strand, within EX31_RS07360at 275.870 kb on - strand, within EX31_RS07360at 275.880 kb on - strand, within EX31_RS07360at 275.880 kb on - strand, within EX31_RS07360at 275.969 kb on - strand, within EX31_RS07360at 275.969 kb on - strand, within EX31_RS07360at 275.971 kb on - strand, within EX31_RS07360at 276.045 kb on - strand, within EX31_RS07360at 276.125 kb on - strand, within EX31_RS07360

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Per-strain Table

Position Strand Gene LocusTag Fraction Ammonium chloride (N); ShewMM media; shaking
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273,273 - EX31_RS07350 0.48 -2.1
273,471 - EX31_RS07350 0.59 +0.5
273,471 - EX31_RS07350 0.59 +0.2
273,482 - EX31_RS07350 0.59 +0.5
273,493 + EX31_RS07350 0.60 +0.5
273,569 + EX31_RS07350 0.64 -0.1
273,570 - EX31_RS07350 0.64 +0.4
273,570 - EX31_RS07350 0.64 +0.4
273,714 + EX31_RS07350 0.71 +0.8
274,029 - EX31_RS07350 0.88 +0.6
274,030 + EX31_RS07350 0.88 -0.3
274,031 - EX31_RS07350 0.88 +1.1
274,244 + +1.8
274,265 + -0.5
274,266 - +1.1
274,399 - EX31_RS07355 0.12 +0.1
274,495 - EX31_RS07355 0.22 +1.1
274,719 + EX31_RS07355 0.43 -1.3
274,720 - EX31_RS07355 0.43 -1.0
274,912 + EX31_RS07355 0.62 +2.1
274,913 - EX31_RS07355 0.62 -0.7
274,913 - EX31_RS07355 0.62 -0.0
274,915 + EX31_RS07355 0.62 +0.3
274,916 - EX31_RS07355 0.62 +0.9
274,916 - EX31_RS07355 0.62 -0.3
275,089 - EX31_RS07355 0.79 +0.8
275,482 + EX31_RS07360 0.17 -1.1
275,488 - EX31_RS07360 0.17 +1.2
275,490 - EX31_RS07360 0.17 -0.5
275,524 + EX31_RS07360 0.21 +0.4
275,733 + EX31_RS07360 0.41 +1.8
275,734 - EX31_RS07360 0.41 +1.8
275,815 + EX31_RS07360 0.49 -1.2
275,870 - EX31_RS07360 0.54 -0.7
275,880 - EX31_RS07360 0.55 +1.0
275,880 - EX31_RS07360 0.55 +0.6
275,969 - EX31_RS07360 0.64 +1.0
275,969 - EX31_RS07360 0.64 +1.1
275,971 - EX31_RS07360 0.64 -1.9
276,045 - EX31_RS07360 0.71 +2.1
276,125 - EX31_RS07360 0.79 -0.6

Or see this region's nucleotide sequence