Experiment: L-Phenylalanine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_02942 and CCNA_03981 are separated by 205 nucleotides CCNA_03981 and CCNA_03982 are separated by 59 nucleotides CCNA_03982 and CCNA_02944 are separated by 107 nucleotides
CCNA_02942: CCNA_02942 - nucleoside-diphosphate-sugar epimerase, at 3,102,130 to 3,103,299
_02942
CCNA_03981: CCNA_03981 - hypothetical protein, at 3,103,505 to 3,103,669
_03981
CCNA_03982: CCNA_03982 - hypothetical protein, at 3,103,729 to 3,103,842
_03982
CCNA_02944: CCNA_02944 - hypothetical protein, at 3,103,950 to 3,104,690
_02944
Position (kb)
3103
3104 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 3103.114 kb on + strand, within CCNA_02942 at 3103.114 kb on + strand, within CCNA_02942 at 3103.119 kb on + strand, within CCNA_02942 at 3103.124 kb on + strand, within CCNA_02942 at 3103.127 kb on - strand, within CCNA_02942 at 3103.166 kb on - strand, within CCNA_02942 at 3103.182 kb on + strand, within CCNA_02942 at 3103.190 kb on - strand at 3103.206 kb on + strand at 3103.226 kb on - strand at 3103.226 kb on - strand at 3103.264 kb on - strand at 3103.311 kb on + strand at 3103.338 kb on - strand at 3103.340 kb on + strand at 3103.340 kb on + strand at 3103.340 kb on + strand at 3103.341 kb on + strand at 3103.341 kb on + strand at 3103.341 kb on + strand at 3103.346 kb on + strand at 3103.388 kb on + strand at 3103.398 kb on + strand at 3103.406 kb on - strand at 3103.440 kb on - strand at 3103.554 kb on + strand, within CCNA_03981 at 3103.554 kb on + strand, within CCNA_03981 at 3103.554 kb on + strand, within CCNA_03981 at 3103.575 kb on + strand, within CCNA_03981 at 3103.575 kb on + strand, within CCNA_03981 at 3103.583 kb on - strand, within CCNA_03981 at 3103.602 kb on + strand, within CCNA_03981 at 3103.602 kb on + strand, within CCNA_03981 at 3103.622 kb on - strand, within CCNA_03981 at 3103.624 kb on + strand, within CCNA_03981 at 3103.646 kb on + strand, within CCNA_03981 at 3103.691 kb on + strand at 3103.696 kb on + strand at 3103.698 kb on + strand at 3103.722 kb on + strand at 3103.730 kb on - strand at 3103.739 kb on - strand at 3103.750 kb on + strand, within CCNA_03982 at 3103.750 kb on + strand, within CCNA_03982 at 3103.879 kb on + strand at 3103.896 kb on + strand at 3103.896 kb on + strand at 3103.898 kb on + strand at 3103.960 kb on + strand at 3103.963 kb on - strand at 3103.968 kb on - strand at 3104.010 kb on + strand at 3104.010 kb on + strand at 3104.010 kb on + strand at 3104.010 kb on + strand at 3104.010 kb on + strand at 3104.010 kb on + strand at 3104.010 kb on + strand at 3104.010 kb on + strand at 3104.015 kb on + strand at 3104.018 kb on - strand at 3104.018 kb on - strand at 3104.018 kb on - strand at 3104.018 kb on - strand at 3104.018 kb on - strand at 3104.018 kb on - strand at 3104.018 kb on - strand at 3104.018 kb on - strand at 3104.027 kb on + strand, within CCNA_02944 at 3104.027 kb on + strand, within CCNA_02944 at 3104.035 kb on - strand, within CCNA_02944 at 3104.079 kb on + strand, within CCNA_02944 at 3104.126 kb on + strand, within CCNA_02944 at 3104.129 kb on - strand, within CCNA_02944 at 3104.134 kb on - strand, within CCNA_02944 at 3104.146 kb on - strand, within CCNA_02944 at 3104.189 kb on - strand, within CCNA_02944 at 3104.251 kb on + strand, within CCNA_02944 at 3104.319 kb on + strand, within CCNA_02944 at 3104.479 kb on - strand, within CCNA_02944 at 3104.485 kb on + strand, within CCNA_02944 at 3104.568 kb on + strand, within CCNA_02944 at 3104.575 kb on + strand, within CCNA_02944 at 3104.589 kb on + strand, within CCNA_02944 at 3104.630 kb on - strand at 3104.656 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Phenylalanine (N) remove 3,103,114 + CCNA_02942 0.84 +0.9 3,103,114 + CCNA_02942 0.84 +1.0 3,103,119 + CCNA_02942 0.85 +1.3 3,103,124 + CCNA_02942 0.85 +1.0 3,103,127 - CCNA_02942 0.85 -0.2 3,103,166 - CCNA_02942 0.89 +0.1 3,103,182 + CCNA_02942 0.90 +1.4 3,103,190 - +0.2 3,103,206 + +1.2 3,103,226 - +1.1 3,103,226 - -0.4 3,103,264 - +1.2 3,103,311 + +2.8 3,103,338 - +2.1 3,103,340 + -0.1 3,103,340 + +1.5 3,103,340 + +0.7 3,103,341 + +1.1 3,103,341 + +2.6 3,103,341 + +1.4 3,103,346 + -1.6 3,103,388 + -0.3 3,103,398 + +0.6 3,103,406 - +0.7 3,103,440 - +0.2 3,103,554 + CCNA_03981 0.30 +0.7 3,103,554 + CCNA_03981 0.30 -0.8 3,103,554 + CCNA_03981 0.30 -0.6 3,103,575 + CCNA_03981 0.42 -1.7 3,103,575 + CCNA_03981 0.42 -0.7 3,103,583 - CCNA_03981 0.47 -0.9 3,103,602 + CCNA_03981 0.59 +0.3 3,103,602 + CCNA_03981 0.59 -0.2 3,103,622 - CCNA_03981 0.71 +0.3 3,103,624 + CCNA_03981 0.72 -0.9 3,103,646 + CCNA_03981 0.85 +0.5 3,103,691 + -0.6 3,103,696 + -0.3 3,103,698 + +1.1 3,103,722 + +0.1 3,103,730 - -0.9 3,103,739 - -0.5 3,103,750 + CCNA_03982 0.18 -1.4 3,103,750 + CCNA_03982 0.18 -0.7 3,103,879 + -0.8 3,103,896 + +1.1 3,103,896 + +0.2 3,103,898 + +0.9 3,103,960 + +0.5 3,103,963 - +0.6 3,103,968 - -1.3 3,104,010 + +0.6 3,104,010 + +0.2 3,104,010 + +1.6 3,104,010 + -1.0 3,104,010 + +1.6 3,104,010 + -1.7 3,104,010 + -0.0 3,104,010 + -0.1 3,104,015 + +0.2 3,104,018 - -1.1 3,104,018 - -0.1 3,104,018 - +0.8 3,104,018 - -1.8 3,104,018 - +1.3 3,104,018 - -2.6 3,104,018 - -1.5 3,104,018 - -0.3 3,104,027 + CCNA_02944 0.10 +0.1 3,104,027 + CCNA_02944 0.10 -0.9 3,104,035 - CCNA_02944 0.11 -2.6 3,104,079 + CCNA_02944 0.17 -0.1 3,104,126 + CCNA_02944 0.24 -0.2 3,104,129 - CCNA_02944 0.24 -2.1 3,104,134 - CCNA_02944 0.25 +0.0 3,104,146 - CCNA_02944 0.26 -1.1 3,104,189 - CCNA_02944 0.32 +0.4 3,104,251 + CCNA_02944 0.41 +0.0 3,104,319 + CCNA_02944 0.50 -0.0 3,104,479 - CCNA_02944 0.71 +2.2 3,104,485 + CCNA_02944 0.72 +1.0 3,104,568 + CCNA_02944 0.83 +2.0 3,104,575 + CCNA_02944 0.84 +1.6 3,104,589 + CCNA_02944 0.86 -0.9 3,104,630 - -1.5 3,104,656 + +1.4
Or see this region's nucleotide sequence