Experiment: L-Phenylalanine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_03768 and CCNA_03769 are separated by 341 nucleotides CCNA_03769 and CCNA_03770 are separated by 131 nucleotides
CCNA_03768: CCNA_03768 - signal recognition particle GTPase, SRP, at 3,935,365 to 3,936,891
_03768
CCNA_03769: CCNA_03769 - hypothetical protein, at 3,937,233 to 3,937,739
_03769
CCNA_03770: CCNA_03770 - malate dehydrogenase, at 3,937,871 to 3,938,833
_03770
Position (kb)
3937
3938 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 3937.075 kb on + strand at 3937.083 kb on - strand at 3937.083 kb on - strand at 3937.090 kb on + strand at 3937.099 kb on - strand at 3937.139 kb on + strand at 3937.139 kb on + strand at 3937.153 kb on + strand at 3937.153 kb on + strand at 3937.161 kb on - strand at 3937.188 kb on + strand at 3937.196 kb on - strand at 3937.196 kb on - strand at 3937.231 kb on + strand at 3937.238 kb on - strand at 3937.239 kb on - strand at 3937.239 kb on - strand at 3937.265 kb on + strand at 3937.289 kb on - strand, within CCNA_03769 at 3937.310 kb on - strand, within CCNA_03769 at 3937.314 kb on + strand, within CCNA_03769 at 3937.337 kb on - strand, within CCNA_03769 at 3937.337 kb on - strand, within CCNA_03769 at 3937.347 kb on + strand, within CCNA_03769 at 3937.354 kb on + strand, within CCNA_03769 at 3937.354 kb on + strand, within CCNA_03769 at 3937.362 kb on - strand, within CCNA_03769 at 3937.362 kb on - strand, within CCNA_03769 at 3937.362 kb on - strand, within CCNA_03769 at 3937.364 kb on + strand, within CCNA_03769 at 3937.382 kb on + strand, within CCNA_03769 at 3937.403 kb on + strand, within CCNA_03769 at 3937.403 kb on + strand, within CCNA_03769 at 3937.435 kb on - strand, within CCNA_03769 at 3937.436 kb on - strand, within CCNA_03769 at 3937.442 kb on - strand, within CCNA_03769 at 3937.449 kb on - strand, within CCNA_03769 at 3937.492 kb on - strand, within CCNA_03769 at 3937.514 kb on + strand, within CCNA_03769 at 3937.524 kb on + strand, within CCNA_03769 at 3937.529 kb on + strand, within CCNA_03769 at 3937.537 kb on + strand, within CCNA_03769 at 3937.545 kb on - strand, within CCNA_03769 at 3937.597 kb on + strand, within CCNA_03769 at 3937.605 kb on - strand, within CCNA_03769 at 3937.605 kb on - strand, within CCNA_03769 at 3937.605 kb on - strand, within CCNA_03769 at 3937.605 kb on - strand, within CCNA_03769 at 3937.605 kb on - strand, within CCNA_03769 at 3937.617 kb on - strand, within CCNA_03769 at 3937.617 kb on - strand, within CCNA_03769 at 3937.642 kb on + strand, within CCNA_03769 at 3937.650 kb on - strand, within CCNA_03769 at 3937.650 kb on - strand, within CCNA_03769 at 3937.650 kb on - strand, within CCNA_03769 at 3937.660 kb on + strand, within CCNA_03769 at 3937.668 kb on - strand, within CCNA_03769 at 3937.668 kb on - strand, within CCNA_03769 at 3937.675 kb on + strand, within CCNA_03769 at 3937.677 kb on + strand, within CCNA_03769 at 3937.677 kb on + strand, within CCNA_03769 at 3937.677 kb on + strand, within CCNA_03769 at 3937.677 kb on + strand, within CCNA_03769 at 3937.685 kb on - strand, within CCNA_03769 at 3937.685 kb on - strand, within CCNA_03769 at 3937.716 kb on + strand at 3937.730 kb on - strand at 3937.734 kb on + strand at 3937.742 kb on - strand at 3937.774 kb on + strand at 3937.775 kb on - strand at 3937.804 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Phenylalanine (N) remove 3,937,075 + +0.6 3,937,083 - +0.8 3,937,083 - +0.0 3,937,090 + -1.0 3,937,099 - -0.1 3,937,139 + -0.2 3,937,139 + -0.4 3,937,153 + +0.4 3,937,153 + +2.0 3,937,161 - +0.9 3,937,188 + +1.1 3,937,196 - +0.2 3,937,196 - +1.2 3,937,231 + -2.1 3,937,238 - +0.3 3,937,239 - +2.0 3,937,239 - +1.0 3,937,265 + +0.4 3,937,289 - CCNA_03769 0.11 -0.4 3,937,310 - CCNA_03769 0.15 +0.3 3,937,314 + CCNA_03769 0.16 -0.7 3,937,337 - CCNA_03769 0.21 +0.2 3,937,337 - CCNA_03769 0.21 -0.2 3,937,347 + CCNA_03769 0.22 -1.5 3,937,354 + CCNA_03769 0.24 -1.1 3,937,354 + CCNA_03769 0.24 -1.0 3,937,362 - CCNA_03769 0.25 +0.0 3,937,362 - CCNA_03769 0.25 -2.8 3,937,362 - CCNA_03769 0.25 -1.0 3,937,364 + CCNA_03769 0.26 +1.8 3,937,382 + CCNA_03769 0.29 +1.2 3,937,403 + CCNA_03769 0.34 -1.9 3,937,403 + CCNA_03769 0.34 -0.2 3,937,435 - CCNA_03769 0.40 -0.6 3,937,436 - CCNA_03769 0.40 +2.5 3,937,442 - CCNA_03769 0.41 +0.8 3,937,449 - CCNA_03769 0.43 +0.3 3,937,492 - CCNA_03769 0.51 -0.3 3,937,514 + CCNA_03769 0.55 -1.0 3,937,524 + CCNA_03769 0.57 +1.7 3,937,529 + CCNA_03769 0.58 +0.3 3,937,537 + CCNA_03769 0.60 +0.4 3,937,545 - CCNA_03769 0.62 +0.8 3,937,597 + CCNA_03769 0.72 +1.6 3,937,605 - CCNA_03769 0.73 +0.6 3,937,605 - CCNA_03769 0.73 +0.1 3,937,605 - CCNA_03769 0.73 -0.6 3,937,605 - CCNA_03769 0.73 +1.3 3,937,605 - CCNA_03769 0.73 -1.5 3,937,617 - CCNA_03769 0.76 +0.4 3,937,617 - CCNA_03769 0.76 +0.9 3,937,642 + CCNA_03769 0.81 +0.3 3,937,650 - CCNA_03769 0.82 -0.3 3,937,650 - CCNA_03769 0.82 +1.9 3,937,650 - CCNA_03769 0.82 +1.0 3,937,660 + CCNA_03769 0.84 +0.3 3,937,668 - CCNA_03769 0.86 -0.6 3,937,668 - CCNA_03769 0.86 +0.4 3,937,675 + CCNA_03769 0.87 +1.6 3,937,677 + CCNA_03769 0.88 -0.0 3,937,677 + CCNA_03769 0.88 -1.9 3,937,677 + CCNA_03769 0.88 +2.0 3,937,677 + CCNA_03769 0.88 +0.2 3,937,685 - CCNA_03769 0.89 -0.8 3,937,685 - CCNA_03769 0.89 -0.1 3,937,716 + +0.2 3,937,730 - +0.7 3,937,734 + +0.3 3,937,742 - -0.4 3,937,774 + +0.2 3,937,775 - -0.4 3,937,804 - +0.9
Or see this region's nucleotide sequence