Experiment: L-Phenylalanine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_03513 and CCNA_03514 are separated by 69 nucleotides CCNA_03514 and CCNA_03515 overlap by 23 nucleotides CCNA_03515 and CCNA_03516 overlap by 4 nucleotides
CCNA_03513: CCNA_03513 - cytochrome c oxidase subunit III coxC, at 3,670,974 to 3,671,846
_03513
CCNA_03514: CCNA_03514 - cytochrome c oxidase assembly protein ctaG, at 3,671,916 to 3,672,566
_03514
CCNA_03515: CCNA_03515 - hypothetical protein, at 3,672,544 to 3,672,705
_03515
CCNA_03516: CCNA_03516 - protoheme IX farnesyltransferase coxE, at 3,672,702 to 3,673,721
_03516
Position (kb)
3671
3672
3673 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3
4 at 3670.940 kb on + strand at 3670.958 kb on + strand at 3670.974 kb on - strand at 3671.133 kb on - strand, within CCNA_03513 at 3671.239 kb on + strand, within CCNA_03513 at 3671.345 kb on - strand, within CCNA_03513 at 3671.403 kb on - strand, within CCNA_03513 at 3671.403 kb on - strand, within CCNA_03513 at 3671.403 kb on - strand, within CCNA_03513 at 3671.403 kb on - strand, within CCNA_03513 at 3671.426 kb on - strand, within CCNA_03513 at 3671.435 kb on - strand, within CCNA_03513 at 3671.472 kb on - strand, within CCNA_03513 at 3671.489 kb on - strand, within CCNA_03513 at 3671.508 kb on - strand, within CCNA_03513 at 3671.535 kb on - strand, within CCNA_03513 at 3671.535 kb on - strand, within CCNA_03513 at 3671.563 kb on - strand, within CCNA_03513 at 3671.589 kb on - strand, within CCNA_03513 at 3671.673 kb on - strand, within CCNA_03513 at 3671.673 kb on - strand, within CCNA_03513 at 3671.739 kb on - strand, within CCNA_03513 at 3671.743 kb on + strand, within CCNA_03513 at 3671.858 kb on + strand at 3671.866 kb on - strand at 3671.866 kb on - strand at 3671.867 kb on - strand at 3671.902 kb on - strand at 3671.908 kb on + strand at 3671.915 kb on + strand at 3671.915 kb on + strand at 3671.923 kb on + strand at 3671.923 kb on + strand at 3671.924 kb on - strand at 3671.924 kb on - strand at 3671.933 kb on - strand at 3671.963 kb on + strand at 3672.060 kb on - strand, within CCNA_03514 at 3672.087 kb on + strand, within CCNA_03514 at 3672.121 kb on - strand, within CCNA_03514 at 3672.130 kb on - strand, within CCNA_03514 at 3672.177 kb on - strand, within CCNA_03514 at 3672.190 kb on + strand, within CCNA_03514 at 3672.190 kb on + strand, within CCNA_03514 at 3672.192 kb on + strand, within CCNA_03514 at 3672.198 kb on - strand, within CCNA_03514 at 3672.198 kb on - strand, within CCNA_03514 at 3672.198 kb on - strand, within CCNA_03514 at 3672.198 kb on - strand, within CCNA_03514 at 3672.198 kb on - strand, within CCNA_03514 at 3672.198 kb on - strand, within CCNA_03514 at 3672.198 kb on - strand, within CCNA_03514 at 3672.198 kb on - strand, within CCNA_03514 at 3672.198 kb on - strand, within CCNA_03514 at 3672.239 kb on + strand, within CCNA_03514 at 3672.239 kb on + strand, within CCNA_03514 at 3672.247 kb on - strand, within CCNA_03514 at 3672.249 kb on + strand, within CCNA_03514 at 3672.257 kb on - strand, within CCNA_03514 at 3672.257 kb on - strand, within CCNA_03514 at 3672.304 kb on + strand, within CCNA_03514 at 3672.362 kb on - strand, within CCNA_03514 at 3672.366 kb on + strand, within CCNA_03514 at 3672.374 kb on - strand, within CCNA_03514 at 3672.374 kb on - strand, within CCNA_03514 at 3672.388 kb on - strand, within CCNA_03514 at 3672.413 kb on - strand, within CCNA_03514 at 3672.440 kb on - strand, within CCNA_03514 at 3672.444 kb on + strand, within CCNA_03514 at 3672.583 kb on - strand, within CCNA_03515 at 3672.621 kb on + strand, within CCNA_03515 at 3672.629 kb on - strand, within CCNA_03515 at 3672.629 kb on - strand, within CCNA_03515 at 3672.703 kb on - strand at 3672.747 kb on - strand at 3672.816 kb on - strand, within CCNA_03516 at 3672.849 kb on - strand, within CCNA_03516 at 3672.977 kb on - strand, within CCNA_03516 at 3673.018 kb on - strand, within CCNA_03516 at 3673.126 kb on - strand, within CCNA_03516 at 3673.128 kb on - strand, within CCNA_03516 at 3673.190 kb on - strand, within CCNA_03516 at 3673.491 kb on - strand, within CCNA_03516 at 3673.514 kb on + strand, within CCNA_03516
Per-strain Table
Position Strand Gene LocusTag Fraction L-Phenylalanine (N) remove 3,670,940 + +0.2 3,670,958 + -1.9 3,670,974 - +1.0 3,671,133 - CCNA_03513 0.18 +1.5 3,671,239 + CCNA_03513 0.30 -3.0 3,671,345 - CCNA_03513 0.42 +0.1 3,671,403 - CCNA_03513 0.49 +0.9 3,671,403 - CCNA_03513 0.49 +2.0 3,671,403 - CCNA_03513 0.49 +1.2 3,671,403 - CCNA_03513 0.49 +0.3 3,671,426 - CCNA_03513 0.52 +1.8 3,671,435 - CCNA_03513 0.53 +0.5 3,671,472 - CCNA_03513 0.57 +0.6 3,671,489 - CCNA_03513 0.59 -0.2 3,671,508 - CCNA_03513 0.61 +2.1 3,671,535 - CCNA_03513 0.64 +0.8 3,671,535 - CCNA_03513 0.64 +1.0 3,671,563 - CCNA_03513 0.67 +1.0 3,671,589 - CCNA_03513 0.70 +0.9 3,671,673 - CCNA_03513 0.80 +0.5 3,671,673 - CCNA_03513 0.80 +1.1 3,671,739 - CCNA_03513 0.88 +0.1 3,671,743 + CCNA_03513 0.88 -1.4 3,671,858 + +1.1 3,671,866 - +1.5 3,671,866 - +1.2 3,671,867 - +2.1 3,671,902 - +4.0 3,671,908 + -0.2 3,671,915 + -1.7 3,671,915 + -0.4 3,671,923 + -0.3 3,671,923 + -0.2 3,671,924 - +0.8 3,671,924 - +2.0 3,671,933 - +1.3 3,671,963 + +0.3 3,672,060 - CCNA_03514 0.22 +1.7 3,672,087 + CCNA_03514 0.26 -0.7 3,672,121 - CCNA_03514 0.31 +1.6 3,672,130 - CCNA_03514 0.33 +3.4 3,672,177 - CCNA_03514 0.40 +2.0 3,672,190 + CCNA_03514 0.42 +0.9 3,672,190 + CCNA_03514 0.42 +0.2 3,672,192 + CCNA_03514 0.42 -2.2 3,672,198 - CCNA_03514 0.43 +0.2 3,672,198 - CCNA_03514 0.43 +4.6 3,672,198 - CCNA_03514 0.43 +1.8 3,672,198 - CCNA_03514 0.43 +1.7 3,672,198 - CCNA_03514 0.43 +1.0 3,672,198 - CCNA_03514 0.43 +0.9 3,672,198 - CCNA_03514 0.43 +1.6 3,672,198 - CCNA_03514 0.43 +1.6 3,672,198 - CCNA_03514 0.43 +1.5 3,672,239 + CCNA_03514 0.50 -2.8 3,672,239 + CCNA_03514 0.50 +0.2 3,672,247 - CCNA_03514 0.51 +2.0 3,672,249 + CCNA_03514 0.51 +0.2 3,672,257 - CCNA_03514 0.52 +2.4 3,672,257 - CCNA_03514 0.52 +0.6 3,672,304 + CCNA_03514 0.60 -0.5 3,672,362 - CCNA_03514 0.69 +3.9 3,672,366 + CCNA_03514 0.69 +1.2 3,672,374 - CCNA_03514 0.70 +1.7 3,672,374 - CCNA_03514 0.70 +1.2 3,672,388 - CCNA_03514 0.73 +1.0 3,672,413 - CCNA_03514 0.76 +1.2 3,672,440 - CCNA_03514 0.80 +1.3 3,672,444 + CCNA_03514 0.81 -2.0 3,672,583 - CCNA_03515 0.24 +1.0 3,672,621 + CCNA_03515 0.48 +1.2 3,672,629 - CCNA_03515 0.52 +1.5 3,672,629 - CCNA_03515 0.52 +0.1 3,672,703 - +1.0 3,672,747 - +1.5 3,672,816 - CCNA_03516 0.11 +1.4 3,672,849 - CCNA_03516 0.14 +0.6 3,672,977 - CCNA_03516 0.27 +0.0 3,673,018 - CCNA_03516 0.31 +1.1 3,673,126 - CCNA_03516 0.42 +0.9 3,673,128 - CCNA_03516 0.42 +0.0 3,673,190 - CCNA_03516 0.48 +2.6 3,673,491 - CCNA_03516 0.77 +0.4 3,673,514 + CCNA_03516 0.80 +2.0
Or see this region's nucleotide sequence