Strain Fitness in Caulobacter crescentus NA1000 around CCNA_03514

Experiment: L-Phenylalanine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_03513 and CCNA_03514 are separated by 69 nucleotidesCCNA_03514 and CCNA_03515 overlap by 23 nucleotidesCCNA_03515 and CCNA_03516 overlap by 4 nucleotides CCNA_03513: CCNA_03513 - cytochrome c oxidase subunit III coxC, at 3,670,974 to 3,671,846 _03513 CCNA_03514: CCNA_03514 - cytochrome c oxidase assembly protein ctaG, at 3,671,916 to 3,672,566 _03514 CCNA_03515: CCNA_03515 - hypothetical protein, at 3,672,544 to 3,672,705 _03515 CCNA_03516: CCNA_03516 - protoheme IX farnesyltransferase coxE, at 3,672,702 to 3,673,721 _03516 Position (kb) 3671 3672 3673Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 3670.940 kb on + strandat 3670.958 kb on + strandat 3670.974 kb on - strandat 3671.133 kb on - strand, within CCNA_03513at 3671.239 kb on + strand, within CCNA_03513at 3671.345 kb on - strand, within CCNA_03513at 3671.403 kb on - strand, within CCNA_03513at 3671.403 kb on - strand, within CCNA_03513at 3671.403 kb on - strand, within CCNA_03513at 3671.403 kb on - strand, within CCNA_03513at 3671.426 kb on - strand, within CCNA_03513at 3671.435 kb on - strand, within CCNA_03513at 3671.472 kb on - strand, within CCNA_03513at 3671.489 kb on - strand, within CCNA_03513at 3671.508 kb on - strand, within CCNA_03513at 3671.535 kb on - strand, within CCNA_03513at 3671.535 kb on - strand, within CCNA_03513at 3671.563 kb on - strand, within CCNA_03513at 3671.589 kb on - strand, within CCNA_03513at 3671.673 kb on - strand, within CCNA_03513at 3671.673 kb on - strand, within CCNA_03513at 3671.739 kb on - strand, within CCNA_03513at 3671.743 kb on + strand, within CCNA_03513at 3671.858 kb on + strandat 3671.866 kb on - strandat 3671.866 kb on - strandat 3671.867 kb on - strandat 3671.902 kb on - strandat 3671.908 kb on + strandat 3671.915 kb on + strandat 3671.915 kb on + strandat 3671.923 kb on + strandat 3671.923 kb on + strandat 3671.924 kb on - strandat 3671.924 kb on - strandat 3671.933 kb on - strandat 3671.963 kb on + strandat 3672.060 kb on - strand, within CCNA_03514at 3672.087 kb on + strand, within CCNA_03514at 3672.121 kb on - strand, within CCNA_03514at 3672.130 kb on - strand, within CCNA_03514at 3672.177 kb on - strand, within CCNA_03514at 3672.190 kb on + strand, within CCNA_03514at 3672.190 kb on + strand, within CCNA_03514at 3672.192 kb on + strand, within CCNA_03514at 3672.198 kb on - strand, within CCNA_03514at 3672.198 kb on - strand, within CCNA_03514at 3672.198 kb on - strand, within CCNA_03514at 3672.198 kb on - strand, within CCNA_03514at 3672.198 kb on - strand, within CCNA_03514at 3672.198 kb on - strand, within CCNA_03514at 3672.198 kb on - strand, within CCNA_03514at 3672.198 kb on - strand, within CCNA_03514at 3672.198 kb on - strand, within CCNA_03514at 3672.239 kb on + strand, within CCNA_03514at 3672.239 kb on + strand, within CCNA_03514at 3672.247 kb on - strand, within CCNA_03514at 3672.249 kb on + strand, within CCNA_03514at 3672.257 kb on - strand, within CCNA_03514at 3672.257 kb on - strand, within CCNA_03514at 3672.304 kb on + strand, within CCNA_03514at 3672.362 kb on - strand, within CCNA_03514at 3672.366 kb on + strand, within CCNA_03514at 3672.374 kb on - strand, within CCNA_03514at 3672.374 kb on - strand, within CCNA_03514at 3672.388 kb on - strand, within CCNA_03514at 3672.413 kb on - strand, within CCNA_03514at 3672.440 kb on - strand, within CCNA_03514at 3672.444 kb on + strand, within CCNA_03514at 3672.583 kb on - strand, within CCNA_03515at 3672.621 kb on + strand, within CCNA_03515at 3672.629 kb on - strand, within CCNA_03515at 3672.629 kb on - strand, within CCNA_03515at 3672.703 kb on - strandat 3672.747 kb on - strandat 3672.816 kb on - strand, within CCNA_03516at 3672.849 kb on - strand, within CCNA_03516at 3672.977 kb on - strand, within CCNA_03516at 3673.018 kb on - strand, within CCNA_03516at 3673.126 kb on - strand, within CCNA_03516at 3673.128 kb on - strand, within CCNA_03516at 3673.190 kb on - strand, within CCNA_03516at 3673.491 kb on - strand, within CCNA_03516at 3673.514 kb on + strand, within CCNA_03516

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Phenylalanine (N)
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3,670,940 + +0.2
3,670,958 + -1.9
3,670,974 - +1.0
3,671,133 - CCNA_03513 0.18 +1.5
3,671,239 + CCNA_03513 0.30 -3.0
3,671,345 - CCNA_03513 0.42 +0.1
3,671,403 - CCNA_03513 0.49 +0.9
3,671,403 - CCNA_03513 0.49 +2.0
3,671,403 - CCNA_03513 0.49 +1.2
3,671,403 - CCNA_03513 0.49 +0.3
3,671,426 - CCNA_03513 0.52 +1.8
3,671,435 - CCNA_03513 0.53 +0.5
3,671,472 - CCNA_03513 0.57 +0.6
3,671,489 - CCNA_03513 0.59 -0.2
3,671,508 - CCNA_03513 0.61 +2.1
3,671,535 - CCNA_03513 0.64 +0.8
3,671,535 - CCNA_03513 0.64 +1.0
3,671,563 - CCNA_03513 0.67 +1.0
3,671,589 - CCNA_03513 0.70 +0.9
3,671,673 - CCNA_03513 0.80 +0.5
3,671,673 - CCNA_03513 0.80 +1.1
3,671,739 - CCNA_03513 0.88 +0.1
3,671,743 + CCNA_03513 0.88 -1.4
3,671,858 + +1.1
3,671,866 - +1.5
3,671,866 - +1.2
3,671,867 - +2.1
3,671,902 - +4.0
3,671,908 + -0.2
3,671,915 + -1.7
3,671,915 + -0.4
3,671,923 + -0.3
3,671,923 + -0.2
3,671,924 - +0.8
3,671,924 - +2.0
3,671,933 - +1.3
3,671,963 + +0.3
3,672,060 - CCNA_03514 0.22 +1.7
3,672,087 + CCNA_03514 0.26 -0.7
3,672,121 - CCNA_03514 0.31 +1.6
3,672,130 - CCNA_03514 0.33 +3.4
3,672,177 - CCNA_03514 0.40 +2.0
3,672,190 + CCNA_03514 0.42 +0.9
3,672,190 + CCNA_03514 0.42 +0.2
3,672,192 + CCNA_03514 0.42 -2.2
3,672,198 - CCNA_03514 0.43 +0.2
3,672,198 - CCNA_03514 0.43 +4.6
3,672,198 - CCNA_03514 0.43 +1.8
3,672,198 - CCNA_03514 0.43 +1.7
3,672,198 - CCNA_03514 0.43 +1.0
3,672,198 - CCNA_03514 0.43 +0.9
3,672,198 - CCNA_03514 0.43 +1.6
3,672,198 - CCNA_03514 0.43 +1.6
3,672,198 - CCNA_03514 0.43 +1.5
3,672,239 + CCNA_03514 0.50 -2.8
3,672,239 + CCNA_03514 0.50 +0.2
3,672,247 - CCNA_03514 0.51 +2.0
3,672,249 + CCNA_03514 0.51 +0.2
3,672,257 - CCNA_03514 0.52 +2.4
3,672,257 - CCNA_03514 0.52 +0.6
3,672,304 + CCNA_03514 0.60 -0.5
3,672,362 - CCNA_03514 0.69 +3.9
3,672,366 + CCNA_03514 0.69 +1.2
3,672,374 - CCNA_03514 0.70 +1.7
3,672,374 - CCNA_03514 0.70 +1.2
3,672,388 - CCNA_03514 0.73 +1.0
3,672,413 - CCNA_03514 0.76 +1.2
3,672,440 - CCNA_03514 0.80 +1.3
3,672,444 + CCNA_03514 0.81 -2.0
3,672,583 - CCNA_03515 0.24 +1.0
3,672,621 + CCNA_03515 0.48 +1.2
3,672,629 - CCNA_03515 0.52 +1.5
3,672,629 - CCNA_03515 0.52 +0.1
3,672,703 - +1.0
3,672,747 - +1.5
3,672,816 - CCNA_03516 0.11 +1.4
3,672,849 - CCNA_03516 0.14 +0.6
3,672,977 - CCNA_03516 0.27 +0.0
3,673,018 - CCNA_03516 0.31 +1.1
3,673,126 - CCNA_03516 0.42 +0.9
3,673,128 - CCNA_03516 0.42 +0.0
3,673,190 - CCNA_03516 0.48 +2.6
3,673,491 - CCNA_03516 0.77 +0.4
3,673,514 + CCNA_03516 0.80 +2.0

Or see this region's nucleotide sequence