Experiment: L-Phenylalanine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_03507 and CCNA_03508 are separated by 34 nucleotides CCNA_03508 and CCNA_03509 are separated by 17 nucleotides
CCNA_03507: CCNA_03507 - GGDEF/EAL phosphodiesterase PdeA, at 3,664,746 to 3,666,413
_03507
CCNA_03508: CCNA_03508 - ribosomal-protein-S5-alanine acetyltransferase, at 3,666,448 to 3,667,026
_03508
CCNA_03509: CCNA_03509 - zinc protease, at 3,667,044 to 3,668,315
_03509
Position (kb)
3666
3667
3668 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3
4
5 at 3665.494 kb on - strand, within CCNA_03507 at 3665.504 kb on - strand, within CCNA_03507 at 3665.526 kb on + strand, within CCNA_03507 at 3665.539 kb on - strand, within CCNA_03507 at 3665.633 kb on + strand, within CCNA_03507 at 3665.643 kb on + strand, within CCNA_03507 at 3665.651 kb on - strand, within CCNA_03507 at 3665.685 kb on + strand, within CCNA_03507 at 3665.720 kb on + strand, within CCNA_03507 at 3665.765 kb on + strand, within CCNA_03507 at 3665.765 kb on + strand, within CCNA_03507 at 3665.777 kb on + strand, within CCNA_03507 at 3665.785 kb on - strand, within CCNA_03507 at 3665.804 kb on - strand, within CCNA_03507 at 3665.813 kb on + strand, within CCNA_03507 at 3665.834 kb on + strand, within CCNA_03507 at 3665.886 kb on + strand, within CCNA_03507 at 3665.886 kb on + strand at 3665.919 kb on + strand, within CCNA_03507 at 3665.965 kb on - strand, within CCNA_03507 at 3666.015 kb on + strand, within CCNA_03507 at 3666.015 kb on + strand, within CCNA_03507 at 3666.015 kb on + strand, within CCNA_03507 at 3666.023 kb on - strand, within CCNA_03507 at 3666.176 kb on - strand, within CCNA_03507 at 3666.183 kb on + strand, within CCNA_03507 at 3666.193 kb on + strand, within CCNA_03507 at 3666.193 kb on + strand, within CCNA_03507 at 3666.201 kb on - strand, within CCNA_03507 at 3666.201 kb on - strand, within CCNA_03507 at 3666.201 kb on - strand, within CCNA_03507 at 3666.213 kb on - strand, within CCNA_03507 at 3666.280 kb on - strand at 3666.280 kb on - strand at 3666.359 kb on + strand at 3666.359 kb on + strand at 3666.367 kb on - strand at 3666.367 kb on - strand at 3666.367 kb on - strand at 3666.400 kb on - strand at 3666.458 kb on - strand at 3666.458 kb on - strand at 3666.458 kb on - strand at 3666.467 kb on - strand at 3666.467 kb on - strand at 3666.526 kb on - strand, within CCNA_03508 at 3666.601 kb on + strand, within CCNA_03508 at 3666.601 kb on + strand, within CCNA_03508 at 3666.606 kb on + strand, within CCNA_03508 at 3666.608 kb on - strand, within CCNA_03508 at 3666.614 kb on - strand, within CCNA_03508 at 3666.614 kb on - strand, within CCNA_03508 at 3666.637 kb on + strand, within CCNA_03508 at 3666.672 kb on + strand, within CCNA_03508 at 3666.677 kb on + strand, within CCNA_03508 at 3666.679 kb on - strand, within CCNA_03508 at 3666.724 kb on - strand, within CCNA_03508 at 3666.753 kb on + strand, within CCNA_03508 at 3666.788 kb on + strand, within CCNA_03508 at 3666.861 kb on - strand, within CCNA_03508 at 3666.872 kb on - strand, within CCNA_03508 at 3666.940 kb on - strand, within CCNA_03508 at 3666.954 kb on + strand, within CCNA_03508 at 3666.954 kb on + strand, within CCNA_03508 at 3666.958 kb on + strand, within CCNA_03508 at 3666.958 kb on + strand, within CCNA_03508 at 3666.958 kb on + strand, within CCNA_03508 at 3667.041 kb on - strand at 3667.146 kb on - strand at 3667.162 kb on - strand at 3667.172 kb on - strand, within CCNA_03509 at 3667.219 kb on + strand, within CCNA_03509 at 3667.235 kb on - strand, within CCNA_03509 at 3667.243 kb on + strand, within CCNA_03509 at 3667.245 kb on + strand, within CCNA_03509 at 3667.245 kb on + strand, within CCNA_03509 at 3667.246 kb on - strand, within CCNA_03509 at 3667.246 kb on - strand, within CCNA_03509 at 3667.253 kb on - strand, within CCNA_03509 at 3667.282 kb on + strand, within CCNA_03509 at 3667.294 kb on + strand, within CCNA_03509 at 3667.302 kb on - strand, within CCNA_03509 at 3667.317 kb on + strand, within CCNA_03509 at 3667.373 kb on + strand, within CCNA_03509 at 3667.374 kb on - strand, within CCNA_03509 at 3667.374 kb on - strand, within CCNA_03509 at 3667.374 kb on - strand, within CCNA_03509 at 3667.381 kb on - strand, within CCNA_03509 at 3667.446 kb on - strand, within CCNA_03509 at 3667.446 kb on - strand, within CCNA_03509 at 3667.446 kb on - strand, within CCNA_03509 at 3667.446 kb on - strand, within CCNA_03509 at 3667.475 kb on + strand, within CCNA_03509 at 3667.496 kb on + strand, within CCNA_03509 at 3667.503 kb on - strand, within CCNA_03509 at 3667.503 kb on - strand, within CCNA_03509 at 3667.503 kb on - strand, within CCNA_03509 at 3667.513 kb on - strand, within CCNA_03509 at 3667.519 kb on + strand, within CCNA_03509 at 3667.604 kb on - strand, within CCNA_03509 at 3667.618 kb on - strand, within CCNA_03509 at 3667.661 kb on + strand, within CCNA_03509 at 3667.661 kb on + strand, within CCNA_03509 at 3667.669 kb on - strand, within CCNA_03509 at 3667.779 kb on - strand, within CCNA_03509 at 3667.794 kb on + strand, within CCNA_03509 at 3667.802 kb on - strand, within CCNA_03509 at 3667.804 kb on + strand, within CCNA_03509 at 3667.869 kb on + strand, within CCNA_03509 at 3667.935 kb on + strand, within CCNA_03509 at 3667.962 kb on + strand, within CCNA_03509 at 3667.962 kb on + strand, within CCNA_03509 at 3667.970 kb on - strand, within CCNA_03509 at 3667.970 kb on - strand, within CCNA_03509 at 3667.970 kb on - strand, within CCNA_03509 at 3667.994 kb on + strand, within CCNA_03509 at 3668.013 kb on - strand, within CCNA_03509 at 3668.024 kb on + strand, within CCNA_03509
Per-strain Table
Position Strand Gene LocusTag Fraction L-Phenylalanine (N) remove 3,665,494 - CCNA_03507 0.45 +1.8 3,665,504 - CCNA_03507 0.45 -0.6 3,665,526 + CCNA_03507 0.47 -0.0 3,665,539 - CCNA_03507 0.48 +0.2 3,665,633 + CCNA_03507 0.53 -0.5 3,665,643 + CCNA_03507 0.54 -0.6 3,665,651 - CCNA_03507 0.54 +0.6 3,665,685 + CCNA_03507 0.56 -0.1 3,665,720 + CCNA_03507 0.58 -0.1 3,665,765 + CCNA_03507 0.61 -0.5 3,665,765 + CCNA_03507 0.61 -1.4 3,665,777 + CCNA_03507 0.62 -3.1 3,665,785 - CCNA_03507 0.62 +1.5 3,665,804 - CCNA_03507 0.63 +1.0 3,665,813 + CCNA_03507 0.64 +2.2 3,665,834 + CCNA_03507 0.65 +1.6 3,665,886 + CCNA_03507 0.68 -0.9 3,665,886 + +5.2 3,665,919 + CCNA_03507 0.70 +1.8 3,665,965 - CCNA_03507 0.73 +1.7 3,666,015 + CCNA_03507 0.76 -1.7 3,666,015 + CCNA_03507 0.76 -2.2 3,666,015 + CCNA_03507 0.76 -0.7 3,666,023 - CCNA_03507 0.77 +1.3 3,666,176 - CCNA_03507 0.86 +1.3 3,666,183 + CCNA_03507 0.86 -0.4 3,666,193 + CCNA_03507 0.87 -0.2 3,666,193 + CCNA_03507 0.87 -0.1 3,666,201 - CCNA_03507 0.87 +0.9 3,666,201 - CCNA_03507 0.87 +2.6 3,666,201 - CCNA_03507 0.87 +1.3 3,666,213 - CCNA_03507 0.88 +1.1 3,666,280 - +0.2 3,666,280 - +1.0 3,666,359 + -0.5 3,666,359 + +1.5 3,666,367 - +0.9 3,666,367 - +1.1 3,666,367 - -1.3 3,666,400 - -0.7 3,666,458 - +0.8 3,666,458 - -1.0 3,666,458 - +0.5 3,666,467 - +0.9 3,666,467 - +0.8 3,666,526 - CCNA_03508 0.13 +1.4 3,666,601 + CCNA_03508 0.26 +0.4 3,666,601 + CCNA_03508 0.26 -1.8 3,666,606 + CCNA_03508 0.27 -1.5 3,666,608 - CCNA_03508 0.28 +0.1 3,666,614 - CCNA_03508 0.29 +2.5 3,666,614 - CCNA_03508 0.29 -0.3 3,666,637 + CCNA_03508 0.33 -0.3 3,666,672 + CCNA_03508 0.39 -1.8 3,666,677 + CCNA_03508 0.40 -1.9 3,666,679 - CCNA_03508 0.40 +0.3 3,666,724 - CCNA_03508 0.48 -0.9 3,666,753 + CCNA_03508 0.53 +2.5 3,666,788 + CCNA_03508 0.59 -0.4 3,666,861 - CCNA_03508 0.71 +0.8 3,666,872 - CCNA_03508 0.73 +1.9 3,666,940 - CCNA_03508 0.85 +1.6 3,666,954 + CCNA_03508 0.87 -0.7 3,666,954 + CCNA_03508 0.87 +0.8 3,666,958 + CCNA_03508 0.88 +0.7 3,666,958 + CCNA_03508 0.88 -0.4 3,666,958 + CCNA_03508 0.88 -0.6 3,667,041 - +0.4 3,667,146 - +2.1 3,667,162 - +0.4 3,667,172 - CCNA_03509 0.10 +0.9 3,667,219 + CCNA_03509 0.14 -0.7 3,667,235 - CCNA_03509 0.15 +1.5 3,667,243 + CCNA_03509 0.16 +0.4 3,667,245 + CCNA_03509 0.16 -0.4 3,667,245 + CCNA_03509 0.16 -1.1 3,667,246 - CCNA_03509 0.16 +0.7 3,667,246 - CCNA_03509 0.16 +0.6 3,667,253 - CCNA_03509 0.16 +1.2 3,667,282 + CCNA_03509 0.19 +0.7 3,667,294 + CCNA_03509 0.20 -1.6 3,667,302 - CCNA_03509 0.20 +0.9 3,667,317 + CCNA_03509 0.21 -0.2 3,667,373 + CCNA_03509 0.26 -1.2 3,667,374 - CCNA_03509 0.26 +0.4 3,667,374 - CCNA_03509 0.26 +0.6 3,667,374 - CCNA_03509 0.26 +0.6 3,667,381 - CCNA_03509 0.26 +1.4 3,667,446 - CCNA_03509 0.32 +1.7 3,667,446 - CCNA_03509 0.32 +0.7 3,667,446 - CCNA_03509 0.32 +3.2 3,667,446 - CCNA_03509 0.32 -0.1 3,667,475 + CCNA_03509 0.34 +1.0 3,667,496 + CCNA_03509 0.36 -1.4 3,667,503 - CCNA_03509 0.36 +0.9 3,667,503 - CCNA_03509 0.36 +0.8 3,667,503 - CCNA_03509 0.36 +1.4 3,667,513 - CCNA_03509 0.37 +1.3 3,667,519 + CCNA_03509 0.37 -0.6 3,667,604 - CCNA_03509 0.44 +0.6 3,667,618 - CCNA_03509 0.45 +1.2 3,667,661 + CCNA_03509 0.49 +0.7 3,667,661 + CCNA_03509 0.49 +0.0 3,667,669 - CCNA_03509 0.49 -0.3 3,667,779 - CCNA_03509 0.58 +1.6 3,667,794 + CCNA_03509 0.59 +0.8 3,667,802 - CCNA_03509 0.60 +0.4 3,667,804 + CCNA_03509 0.60 +0.4 3,667,869 + CCNA_03509 0.65 -0.2 3,667,935 + CCNA_03509 0.70 -0.8 3,667,962 + CCNA_03509 0.72 -2.5 3,667,962 + CCNA_03509 0.72 -1.4 3,667,970 - CCNA_03509 0.73 +1.4 3,667,970 - CCNA_03509 0.73 +0.6 3,667,970 - CCNA_03509 0.73 +1.3 3,667,994 + CCNA_03509 0.75 +0.9 3,668,013 - CCNA_03509 0.76 +2.9 3,668,024 + CCNA_03509 0.77 -1.3
Or see this region's nucleotide sequence