Experiment: D-Fructose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO353_18405 and AO353_18410 are separated by 12 nucleotides AO353_18410 and AO353_18415 are separated by 52 nucleotides
AO353_18405: AO353_18405 - LysR family transcriptional regulator, at 4,054,480 to 4,055,373
_18405
AO353_18410: AO353_18410 - hypothetical protein, at 4,055,386 to 4,055,985
_18410
AO353_18415: AO353_18415 - hypothetical protein, at 4,056,038 to 4,057,978
_18415
Position (kb)
4055
4056 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 4054.403 kb on + strand at 4054.403 kb on + strand at 4054.403 kb on + strand at 4054.407 kb on + strand at 4054.407 kb on + strand at 4054.407 kb on + strand at 4054.408 kb on - strand at 4054.408 kb on - strand at 4054.427 kb on + strand at 4054.445 kb on + strand at 4054.446 kb on - strand at 4054.597 kb on + strand, within AO353_18405 at 4054.597 kb on + strand, within AO353_18405 at 4054.597 kb on + strand, within AO353_18405 at 4054.597 kb on + strand, within AO353_18405 at 4054.597 kb on + strand, within AO353_18405 at 4054.597 kb on + strand, within AO353_18405 at 4054.597 kb on + strand, within AO353_18405 at 4054.597 kb on + strand, within AO353_18405 at 4054.597 kb on + strand, within AO353_18405 at 4054.597 kb on + strand, within AO353_18405 at 4054.598 kb on - strand, within AO353_18405 at 4054.598 kb on - strand, within AO353_18405 at 4054.598 kb on - strand, within AO353_18405 at 4054.598 kb on - strand, within AO353_18405 at 4054.598 kb on - strand, within AO353_18405 at 4054.598 kb on - strand, within AO353_18405 at 4054.735 kb on + strand, within AO353_18405 at 4054.736 kb on - strand, within AO353_18405 at 4054.736 kb on - strand, within AO353_18405 at 4054.736 kb on - strand, within AO353_18405 at 4054.840 kb on + strand, within AO353_18405 at 4054.841 kb on - strand, within AO353_18405 at 4054.972 kb on + strand, within AO353_18405 at 4054.972 kb on + strand, within AO353_18405 at 4054.972 kb on + strand, within AO353_18405 at 4054.972 kb on + strand, within AO353_18405 at 4054.972 kb on + strand, within AO353_18405 at 4054.973 kb on - strand, within AO353_18405 at 4054.973 kb on - strand, within AO353_18405 at 4054.973 kb on - strand, within AO353_18405 at 4055.005 kb on + strand, within AO353_18405 at 4055.005 kb on + strand, within AO353_18405 at 4055.005 kb on + strand, within AO353_18405 at 4055.005 kb on + strand, within AO353_18405 at 4055.006 kb on - strand, within AO353_18405 at 4055.006 kb on - strand, within AO353_18405 at 4055.006 kb on - strand, within AO353_18405 at 4055.006 kb on - strand, within AO353_18405 at 4055.006 kb on - strand, within AO353_18405 at 4055.006 kb on - strand, within AO353_18405 at 4055.006 kb on - strand, within AO353_18405 at 4055.006 kb on - strand, within AO353_18405 at 4055.151 kb on + strand, within AO353_18405 at 4055.152 kb on - strand, within AO353_18405 at 4055.188 kb on + strand, within AO353_18405 at 4055.188 kb on + strand, within AO353_18405 at 4055.188 kb on + strand, within AO353_18405 at 4055.188 kb on + strand, within AO353_18405 at 4055.189 kb on - strand, within AO353_18405 at 4055.189 kb on - strand, within AO353_18405 at 4055.189 kb on - strand, within AO353_18405 at 4055.212 kb on + strand, within AO353_18405 at 4055.212 kb on + strand, within AO353_18405 at 4055.212 kb on + strand, within AO353_18405 at 4055.212 kb on + strand, within AO353_18405 at 4055.213 kb on - strand, within AO353_18405 at 4055.385 kb on + strand at 4055.385 kb on + strand at 4055.385 kb on + strand at 4055.385 kb on + strand at 4055.385 kb on + strand at 4055.662 kb on + strand, within AO353_18410 at 4055.662 kb on + strand, within AO353_18410 at 4055.662 kb on + strand, within AO353_18410 at 4055.663 kb on - strand, within AO353_18410 at 4055.663 kb on - strand, within AO353_18410 at 4055.663 kb on - strand, within AO353_18410 at 4055.664 kb on + strand, within AO353_18410 at 4055.664 kb on + strand, within AO353_18410 at 4055.664 kb on + strand, within AO353_18410 at 4055.665 kb on - strand, within AO353_18410 at 4055.665 kb on - strand, within AO353_18410 at 4055.897 kb on + strand, within AO353_18410 at 4055.956 kb on + strand at 4055.956 kb on + strand at 4055.956 kb on + strand at 4055.956 kb on + strand at 4055.956 kb on + strand at 4055.964 kb on + strand at 4055.965 kb on - strand at 4055.965 kb on - strand at 4055.965 kb on - strand at 4055.983 kb on + strand at 4055.983 kb on + strand at 4055.984 kb on - strand at 4055.984 kb on - strand at 4056.007 kb on + strand at 4056.007 kb on + strand at 4056.007 kb on + strand at 4056.007 kb on + strand at 4056.008 kb on - strand at 4056.026 kb on + strand at 4056.036 kb on + strand at 4056.036 kb on + strand at 4056.036 kb on + strand at 4056.036 kb on + strand at 4056.036 kb on + strand at 4056.037 kb on - strand at 4056.037 kb on - strand at 4056.037 kb on - strand at 4056.037 kb on - strand at 4056.039 kb on + strand at 4056.039 kb on + strand at 4056.039 kb on + strand at 4056.039 kb on + strand at 4056.039 kb on + strand at 4056.039 kb on + strand at 4056.039 kb on + strand at 4056.039 kb on + strand at 4056.039 kb on + strand at 4056.039 kb on + strand at 4056.039 kb on + strand at 4056.039 kb on + strand at 4056.039 kb on + strand at 4056.039 kb on + strand at 4056.040 kb on - strand at 4056.040 kb on - strand at 4056.040 kb on - strand at 4056.040 kb on - strand at 4056.040 kb on - strand at 4056.040 kb on - strand at 4056.040 kb on - strand at 4056.040 kb on - strand at 4056.040 kb on - strand at 4056.125 kb on + strand at 4056.125 kb on + strand at 4056.126 kb on - strand at 4056.126 kb on - strand at 4056.126 kb on - strand at 4056.225 kb on + strand at 4056.225 kb on + strand at 4056.225 kb on + strand at 4056.225 kb on + strand at 4056.225 kb on + strand at 4056.225 kb on + strand at 4056.226 kb on - strand at 4056.226 kb on - strand at 4056.226 kb on - strand at 4056.226 kb on - strand at 4056.473 kb on - strand, within AO353_18415 at 4056.473 kb on - strand, within AO353_18415 at 4056.487 kb on + strand, within AO353_18415 at 4056.488 kb on - strand, within AO353_18415 at 4056.488 kb on - strand, within AO353_18415 at 4056.488 kb on - strand, within AO353_18415 at 4056.488 kb on - strand, within AO353_18415 at 4056.519 kb on + strand, within AO353_18415 at 4056.520 kb on - strand, within AO353_18415 at 4056.578 kb on + strand, within AO353_18415 at 4056.579 kb on - strand, within AO353_18415 at 4056.579 kb on - strand, within AO353_18415 at 4056.579 kb on - strand, within AO353_18415 at 4056.579 kb on - strand, within AO353_18415 at 4056.579 kb on - strand, within AO353_18415 at 4056.696 kb on + strand, within AO353_18415 at 4056.696 kb on + strand, within AO353_18415 at 4056.696 kb on + strand, within AO353_18415 at 4056.697 kb on - strand, within AO353_18415 at 4056.697 kb on - strand, within AO353_18415 at 4056.697 kb on - strand, within AO353_18415 at 4056.697 kb on - strand, within AO353_18415 at 4056.697 kb on - strand, within AO353_18415 at 4056.697 kb on - strand, within AO353_18415 at 4056.757 kb on + strand, within AO353_18415 at 4056.757 kb on + strand, within AO353_18415 at 4056.758 kb on - strand, within AO353_18415 at 4056.758 kb on - strand, within AO353_18415 at 4056.879 kb on + strand, within AO353_18415 at 4056.879 kb on + strand, within AO353_18415
Per-strain Table
Position Strand Gene LocusTag Fraction D-Fructose (C) remove 4,054,403 + -0.7 4,054,403 + +0.7 4,054,403 + +0.2 4,054,407 + -0.8 4,054,407 + +0.2 4,054,407 + +0.0 4,054,408 - +0.7 4,054,408 - +0.3 4,054,427 + +0.9 4,054,445 + +0.3 4,054,446 - +0.9 4,054,597 + AO353_18405 0.13 -0.4 4,054,597 + AO353_18405 0.13 -0.9 4,054,597 + AO353_18405 0.13 +0.3 4,054,597 + AO353_18405 0.13 +0.4 4,054,597 + AO353_18405 0.13 +0.3 4,054,597 + AO353_18405 0.13 +0.0 4,054,597 + AO353_18405 0.13 -0.6 4,054,597 + AO353_18405 0.13 -0.4 4,054,597 + AO353_18405 0.13 -1.4 4,054,597 + AO353_18405 0.13 +0.7 4,054,598 - AO353_18405 0.13 -0.8 4,054,598 - AO353_18405 0.13 -1.2 4,054,598 - AO353_18405 0.13 +0.2 4,054,598 - AO353_18405 0.13 -1.6 4,054,598 - AO353_18405 0.13 +0.5 4,054,598 - AO353_18405 0.13 -0.7 4,054,735 + AO353_18405 0.29 -0.0 4,054,736 - AO353_18405 0.29 +0.8 4,054,736 - AO353_18405 0.29 +0.6 4,054,736 - AO353_18405 0.29 +0.3 4,054,840 + AO353_18405 0.40 -1.1 4,054,841 - AO353_18405 0.40 +0.7 4,054,972 + AO353_18405 0.55 -0.4 4,054,972 + AO353_18405 0.55 +0.9 4,054,972 + AO353_18405 0.55 +1.3 4,054,972 + AO353_18405 0.55 -0.4 4,054,972 + AO353_18405 0.55 -0.1 4,054,973 - AO353_18405 0.55 -0.0 4,054,973 - AO353_18405 0.55 -0.7 4,054,973 - AO353_18405 0.55 +1.4 4,055,005 + AO353_18405 0.59 +0.7 4,055,005 + AO353_18405 0.59 -0.3 4,055,005 + AO353_18405 0.59 +0.5 4,055,005 + AO353_18405 0.59 -0.7 4,055,006 - AO353_18405 0.59 -0.8 4,055,006 - AO353_18405 0.59 +0.6 4,055,006 - AO353_18405 0.59 +0.3 4,055,006 - AO353_18405 0.59 +0.2 4,055,006 - AO353_18405 0.59 -2.3 4,055,006 - AO353_18405 0.59 +0.3 4,055,006 - AO353_18405 0.59 -0.6 4,055,006 - AO353_18405 0.59 +0.3 4,055,151 + AO353_18405 0.75 -0.1 4,055,152 - AO353_18405 0.75 -0.9 4,055,188 + AO353_18405 0.79 +0.4 4,055,188 + AO353_18405 0.79 -2.5 4,055,188 + AO353_18405 0.79 -1.2 4,055,188 + AO353_18405 0.79 -0.1 4,055,189 - AO353_18405 0.79 +0.9 4,055,189 - AO353_18405 0.79 +0.6 4,055,189 - AO353_18405 0.79 +0.7 4,055,212 + AO353_18405 0.82 +0.4 4,055,212 + AO353_18405 0.82 -0.9 4,055,212 + AO353_18405 0.82 -0.3 4,055,212 + AO353_18405 0.82 +0.0 4,055,213 - AO353_18405 0.82 +0.1 4,055,385 + +0.3 4,055,385 + +0.3 4,055,385 + +1.7 4,055,385 + -0.7 4,055,385 + +0.0 4,055,662 + AO353_18410 0.46 -1.0 4,055,662 + AO353_18410 0.46 +0.6 4,055,662 + AO353_18410 0.46 -0.0 4,055,663 - AO353_18410 0.46 +0.6 4,055,663 - AO353_18410 0.46 -2.2 4,055,663 - AO353_18410 0.46 -1.0 4,055,664 + AO353_18410 0.46 +0.6 4,055,664 + AO353_18410 0.46 -0.0 4,055,664 + AO353_18410 0.46 +0.1 4,055,665 - AO353_18410 0.47 +0.1 4,055,665 - AO353_18410 0.47 -0.7 4,055,897 + AO353_18410 0.85 +0.4 4,055,956 + +0.2 4,055,956 + -0.9 4,055,956 + -1.2 4,055,956 + -0.2 4,055,956 + +0.6 4,055,964 + +1.5 4,055,965 - -1.6 4,055,965 - -0.6 4,055,965 - -1.9 4,055,983 + +0.5 4,055,983 + -0.3 4,055,984 - -0.6 4,055,984 - -0.8 4,056,007 + -0.7 4,056,007 + -0.5 4,056,007 + -0.0 4,056,007 + +0.5 4,056,008 - -0.2 4,056,026 + +1.4 4,056,036 + +0.2 4,056,036 + +0.0 4,056,036 + -1.8 4,056,036 + -1.1 4,056,036 + -1.9 4,056,037 - +0.3 4,056,037 - +0.2 4,056,037 - +0.6 4,056,037 - +1.9 4,056,039 + -0.4 4,056,039 + -0.2 4,056,039 + -1.1 4,056,039 + -0.3 4,056,039 + +0.3 4,056,039 + +1.2 4,056,039 + +0.1 4,056,039 + -0.4 4,056,039 + -0.7 4,056,039 + -0.7 4,056,039 + -0.6 4,056,039 + +0.8 4,056,039 + -0.7 4,056,039 + -0.7 4,056,040 - -0.8 4,056,040 - +0.5 4,056,040 - +0.9 4,056,040 - +0.6 4,056,040 - -1.8 4,056,040 - +0.6 4,056,040 - +0.7 4,056,040 - -0.5 4,056,040 - +1.0 4,056,125 + -1.2 4,056,125 + +0.9 4,056,126 - -1.4 4,056,126 - +0.7 4,056,126 - -0.2 4,056,225 + -0.1 4,056,225 + -0.8 4,056,225 + +0.5 4,056,225 + -0.7 4,056,225 + +0.0 4,056,225 + -0.9 4,056,226 - -0.6 4,056,226 - +1.5 4,056,226 - -1.0 4,056,226 - +0.2 4,056,473 - AO353_18415 0.22 +0.4 4,056,473 - AO353_18415 0.22 +0.2 4,056,487 + AO353_18415 0.23 +0.7 4,056,488 - AO353_18415 0.23 -0.3 4,056,488 - AO353_18415 0.23 +0.3 4,056,488 - AO353_18415 0.23 -0.2 4,056,488 - AO353_18415 0.23 +0.2 4,056,519 + AO353_18415 0.25 +0.0 4,056,520 - AO353_18415 0.25 +0.8 4,056,578 + AO353_18415 0.28 -0.9 4,056,579 - AO353_18415 0.28 -1.7 4,056,579 - AO353_18415 0.28 -0.5 4,056,579 - AO353_18415 0.28 -2.0 4,056,579 - AO353_18415 0.28 +0.4 4,056,579 - AO353_18415 0.28 +1.1 4,056,696 + AO353_18415 0.34 +0.5 4,056,696 + AO353_18415 0.34 +0.3 4,056,696 + AO353_18415 0.34 +1.2 4,056,697 - AO353_18415 0.34 +0.5 4,056,697 - AO353_18415 0.34 +0.7 4,056,697 - AO353_18415 0.34 -0.9 4,056,697 - AO353_18415 0.34 +0.1 4,056,697 - AO353_18415 0.34 +0.2 4,056,697 - AO353_18415 0.34 +0.7 4,056,757 + AO353_18415 0.37 -0.7 4,056,757 + AO353_18415 0.37 +0.8 4,056,758 - AO353_18415 0.37 +0.2 4,056,758 - AO353_18415 0.37 -0.4 4,056,879 + AO353_18415 0.43 -1.2 4,056,879 + AO353_18415 0.43 -1.0
Or see this region's nucleotide sequence