Experiment: Mixed culture; Syntrophotalea carbinolica 1:1 starting OD to methanogen; 1,3-Propanediol_timecourse2; 20 generations
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MMP_RS01700 and MMP_RS01705 are separated by 77 nucleotides MMP_RS01705 and MMP_RS01710 are separated by 19 nucleotides
MMP_RS01700: MMP_RS01700 - dihydroxy-acid dehydratase, at 314,207 to 315,859
_RS01700
MMP_RS01705: MMP_RS01705 - precorrin-2 C(20)-methyltransferase, at 315,937 to 316,623
_RS01705
MMP_RS01710: MMP_RS01710 - shikimate kinase, at 316,643 to 317,494
_RS01710
Position (kb) 315
316
317 Strain fitness (log2 ratio) -7
-6
-5
-4
-3
-2
-1
0
1 at 315.361 kb on + strand, within MMP_RS01700 at 315.828 kb on + strand at 315.902 kb on + strand at 315.939 kb on + strand at 315.972 kb on + strand at 316.278 kb on - strand at 316.980 kb on + strand at 317.543 kb on + strand at 317.549 kb on - strand at 317.558 kb on + strand at 317.559 kb on - strand at 317.570 kb on - strand at 317.570 kb on - strand at 317.573 kb on - strand at 317.573 kb on - strand at 317.576 kb on - strand at 317.578 kb on - strand at 317.579 kb on + strand at 317.581 kb on - strand at 317.581 kb on - strand at 317.587 kb on + strand at 317.587 kb on + strand at 317.614 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Mixed culture; Syntrophotalea carbinolica 1:1 starting OD to methanogen; 1,3-Propanediol_timecourse2; 20 generations remove 315,361 + MMP_RS01700 0.70 -3.7 315,828 + -4.4 315,902 + -2.5 315,939 + +0.1 315,972 + -3.0 316,278 - -5.2 316,980 + -3.7 317,543 + -4.9 317,549 - -3.9 317,558 + -4.8 317,559 - -5.2 317,570 - -6.8 317,570 - -5.2 317,573 - -6.7 317,573 - -6.6 317,576 - -6.6 317,578 - -6.3 317,579 + -4.0 317,581 - -6.5 317,581 - -5.2 317,587 + -6.4 317,587 + -6.1 317,614 + -2.8
Or see this region's nucleotide sequence