Experiment: L-Fucose 20 mM (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS08875 and HMPREF1058_RS08870 are separated by 85 nucleotides HMPREF1058_RS08870 and HMPREF1058_RS08865 are separated by 92 nucleotides
HMPREF1058_RS08875: HMPREF1058_RS08875 - rhamnulose-1-phosphate aldolase, at 1,009,044 to 1,009,853
_RS08875
HMPREF1058_RS08870: HMPREF1058_RS08870 - L-rhamnose/proton symporter RhaT, at 1,009,939 to 1,010,958
_RS08870
HMPREF1058_RS08865: HMPREF1058_RS08865 - L-rhamnose isomerase, at 1,011,051 to 1,012,307
_RS08865
Position (kb)
1009
1010
1011 Strain fitness (log2 ratio)
-6
-5
-4
-3
-2
-1
0
1 at 1009.010 kb on + strand at 1009.036 kb on - strand at 1009.037 kb on + strand at 1009.045 kb on + strand at 1009.186 kb on - strand, within HMPREF1058_RS08875 at 1009.445 kb on - strand, within HMPREF1058_RS08875 at 1009.455 kb on + strand, within HMPREF1058_RS08875 at 1009.455 kb on + strand, within HMPREF1058_RS08875 at 1009.455 kb on + strand, within HMPREF1058_RS08875 at 1009.455 kb on + strand, within HMPREF1058_RS08875 at 1009.456 kb on - strand, within HMPREF1058_RS08875 at 1009.469 kb on - strand, within HMPREF1058_RS08875 at 1009.538 kb on - strand, within HMPREF1058_RS08875 at 1009.538 kb on - strand, within HMPREF1058_RS08875 at 1009.560 kb on - strand, within HMPREF1058_RS08875 at 1009.613 kb on + strand, within HMPREF1058_RS08875 at 1009.717 kb on - strand, within HMPREF1058_RS08875 at 1009.720 kb on + strand, within HMPREF1058_RS08875 at 1009.742 kb on + strand, within HMPREF1058_RS08875 at 1009.743 kb on - strand, within HMPREF1058_RS08875 at 1009.745 kb on + strand, within HMPREF1058_RS08875 at 1009.801 kb on - strand at 1009.806 kb on - strand at 1009.806 kb on - strand at 1009.915 kb on + strand at 1009.916 kb on - strand at 1009.916 kb on - strand at 1009.926 kb on + strand at 1009.927 kb on - strand at 1009.927 kb on - strand at 1009.929 kb on - strand at 1009.971 kb on + strand at 1010.005 kb on - strand at 1010.036 kb on - strand at 1010.051 kb on - strand, within HMPREF1058_RS08870 at 1010.083 kb on + strand, within HMPREF1058_RS08870 at 1010.085 kb on + strand, within HMPREF1058_RS08870 at 1010.086 kb on - strand, within HMPREF1058_RS08870 at 1010.107 kb on + strand, within HMPREF1058_RS08870 at 1010.160 kb on + strand, within HMPREF1058_RS08870 at 1010.162 kb on + strand, within HMPREF1058_RS08870 at 1010.162 kb on + strand, within HMPREF1058_RS08870 at 1010.162 kb on + strand, within HMPREF1058_RS08870 at 1010.170 kb on + strand, within HMPREF1058_RS08870 at 1010.199 kb on + strand, within HMPREF1058_RS08870 at 1010.390 kb on - strand, within HMPREF1058_RS08870 at 1010.522 kb on - strand, within HMPREF1058_RS08870 at 1010.548 kb on - strand, within HMPREF1058_RS08870 at 1010.552 kb on - strand, within HMPREF1058_RS08870 at 1010.552 kb on - strand, within HMPREF1058_RS08870 at 1010.552 kb on - strand, within HMPREF1058_RS08870 at 1010.568 kb on + strand, within HMPREF1058_RS08870 at 1010.652 kb on + strand, within HMPREF1058_RS08870 at 1010.720 kb on - strand, within HMPREF1058_RS08870 at 1010.722 kb on + strand, within HMPREF1058_RS08870 at 1010.723 kb on - strand, within HMPREF1058_RS08870 at 1010.724 kb on + strand, within HMPREF1058_RS08870 at 1010.725 kb on - strand, within HMPREF1058_RS08870 at 1010.725 kb on - strand, within HMPREF1058_RS08870 at 1010.725 kb on - strand, within HMPREF1058_RS08870 at 1010.729 kb on + strand, within HMPREF1058_RS08870 at 1010.729 kb on + strand, within HMPREF1058_RS08870 at 1010.797 kb on + strand, within HMPREF1058_RS08870 at 1010.798 kb on - strand, within HMPREF1058_RS08870 at 1010.798 kb on - strand, within HMPREF1058_RS08870 at 1010.836 kb on + strand, within HMPREF1058_RS08870 at 1010.845 kb on + strand, within HMPREF1058_RS08870 at 1010.845 kb on + strand, within HMPREF1058_RS08870 at 1010.897 kb on + strand at 1010.898 kb on - strand at 1010.898 kb on - strand at 1010.923 kb on + strand at 1010.984 kb on + strand at 1010.984 kb on + strand at 1010.985 kb on - strand at 1010.985 kb on - strand at 1010.985 kb on - strand at 1011.141 kb on - strand at 1011.147 kb on + strand at 1011.221 kb on - strand, within HMPREF1058_RS08865 at 1011.295 kb on + strand, within HMPREF1058_RS08865 at 1011.345 kb on + strand, within HMPREF1058_RS08865 at 1011.346 kb on - strand, within HMPREF1058_RS08865 at 1011.414 kb on + strand, within HMPREF1058_RS08865 at 1011.414 kb on + strand, within HMPREF1058_RS08865 at 1011.473 kb on - strand, within HMPREF1058_RS08865 at 1011.592 kb on - strand, within HMPREF1058_RS08865 at 1011.598 kb on + strand, within HMPREF1058_RS08865 at 1011.654 kb on - strand, within HMPREF1058_RS08865 at 1011.654 kb on - strand, within HMPREF1058_RS08865 at 1011.655 kb on + strand, within HMPREF1058_RS08865
Per-strain Table
Position Strand Gene LocusTag Fraction L-Fucose 20 mM (C) remove 1,009,010 + -1.7 1,009,036 - +0.2 1,009,037 + -3.9 1,009,045 + -3.3 1,009,186 - HMPREF1058_RS08875 0.18 -0.1 1,009,445 - HMPREF1058_RS08875 0.50 -6.0 1,009,455 + HMPREF1058_RS08875 0.51 -3.8 1,009,455 + HMPREF1058_RS08875 0.51 -5.3 1,009,455 + HMPREF1058_RS08875 0.51 -2.1 1,009,455 + HMPREF1058_RS08875 0.51 -5.2 1,009,456 - HMPREF1058_RS08875 0.51 -3.3 1,009,469 - HMPREF1058_RS08875 0.52 -3.2 1,009,538 - HMPREF1058_RS08875 0.61 -2.2 1,009,538 - HMPREF1058_RS08875 0.61 -1.0 1,009,560 - HMPREF1058_RS08875 0.64 -5.0 1,009,613 + HMPREF1058_RS08875 0.70 -3.1 1,009,717 - HMPREF1058_RS08875 0.83 -5.3 1,009,720 + HMPREF1058_RS08875 0.83 -5.6 1,009,742 + HMPREF1058_RS08875 0.86 -3.3 1,009,743 - HMPREF1058_RS08875 0.86 -1.1 1,009,745 + HMPREF1058_RS08875 0.87 -4.3 1,009,801 - -3.8 1,009,806 - -4.1 1,009,806 - -1.5 1,009,915 + -2.1 1,009,916 - -2.0 1,009,916 - -1.8 1,009,926 + -4.8 1,009,927 - -0.9 1,009,927 - -1.2 1,009,929 - -1.3 1,009,971 + -5.1 1,010,005 - -0.4 1,010,036 - -1.2 1,010,051 - HMPREF1058_RS08870 0.11 -1.6 1,010,083 + HMPREF1058_RS08870 0.14 -3.2 1,010,085 + HMPREF1058_RS08870 0.14 -4.0 1,010,086 - HMPREF1058_RS08870 0.14 -0.8 1,010,107 + HMPREF1058_RS08870 0.16 -5.1 1,010,160 + HMPREF1058_RS08870 0.22 -5.4 1,010,162 + HMPREF1058_RS08870 0.22 -2.0 1,010,162 + HMPREF1058_RS08870 0.22 -4.8 1,010,162 + HMPREF1058_RS08870 0.22 -1.6 1,010,170 + HMPREF1058_RS08870 0.23 -0.5 1,010,199 + HMPREF1058_RS08870 0.25 -2.7 1,010,390 - HMPREF1058_RS08870 0.44 -3.1 1,010,522 - HMPREF1058_RS08870 0.57 -1.9 1,010,548 - HMPREF1058_RS08870 0.60 -1.8 1,010,552 - HMPREF1058_RS08870 0.60 -2.3 1,010,552 - HMPREF1058_RS08870 0.60 -1.4 1,010,552 - HMPREF1058_RS08870 0.60 -2.4 1,010,568 + HMPREF1058_RS08870 0.62 -2.8 1,010,652 + HMPREF1058_RS08870 0.70 -4.3 1,010,720 - HMPREF1058_RS08870 0.77 -1.1 1,010,722 + HMPREF1058_RS08870 0.77 -4.1 1,010,723 - HMPREF1058_RS08870 0.77 -1.1 1,010,724 + HMPREF1058_RS08870 0.77 -4.0 1,010,725 - HMPREF1058_RS08870 0.77 -3.6 1,010,725 - HMPREF1058_RS08870 0.77 -1.9 1,010,725 - HMPREF1058_RS08870 0.77 -0.4 1,010,729 + HMPREF1058_RS08870 0.77 -3.8 1,010,729 + HMPREF1058_RS08870 0.77 -1.6 1,010,797 + HMPREF1058_RS08870 0.84 -4.0 1,010,798 - HMPREF1058_RS08870 0.84 -2.4 1,010,798 - HMPREF1058_RS08870 0.84 -2.7 1,010,836 + HMPREF1058_RS08870 0.88 -4.3 1,010,845 + HMPREF1058_RS08870 0.89 -4.2 1,010,845 + HMPREF1058_RS08870 0.89 -3.4 1,010,897 + -5.2 1,010,898 - -2.4 1,010,898 - -3.0 1,010,923 + -3.5 1,010,984 + -4.2 1,010,984 + -4.7 1,010,985 - -0.8 1,010,985 - -0.7 1,010,985 - -1.1 1,011,141 - +0.1 1,011,147 + -4.4 1,011,221 - HMPREF1058_RS08865 0.14 -0.6 1,011,295 + HMPREF1058_RS08865 0.19 -4.3 1,011,345 + HMPREF1058_RS08865 0.23 -4.5 1,011,346 - HMPREF1058_RS08865 0.23 -0.9 1,011,414 + HMPREF1058_RS08865 0.29 -3.0 1,011,414 + HMPREF1058_RS08865 0.29 -3.7 1,011,473 - HMPREF1058_RS08865 0.34 -1.3 1,011,592 - HMPREF1058_RS08865 0.43 -0.7 1,011,598 + HMPREF1058_RS08865 0.44 -5.1 1,011,654 - HMPREF1058_RS08865 0.48 -3.1 1,011,654 - HMPREF1058_RS08865 0.48 -3.7 1,011,655 + HMPREF1058_RS08865 0.48 -3.9
Or see this region's nucleotide sequence