Strain Fitness in Phocaeicola vulgatus CL09T03C04 around HMPREF1058_RS08870

Experiment: L-Fucose 20 mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHMPREF1058_RS08875 and HMPREF1058_RS08870 are separated by 85 nucleotidesHMPREF1058_RS08870 and HMPREF1058_RS08865 are separated by 92 nucleotides HMPREF1058_RS08875: HMPREF1058_RS08875 - rhamnulose-1-phosphate aldolase, at 1,009,044 to 1,009,853 _RS08875 HMPREF1058_RS08870: HMPREF1058_RS08870 - L-rhamnose/proton symporter RhaT, at 1,009,939 to 1,010,958 _RS08870 HMPREF1058_RS08865: HMPREF1058_RS08865 - L-rhamnose isomerase, at 1,011,051 to 1,012,307 _RS08865 Position (kb) 1009 1010 1011Strain fitness (log2 ratio) -6 -5 -4 -3 -2 -1 0 1at 1009.010 kb on + strandat 1009.036 kb on - strandat 1009.037 kb on + strandat 1009.045 kb on + strandat 1009.186 kb on - strand, within HMPREF1058_RS08875at 1009.445 kb on - strand, within HMPREF1058_RS08875at 1009.455 kb on + strand, within HMPREF1058_RS08875at 1009.455 kb on + strand, within HMPREF1058_RS08875at 1009.455 kb on + strand, within HMPREF1058_RS08875at 1009.455 kb on + strand, within HMPREF1058_RS08875at 1009.456 kb on - strand, within HMPREF1058_RS08875at 1009.469 kb on - strand, within HMPREF1058_RS08875at 1009.538 kb on - strand, within HMPREF1058_RS08875at 1009.538 kb on - strand, within HMPREF1058_RS08875at 1009.560 kb on - strand, within HMPREF1058_RS08875at 1009.613 kb on + strand, within HMPREF1058_RS08875at 1009.717 kb on - strand, within HMPREF1058_RS08875at 1009.720 kb on + strand, within HMPREF1058_RS08875at 1009.742 kb on + strand, within HMPREF1058_RS08875at 1009.743 kb on - strand, within HMPREF1058_RS08875at 1009.745 kb on + strand, within HMPREF1058_RS08875at 1009.801 kb on - strandat 1009.806 kb on - strandat 1009.806 kb on - strandat 1009.915 kb on + strandat 1009.916 kb on - strandat 1009.916 kb on - strandat 1009.926 kb on + strandat 1009.927 kb on - strandat 1009.927 kb on - strandat 1009.929 kb on - strandat 1009.971 kb on + strandat 1010.005 kb on - strandat 1010.036 kb on - strandat 1010.051 kb on - strand, within HMPREF1058_RS08870at 1010.083 kb on + strand, within HMPREF1058_RS08870at 1010.085 kb on + strand, within HMPREF1058_RS08870at 1010.086 kb on - strand, within HMPREF1058_RS08870at 1010.107 kb on + strand, within HMPREF1058_RS08870at 1010.160 kb on + strand, within HMPREF1058_RS08870at 1010.162 kb on + strand, within HMPREF1058_RS08870at 1010.162 kb on + strand, within HMPREF1058_RS08870at 1010.162 kb on + strand, within HMPREF1058_RS08870at 1010.170 kb on + strand, within HMPREF1058_RS08870at 1010.199 kb on + strand, within HMPREF1058_RS08870at 1010.390 kb on - strand, within HMPREF1058_RS08870at 1010.522 kb on - strand, within HMPREF1058_RS08870at 1010.548 kb on - strand, within HMPREF1058_RS08870at 1010.552 kb on - strand, within HMPREF1058_RS08870at 1010.552 kb on - strand, within HMPREF1058_RS08870at 1010.552 kb on - strand, within HMPREF1058_RS08870at 1010.568 kb on + strand, within HMPREF1058_RS08870at 1010.652 kb on + strand, within HMPREF1058_RS08870at 1010.720 kb on - strand, within HMPREF1058_RS08870at 1010.722 kb on + strand, within HMPREF1058_RS08870at 1010.723 kb on - strand, within HMPREF1058_RS08870at 1010.724 kb on + strand, within HMPREF1058_RS08870at 1010.725 kb on - strand, within HMPREF1058_RS08870at 1010.725 kb on - strand, within HMPREF1058_RS08870at 1010.725 kb on - strand, within HMPREF1058_RS08870at 1010.729 kb on + strand, within HMPREF1058_RS08870at 1010.729 kb on + strand, within HMPREF1058_RS08870at 1010.797 kb on + strand, within HMPREF1058_RS08870at 1010.798 kb on - strand, within HMPREF1058_RS08870at 1010.798 kb on - strand, within HMPREF1058_RS08870at 1010.836 kb on + strand, within HMPREF1058_RS08870at 1010.845 kb on + strand, within HMPREF1058_RS08870at 1010.845 kb on + strand, within HMPREF1058_RS08870at 1010.897 kb on + strandat 1010.898 kb on - strandat 1010.898 kb on - strandat 1010.923 kb on + strandat 1010.984 kb on + strandat 1010.984 kb on + strandat 1010.985 kb on - strandat 1010.985 kb on - strandat 1010.985 kb on - strandat 1011.141 kb on - strandat 1011.147 kb on + strandat 1011.221 kb on - strand, within HMPREF1058_RS08865at 1011.295 kb on + strand, within HMPREF1058_RS08865at 1011.345 kb on + strand, within HMPREF1058_RS08865at 1011.346 kb on - strand, within HMPREF1058_RS08865at 1011.414 kb on + strand, within HMPREF1058_RS08865at 1011.414 kb on + strand, within HMPREF1058_RS08865at 1011.473 kb on - strand, within HMPREF1058_RS08865at 1011.592 kb on - strand, within HMPREF1058_RS08865at 1011.598 kb on + strand, within HMPREF1058_RS08865at 1011.654 kb on - strand, within HMPREF1058_RS08865at 1011.654 kb on - strand, within HMPREF1058_RS08865at 1011.655 kb on + strand, within HMPREF1058_RS08865

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Fucose 20 mM (C)
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1,009,010 + -1.7
1,009,036 - +0.2
1,009,037 + -3.9
1,009,045 + -3.3
1,009,186 - HMPREF1058_RS08875 0.18 -0.1
1,009,445 - HMPREF1058_RS08875 0.50 -6.0
1,009,455 + HMPREF1058_RS08875 0.51 -3.8
1,009,455 + HMPREF1058_RS08875 0.51 -5.3
1,009,455 + HMPREF1058_RS08875 0.51 -2.1
1,009,455 + HMPREF1058_RS08875 0.51 -5.2
1,009,456 - HMPREF1058_RS08875 0.51 -3.3
1,009,469 - HMPREF1058_RS08875 0.52 -3.2
1,009,538 - HMPREF1058_RS08875 0.61 -2.2
1,009,538 - HMPREF1058_RS08875 0.61 -1.0
1,009,560 - HMPREF1058_RS08875 0.64 -5.0
1,009,613 + HMPREF1058_RS08875 0.70 -3.1
1,009,717 - HMPREF1058_RS08875 0.83 -5.3
1,009,720 + HMPREF1058_RS08875 0.83 -5.6
1,009,742 + HMPREF1058_RS08875 0.86 -3.3
1,009,743 - HMPREF1058_RS08875 0.86 -1.1
1,009,745 + HMPREF1058_RS08875 0.87 -4.3
1,009,801 - -3.8
1,009,806 - -4.1
1,009,806 - -1.5
1,009,915 + -2.1
1,009,916 - -2.0
1,009,916 - -1.8
1,009,926 + -4.8
1,009,927 - -0.9
1,009,927 - -1.2
1,009,929 - -1.3
1,009,971 + -5.1
1,010,005 - -0.4
1,010,036 - -1.2
1,010,051 - HMPREF1058_RS08870 0.11 -1.6
1,010,083 + HMPREF1058_RS08870 0.14 -3.2
1,010,085 + HMPREF1058_RS08870 0.14 -4.0
1,010,086 - HMPREF1058_RS08870 0.14 -0.8
1,010,107 + HMPREF1058_RS08870 0.16 -5.1
1,010,160 + HMPREF1058_RS08870 0.22 -5.4
1,010,162 + HMPREF1058_RS08870 0.22 -2.0
1,010,162 + HMPREF1058_RS08870 0.22 -4.8
1,010,162 + HMPREF1058_RS08870 0.22 -1.6
1,010,170 + HMPREF1058_RS08870 0.23 -0.5
1,010,199 + HMPREF1058_RS08870 0.25 -2.7
1,010,390 - HMPREF1058_RS08870 0.44 -3.1
1,010,522 - HMPREF1058_RS08870 0.57 -1.9
1,010,548 - HMPREF1058_RS08870 0.60 -1.8
1,010,552 - HMPREF1058_RS08870 0.60 -2.3
1,010,552 - HMPREF1058_RS08870 0.60 -1.4
1,010,552 - HMPREF1058_RS08870 0.60 -2.4
1,010,568 + HMPREF1058_RS08870 0.62 -2.8
1,010,652 + HMPREF1058_RS08870 0.70 -4.3
1,010,720 - HMPREF1058_RS08870 0.77 -1.1
1,010,722 + HMPREF1058_RS08870 0.77 -4.1
1,010,723 - HMPREF1058_RS08870 0.77 -1.1
1,010,724 + HMPREF1058_RS08870 0.77 -4.0
1,010,725 - HMPREF1058_RS08870 0.77 -3.6
1,010,725 - HMPREF1058_RS08870 0.77 -1.9
1,010,725 - HMPREF1058_RS08870 0.77 -0.4
1,010,729 + HMPREF1058_RS08870 0.77 -3.8
1,010,729 + HMPREF1058_RS08870 0.77 -1.6
1,010,797 + HMPREF1058_RS08870 0.84 -4.0
1,010,798 - HMPREF1058_RS08870 0.84 -2.4
1,010,798 - HMPREF1058_RS08870 0.84 -2.7
1,010,836 + HMPREF1058_RS08870 0.88 -4.3
1,010,845 + HMPREF1058_RS08870 0.89 -4.2
1,010,845 + HMPREF1058_RS08870 0.89 -3.4
1,010,897 + -5.2
1,010,898 - -2.4
1,010,898 - -3.0
1,010,923 + -3.5
1,010,984 + -4.2
1,010,984 + -4.7
1,010,985 - -0.8
1,010,985 - -0.7
1,010,985 - -1.1
1,011,141 - +0.1
1,011,147 + -4.4
1,011,221 - HMPREF1058_RS08865 0.14 -0.6
1,011,295 + HMPREF1058_RS08865 0.19 -4.3
1,011,345 + HMPREF1058_RS08865 0.23 -4.5
1,011,346 - HMPREF1058_RS08865 0.23 -0.9
1,011,414 + HMPREF1058_RS08865 0.29 -3.0
1,011,414 + HMPREF1058_RS08865 0.29 -3.7
1,011,473 - HMPREF1058_RS08865 0.34 -1.3
1,011,592 - HMPREF1058_RS08865 0.43 -0.7
1,011,598 + HMPREF1058_RS08865 0.44 -5.1
1,011,654 - HMPREF1058_RS08865 0.48 -3.1
1,011,654 - HMPREF1058_RS08865 0.48 -3.7
1,011,655 + HMPREF1058_RS08865 0.48 -3.9

Or see this region's nucleotide sequence