Experiment: L-Fucose 20 mM (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS08865 and HMPREF1058_RS08860 are separated by 39 nucleotides HMPREF1058_RS08860 and HMPREF1058_RS08855 are separated by 306 nucleotides HMPREF1058_RS08855 and HMPREF1058_RS08850 are separated by 22 nucleotides
HMPREF1058_RS08865: HMPREF1058_RS08865 - L-rhamnose isomerase, at 1,011,051 to 1,012,307
_RS08865
HMPREF1058_RS08860: HMPREF1058_RS08860 - rhamnulokinase, at 1,012,347 to 1,013,825
_RS08860
HMPREF1058_RS08855: HMPREF1058_RS08855 - arginine repressor, at 1,014,132 to 1,014,608
_RS08855
HMPREF1058_RS08850: HMPREF1058_RS08850 - N-acetyltransferase, at 1,014,631 to 1,015,188
_RS08850
Position (kb)
1012
1013
1014 Strain fitness (log2 ratio)
-8
-7
-6
-5
-4
-3
-2
-1
0
1
2 at 1011.414 kb on + strand, within HMPREF1058_RS08865 at 1011.414 kb on + strand, within HMPREF1058_RS08865 at 1011.473 kb on - strand, within HMPREF1058_RS08865 at 1011.592 kb on - strand, within HMPREF1058_RS08865 at 1011.598 kb on + strand, within HMPREF1058_RS08865 at 1011.654 kb on - strand, within HMPREF1058_RS08865 at 1011.654 kb on - strand, within HMPREF1058_RS08865 at 1011.655 kb on + strand, within HMPREF1058_RS08865 at 1012.044 kb on + strand, within HMPREF1058_RS08865 at 1012.044 kb on + strand, within HMPREF1058_RS08865 at 1012.045 kb on - strand, within HMPREF1058_RS08865 at 1012.046 kb on + strand, within HMPREF1058_RS08865 at 1012.046 kb on + strand, within HMPREF1058_RS08865 at 1012.047 kb on - strand, within HMPREF1058_RS08865 at 1012.048 kb on + strand, within HMPREF1058_RS08865 at 1012.048 kb on + strand, within HMPREF1058_RS08865 at 1012.049 kb on - strand, within HMPREF1058_RS08865 at 1012.049 kb on - strand, within HMPREF1058_RS08865 at 1012.049 kb on - strand, within HMPREF1058_RS08865 at 1012.049 kb on - strand, within HMPREF1058_RS08865 at 1012.113 kb on - strand, within HMPREF1058_RS08865 at 1012.286 kb on + strand at 1012.311 kb on - strand at 1012.346 kb on - strand at 1012.353 kb on - strand at 1012.382 kb on + strand at 1012.383 kb on - strand at 1012.449 kb on + strand at 1012.461 kb on - strand at 1012.551 kb on + strand, within HMPREF1058_RS08860 at 1012.655 kb on - strand, within HMPREF1058_RS08860 at 1012.728 kb on + strand, within HMPREF1058_RS08860 at 1013.001 kb on + strand, within HMPREF1058_RS08860 at 1013.002 kb on - strand, within HMPREF1058_RS08860 at 1013.004 kb on - strand, within HMPREF1058_RS08860 at 1013.334 kb on - strand, within HMPREF1058_RS08860 at 1013.354 kb on + strand, within HMPREF1058_RS08860 at 1013.367 kb on - strand, within HMPREF1058_RS08860 at 1013.463 kb on + strand, within HMPREF1058_RS08860 at 1013.481 kb on - strand, within HMPREF1058_RS08860 at 1013.486 kb on + strand, within HMPREF1058_RS08860 at 1013.533 kb on + strand, within HMPREF1058_RS08860 at 1013.548 kb on - strand, within HMPREF1058_RS08860 at 1013.617 kb on - strand, within HMPREF1058_RS08860 at 1013.652 kb on - strand, within HMPREF1058_RS08860 at 1013.662 kb on + strand, within HMPREF1058_RS08860 at 1013.662 kb on + strand, within HMPREF1058_RS08860 at 1013.703 kb on + strand at 1013.708 kb on + strand at 1013.766 kb on + strand at 1013.766 kb on + strand at 1013.766 kb on + strand at 1013.767 kb on - strand at 1013.775 kb on - strand at 1013.812 kb on + strand at 1013.851 kb on + strand at 1013.907 kb on + strand at 1013.908 kb on - strand at 1013.909 kb on + strand at 1013.928 kb on + strand at 1013.928 kb on + strand at 1013.944 kb on + strand at 1013.961 kb on + strand at 1014.079 kb on + strand at 1014.080 kb on - strand at 1014.080 kb on - strand at 1014.081 kb on + strand at 1014.191 kb on - strand, within HMPREF1058_RS08855 at 1014.252 kb on - strand, within HMPREF1058_RS08855 at 1014.317 kb on - strand, within HMPREF1058_RS08855 at 1014.318 kb on + strand, within HMPREF1058_RS08855 at 1014.318 kb on + strand, within HMPREF1058_RS08855 at 1014.318 kb on + strand, within HMPREF1058_RS08855 at 1014.319 kb on - strand, within HMPREF1058_RS08855 at 1014.323 kb on - strand, within HMPREF1058_RS08855 at 1014.323 kb on - strand, within HMPREF1058_RS08855 at 1014.335 kb on + strand, within HMPREF1058_RS08855 at 1014.343 kb on - strand, within HMPREF1058_RS08855 at 1014.343 kb on - strand, within HMPREF1058_RS08855 at 1014.343 kb on - strand, within HMPREF1058_RS08855 at 1014.431 kb on - strand, within HMPREF1058_RS08855 at 1014.468 kb on + strand, within HMPREF1058_RS08855 at 1014.510 kb on - strand, within HMPREF1058_RS08855 at 1014.510 kb on - strand, within HMPREF1058_RS08855 at 1014.527 kb on + strand, within HMPREF1058_RS08855 at 1014.528 kb on - strand, within HMPREF1058_RS08855 at 1014.528 kb on - strand, within HMPREF1058_RS08855 at 1014.593 kb on - strand at 1014.602 kb on - strand at 1014.606 kb on + strand at 1014.612 kb on - strand at 1014.616 kb on + strand at 1014.616 kb on + strand at 1014.617 kb on - strand at 1014.702 kb on + strand, within HMPREF1058_RS08850 at 1014.703 kb on - strand, within HMPREF1058_RS08850 at 1014.761 kb on - strand, within HMPREF1058_RS08850
Per-strain Table
Position Strand Gene LocusTag Fraction L-Fucose 20 mM (C) remove 1,011,414 + HMPREF1058_RS08865 0.29 -3.0 1,011,414 + HMPREF1058_RS08865 0.29 -3.7 1,011,473 - HMPREF1058_RS08865 0.34 -1.3 1,011,592 - HMPREF1058_RS08865 0.43 -0.7 1,011,598 + HMPREF1058_RS08865 0.44 -5.1 1,011,654 - HMPREF1058_RS08865 0.48 -3.1 1,011,654 - HMPREF1058_RS08865 0.48 -3.7 1,011,655 + HMPREF1058_RS08865 0.48 -3.9 1,012,044 + HMPREF1058_RS08865 0.79 -3.8 1,012,044 + HMPREF1058_RS08865 0.79 -5.2 1,012,045 - HMPREF1058_RS08865 0.79 +0.3 1,012,046 + HMPREF1058_RS08865 0.79 -2.7 1,012,046 + HMPREF1058_RS08865 0.79 -4.7 1,012,047 - HMPREF1058_RS08865 0.79 -3.1 1,012,048 + HMPREF1058_RS08865 0.79 -3.3 1,012,048 + HMPREF1058_RS08865 0.79 -2.8 1,012,049 - HMPREF1058_RS08865 0.79 -2.2 1,012,049 - HMPREF1058_RS08865 0.79 -4.0 1,012,049 - HMPREF1058_RS08865 0.79 -2.2 1,012,049 - HMPREF1058_RS08865 0.79 -3.0 1,012,113 - HMPREF1058_RS08865 0.84 -3.2 1,012,286 + -3.5 1,012,311 - -1.3 1,012,346 - -1.9 1,012,353 - -1.6 1,012,382 + -5.7 1,012,383 - -0.7 1,012,449 + -1.3 1,012,461 - -3.9 1,012,551 + HMPREF1058_RS08860 0.14 -5.4 1,012,655 - HMPREF1058_RS08860 0.21 -3.8 1,012,728 + HMPREF1058_RS08860 0.26 -4.3 1,013,001 + HMPREF1058_RS08860 0.44 -0.1 1,013,002 - HMPREF1058_RS08860 0.44 -4.5 1,013,004 - HMPREF1058_RS08860 0.44 -2.5 1,013,334 - HMPREF1058_RS08860 0.67 -5.4 1,013,354 + HMPREF1058_RS08860 0.68 -3.5 1,013,367 - HMPREF1058_RS08860 0.69 -3.7 1,013,463 + HMPREF1058_RS08860 0.75 +1.9 1,013,481 - HMPREF1058_RS08860 0.77 -4.6 1,013,486 + HMPREF1058_RS08860 0.77 -5.3 1,013,533 + HMPREF1058_RS08860 0.80 -3.5 1,013,548 - HMPREF1058_RS08860 0.81 -5.5 1,013,617 - HMPREF1058_RS08860 0.86 -5.4 1,013,652 - HMPREF1058_RS08860 0.88 -1.7 1,013,662 + HMPREF1058_RS08860 0.89 -1.1 1,013,662 + HMPREF1058_RS08860 0.89 -3.8 1,013,703 + -6.5 1,013,708 + -1.1 1,013,766 + -3.8 1,013,766 + -1.8 1,013,766 + +1.9 1,013,767 - -0.5 1,013,775 - -3.4 1,013,812 + -5.3 1,013,851 + -4.2 1,013,907 + -4.1 1,013,908 - +0.9 1,013,909 + -4.7 1,013,928 + -4.1 1,013,928 + -1.7 1,013,944 + -1.3 1,013,961 + -0.7 1,014,079 + -0.9 1,014,080 - -5.4 1,014,080 - -4.2 1,014,081 + -0.1 1,014,191 - HMPREF1058_RS08855 0.12 -3.7 1,014,252 - HMPREF1058_RS08855 0.25 -1.3 1,014,317 - HMPREF1058_RS08855 0.39 -5.6 1,014,318 + HMPREF1058_RS08855 0.39 -0.7 1,014,318 + HMPREF1058_RS08855 0.39 -1.5 1,014,318 + HMPREF1058_RS08855 0.39 -2.8 1,014,319 - HMPREF1058_RS08855 0.39 -3.1 1,014,323 - HMPREF1058_RS08855 0.40 -5.6 1,014,323 - HMPREF1058_RS08855 0.40 -4.8 1,014,335 + HMPREF1058_RS08855 0.43 -2.3 1,014,343 - HMPREF1058_RS08855 0.44 -6.5 1,014,343 - HMPREF1058_RS08855 0.44 -4.9 1,014,343 - HMPREF1058_RS08855 0.44 -0.7 1,014,431 - HMPREF1058_RS08855 0.63 -4.9 1,014,468 + HMPREF1058_RS08855 0.70 -3.8 1,014,510 - HMPREF1058_RS08855 0.79 -7.2 1,014,510 - HMPREF1058_RS08855 0.79 -4.1 1,014,527 + HMPREF1058_RS08855 0.83 -3.2 1,014,528 - HMPREF1058_RS08855 0.83 -6.7 1,014,528 - HMPREF1058_RS08855 0.83 -3.5 1,014,593 - -4.1 1,014,602 - -2.5 1,014,606 + -0.3 1,014,612 - -4.8 1,014,616 + -2.1 1,014,616 + -2.0 1,014,617 - -1.1 1,014,702 + HMPREF1058_RS08850 0.13 -4.3 1,014,703 - HMPREF1058_RS08850 0.13 -3.3 1,014,761 - HMPREF1058_RS08850 0.23 -8.1
Or see this region's nucleotide sequence