Strain Fitness in Rahnella sp. WP5 around EX31_RS20830

Experiment: Ammonium chloride (N); ShewMM media; shaking

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX31_RS20825 and EX31_RS20830 are separated by 34 nucleotidesEX31_RS20830 and EX31_RS26100 are separated by 164 nucleotidesEX31_RS26100 and EX31_RS20835 are separated by 70 nucleotidesEX31_RS20835 and EX31_RS20840 are separated by 36 nucleotidesEX31_RS20840 and EX31_RS20845 are separated by 32 nucleotides EX31_RS20825: EX31_RS20825 - aldo/keto reductase, at 814,178 to 815,167 _RS20825 EX31_RS20830: EX31_RS20830 - LysR family transcriptional regulator, at 815,202 to 816,095 _RS20830 EX31_RS26100: EX31_RS26100 - AraC family transcriptional regulator, at 816,260 to 816,334 _RS26100 EX31_RS20835: EX31_RS20835 - NIPSNAP family containing protein, at 816,405 to 816,731 _RS20835 EX31_RS20840: EX31_RS20840 - hypothetical protein, at 816,768 to 816,989 _RS20840 EX31_RS20845: EX31_RS20845 - hypothetical protein, at 817,022 to 817,273 _RS20845 Position (kb) 815 816 817Strain fitness (log2 ratio) -1 0 1 2 3at 814.273 kb on + strandat 814.346 kb on + strand, within EX31_RS20825at 814.346 kb on + strand, within EX31_RS20825at 814.346 kb on + strand, within EX31_RS20825at 814.346 kb on + strand, within EX31_RS20825at 814.346 kb on + strand, within EX31_RS20825at 814.346 kb on + strand, within EX31_RS20825at 814.347 kb on - strand, within EX31_RS20825at 814.347 kb on - strand, within EX31_RS20825at 814.347 kb on - strand, within EX31_RS20825at 814.386 kb on + strand, within EX31_RS20825at 814.433 kb on - strand, within EX31_RS20825at 814.509 kb on + strand, within EX31_RS20825at 814.509 kb on + strand, within EX31_RS20825at 814.509 kb on + strand, within EX31_RS20825at 814.510 kb on - strand, within EX31_RS20825at 814.510 kb on - strand, within EX31_RS20825at 814.520 kb on - strand, within EX31_RS20825at 814.531 kb on + strand, within EX31_RS20825at 814.531 kb on + strand, within EX31_RS20825at 814.532 kb on - strand, within EX31_RS20825at 814.532 kb on - strand, within EX31_RS20825at 814.532 kb on - strand, within EX31_RS20825at 814.544 kb on + strand, within EX31_RS20825at 814.608 kb on + strand, within EX31_RS20825at 814.609 kb on - strand, within EX31_RS20825at 814.624 kb on + strand, within EX31_RS20825at 814.624 kb on + strand, within EX31_RS20825at 814.681 kb on - strand, within EX31_RS20825at 814.681 kb on - strand, within EX31_RS20825at 814.681 kb on - strand, within EX31_RS20825at 814.681 kb on - strand, within EX31_RS20825at 814.799 kb on - strand, within EX31_RS20825at 814.853 kb on + strand, within EX31_RS20825at 815.132 kb on + strandat 815.132 kb on + strandat 815.133 kb on - strandat 815.169 kb on - strandat 815.204 kb on - strandat 815.269 kb on + strandat 815.270 kb on - strandat 815.270 kb on - strandat 815.270 kb on - strandat 815.272 kb on + strandat 815.272 kb on + strandat 815.273 kb on - strandat 815.278 kb on + strandat 815.278 kb on + strandat 815.337 kb on + strand, within EX31_RS20830at 815.338 kb on - strand, within EX31_RS20830at 815.339 kb on + strand, within EX31_RS20830at 815.339 kb on + strand, within EX31_RS20830at 815.339 kb on + strand, within EX31_RS20830at 815.339 kb on + strand, within EX31_RS20830at 815.339 kb on + strand, within EX31_RS20830at 815.340 kb on - strand, within EX31_RS20830at 815.340 kb on - strand, within EX31_RS20830at 815.340 kb on - strand, within EX31_RS20830at 815.340 kb on - strand, within EX31_RS20830at 815.340 kb on - strand, within EX31_RS20830at 815.340 kb on - strand, within EX31_RS20830at 815.340 kb on - strand, within EX31_RS20830at 815.340 kb on - strand, within EX31_RS20830at 815.342 kb on - strand, within EX31_RS20830at 815.342 kb on - strand, within EX31_RS20830at 815.342 kb on - strand, within EX31_RS20830at 815.342 kb on - strand, within EX31_RS20830at 815.342 kb on - strand, within EX31_RS20830at 815.342 kb on - strand, within EX31_RS20830at 815.349 kb on + strand, within EX31_RS20830at 815.364 kb on + strand, within EX31_RS20830at 815.364 kb on + strand, within EX31_RS20830at 815.364 kb on + strand, within EX31_RS20830at 815.365 kb on - strand, within EX31_RS20830at 815.365 kb on - strand, within EX31_RS20830at 815.366 kb on + strand, within EX31_RS20830at 815.367 kb on - strand, within EX31_RS20830at 815.367 kb on - strand, within EX31_RS20830at 815.367 kb on - strand, within EX31_RS20830at 815.367 kb on - strand, within EX31_RS20830at 815.367 kb on - strand, within EX31_RS20830at 815.367 kb on - strand, within EX31_RS20830at 815.389 kb on - strand, within EX31_RS20830at 815.421 kb on - strand, within EX31_RS20830at 815.421 kb on - strand, within EX31_RS20830at 815.514 kb on - strand, within EX31_RS20830at 815.536 kb on - strand, within EX31_RS20830at 815.575 kb on + strand, within EX31_RS20830at 815.575 kb on + strand, within EX31_RS20830at 815.576 kb on - strand, within EX31_RS20830at 815.691 kb on - strand, within EX31_RS20830at 815.691 kb on - strand, within EX31_RS20830at 815.727 kb on - strand, within EX31_RS20830at 815.802 kb on + strand, within EX31_RS20830at 815.810 kb on + strand, within EX31_RS20830at 815.810 kb on + strand, within EX31_RS20830at 815.811 kb on - strand, within EX31_RS20830at 815.811 kb on - strand, within EX31_RS20830at 815.895 kb on - strand, within EX31_RS20830at 815.895 kb on - strand, within EX31_RS20830at 816.052 kb on - strandat 816.127 kb on + strandat 816.128 kb on - strandat 816.128 kb on - strandat 816.190 kb on + strandat 816.203 kb on - strandat 816.217 kb on + strandat 816.217 kb on + strandat 816.218 kb on - strandat 816.218 kb on - strandat 816.229 kb on - strandat 816.282 kb on + strand, within EX31_RS26100at 816.282 kb on + strand, within EX31_RS26100at 816.283 kb on - strand, within EX31_RS26100at 816.283 kb on - strand, within EX31_RS26100at 816.287 kb on - strand, within EX31_RS26100at 816.339 kb on + strandat 816.339 kb on + strandat 816.339 kb on + strandat 816.340 kb on - strandat 816.373 kb on + strandat 816.389 kb on - strandat 816.390 kb on + strandat 816.398 kb on + strandat 816.399 kb on - strandat 816.429 kb on + strandat 816.429 kb on + strandat 816.430 kb on - strandat 816.430 kb on - strandat 816.430 kb on - strandat 816.436 kb on + strandat 816.437 kb on - strandat 816.555 kb on + strand, within EX31_RS20835at 816.555 kb on + strand, within EX31_RS20835at 816.555 kb on + strand, within EX31_RS20835at 816.556 kb on - strand, within EX31_RS20835at 816.558 kb on + strand, within EX31_RS20835at 816.558 kb on + strand, within EX31_RS20835at 816.558 kb on + strand, within EX31_RS20835at 816.559 kb on - strand, within EX31_RS20835at 816.559 kb on - strand, within EX31_RS20835at 816.559 kb on - strand, within EX31_RS20835at 816.559 kb on - strand, within EX31_RS20835at 816.559 kb on - strand, within EX31_RS20835at 816.615 kb on + strand, within EX31_RS20835at 816.615 kb on + strand, within EX31_RS20835at 816.615 kb on + strand, within EX31_RS20835at 816.615 kb on + strand, within EX31_RS20835at 816.615 kb on + strand, within EX31_RS20835at 816.616 kb on - strand, within EX31_RS20835at 816.616 kb on - strand, within EX31_RS20835at 816.616 kb on - strand, within EX31_RS20835at 816.616 kb on - strand, within EX31_RS20835at 816.616 kb on - strand, within EX31_RS20835at 816.616 kb on - strand, within EX31_RS20835at 816.616 kb on - strand, within EX31_RS20835at 816.662 kb on + strand, within EX31_RS20835at 816.662 kb on + strand, within EX31_RS20835at 816.662 kb on + strand, within EX31_RS20835at 816.663 kb on - strand, within EX31_RS20835at 816.680 kb on + strand, within EX31_RS20835at 816.680 kb on + strand, within EX31_RS20835at 816.729 kb on + strandat 816.748 kb on + strandat 816.748 kb on + strandat 816.750 kb on + strandat 816.750 kb on + strandat 816.750 kb on + strandat 816.750 kb on + strandat 816.750 kb on + strandat 816.750 kb on + strandat 816.751 kb on - strandat 816.751 kb on - strandat 816.751 kb on - strandat 816.755 kb on + strandat 816.755 kb on + strandat 816.755 kb on + strandat 816.755 kb on + strandat 816.756 kb on - strandat 816.758 kb on + strandat 816.764 kb on + strandat 816.784 kb on + strandat 816.784 kb on + strandat 816.784 kb on + strandat 816.784 kb on + strandat 816.785 kb on - strandat 816.785 kb on - strandat 816.911 kb on - strand, within EX31_RS20840at 816.911 kb on - strand, within EX31_RS20840at 816.914 kb on + strand, within EX31_RS20840at 816.915 kb on - strand, within EX31_RS20840at 816.993 kb on + strandat 816.994 kb on - strandat 816.995 kb on + strandat 817.000 kb on + strandat 817.001 kb on - strandat 817.007 kb on + strandat 817.007 kb on + strandat 817.023 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Ammonium chloride (N); ShewMM media; shaking
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814,273 + -0.4
814,346 + EX31_RS20825 0.17 -0.8
814,346 + EX31_RS20825 0.17 -0.3
814,346 + EX31_RS20825 0.17 -0.6
814,346 + EX31_RS20825 0.17 +0.2
814,346 + EX31_RS20825 0.17 +0.6
814,346 + EX31_RS20825 0.17 -0.7
814,347 - EX31_RS20825 0.17 +2.2
814,347 - EX31_RS20825 0.17 +1.2
814,347 - EX31_RS20825 0.17 +0.8
814,386 + EX31_RS20825 0.21 +0.4
814,433 - EX31_RS20825 0.26 +0.6
814,509 + EX31_RS20825 0.33 +1.2
814,509 + EX31_RS20825 0.33 +0.5
814,509 + EX31_RS20825 0.33 +0.5
814,510 - EX31_RS20825 0.34 -0.8
814,510 - EX31_RS20825 0.34 +1.1
814,520 - EX31_RS20825 0.35 +1.3
814,531 + EX31_RS20825 0.36 -0.5
814,531 + EX31_RS20825 0.36 -1.4
814,532 - EX31_RS20825 0.36 -0.3
814,532 - EX31_RS20825 0.36 -0.4
814,532 - EX31_RS20825 0.36 +1.5
814,544 + EX31_RS20825 0.37 -0.0
814,608 + EX31_RS20825 0.43 +0.0
814,609 - EX31_RS20825 0.44 +0.8
814,624 + EX31_RS20825 0.45 +0.1
814,624 + EX31_RS20825 0.45 -0.2
814,681 - EX31_RS20825 0.51 +0.9
814,681 - EX31_RS20825 0.51 -0.6
814,681 - EX31_RS20825 0.51 +0.6
814,681 - EX31_RS20825 0.51 -0.5
814,799 - EX31_RS20825 0.63 -1.5
814,853 + EX31_RS20825 0.68 +1.2
815,132 + +1.4
815,132 + -1.7
815,133 - -0.5
815,169 - +0.1
815,204 - +0.3
815,269 + +1.8
815,270 - +3.2
815,270 - +0.9
815,270 - -0.4
815,272 + -0.6
815,272 + -1.4
815,273 - -0.1
815,278 + +0.7
815,278 + -1.3
815,337 + EX31_RS20830 0.15 -0.2
815,338 - EX31_RS20830 0.15 -0.0
815,339 + EX31_RS20830 0.15 -0.5
815,339 + EX31_RS20830 0.15 +0.6
815,339 + EX31_RS20830 0.15 -0.1
815,339 + EX31_RS20830 0.15 +0.7
815,339 + EX31_RS20830 0.15 -0.6
815,340 - EX31_RS20830 0.15 -0.1
815,340 - EX31_RS20830 0.15 -0.1
815,340 - EX31_RS20830 0.15 +0.3
815,340 - EX31_RS20830 0.15 -0.6
815,340 - EX31_RS20830 0.15 -1.0
815,340 - EX31_RS20830 0.15 +0.2
815,340 - EX31_RS20830 0.15 -1.0
815,340 - EX31_RS20830 0.15 +0.9
815,342 - EX31_RS20830 0.16 +0.1
815,342 - EX31_RS20830 0.16 +1.5
815,342 - EX31_RS20830 0.16 +1.6
815,342 - EX31_RS20830 0.16 -0.9
815,342 - EX31_RS20830 0.16 -0.3
815,342 - EX31_RS20830 0.16 +0.1
815,349 + EX31_RS20830 0.16 +1.8
815,364 + EX31_RS20830 0.18 +0.4
815,364 + EX31_RS20830 0.18 +0.7
815,364 + EX31_RS20830 0.18 -1.1
815,365 - EX31_RS20830 0.18 +0.1
815,365 - EX31_RS20830 0.18 +1.4
815,366 + EX31_RS20830 0.18 +1.1
815,367 - EX31_RS20830 0.18 -0.7
815,367 - EX31_RS20830 0.18 -0.6
815,367 - EX31_RS20830 0.18 -0.4
815,367 - EX31_RS20830 0.18 +0.6
815,367 - EX31_RS20830 0.18 +1.1
815,367 - EX31_RS20830 0.18 +0.8
815,389 - EX31_RS20830 0.21 +0.7
815,421 - EX31_RS20830 0.24 +0.1
815,421 - EX31_RS20830 0.24 +0.9
815,514 - EX31_RS20830 0.35 +0.6
815,536 - EX31_RS20830 0.37 -1.0
815,575 + EX31_RS20830 0.42 +0.1
815,575 + EX31_RS20830 0.42 -0.2
815,576 - EX31_RS20830 0.42 +0.1
815,691 - EX31_RS20830 0.55 -0.5
815,691 - EX31_RS20830 0.55 +0.6
815,727 - EX31_RS20830 0.59 -0.1
815,802 + EX31_RS20830 0.67 +0.0
815,810 + EX31_RS20830 0.68 -0.4
815,810 + EX31_RS20830 0.68 +0.4
815,811 - EX31_RS20830 0.68 -0.6
815,811 - EX31_RS20830 0.68 -1.1
815,895 - EX31_RS20830 0.78 +0.9
815,895 - EX31_RS20830 0.78 +0.2
816,052 - +1.8
816,127 + +0.4
816,128 - +0.1
816,128 - +0.4
816,190 + +1.9
816,203 - +0.2
816,217 + +0.3
816,217 + -1.1
816,218 - -0.8
816,218 - +0.5
816,229 - -0.0
816,282 + EX31_RS26100 0.29 +0.1
816,282 + EX31_RS26100 0.29 -1.1
816,283 - EX31_RS26100 0.31 -1.0
816,283 - EX31_RS26100 0.31 +0.1
816,287 - EX31_RS26100 0.36 -0.3
816,339 + +0.1
816,339 + +0.4
816,339 + +0.6
816,340 - +1.0
816,373 + +0.0
816,389 - -0.4
816,390 + -0.4
816,398 + +0.2
816,399 - +0.5
816,429 + -0.6
816,429 + -0.9
816,430 - +2.0
816,430 - +0.3
816,430 - +1.7
816,436 + -1.0
816,437 - -1.0
816,555 + EX31_RS20835 0.46 -0.9
816,555 + EX31_RS20835 0.46 +0.6
816,555 + EX31_RS20835 0.46 -0.2
816,556 - EX31_RS20835 0.46 -1.2
816,558 + EX31_RS20835 0.47 +0.2
816,558 + EX31_RS20835 0.47 +0.3
816,558 + EX31_RS20835 0.47 +0.4
816,559 - EX31_RS20835 0.47 +1.9
816,559 - EX31_RS20835 0.47 +0.6
816,559 - EX31_RS20835 0.47 +0.4
816,559 - EX31_RS20835 0.47 +2.2
816,559 - EX31_RS20835 0.47 +0.1
816,615 + EX31_RS20835 0.64 +1.2
816,615 + EX31_RS20835 0.64 -0.5
816,615 + EX31_RS20835 0.64 -0.5
816,615 + EX31_RS20835 0.64 +1.5
816,615 + EX31_RS20835 0.64 -0.1
816,616 - EX31_RS20835 0.65 +0.6
816,616 - EX31_RS20835 0.65 +0.6
816,616 - EX31_RS20835 0.65 +1.1
816,616 - EX31_RS20835 0.65 -0.5
816,616 - EX31_RS20835 0.65 +0.4
816,616 - EX31_RS20835 0.65 +0.2
816,616 - EX31_RS20835 0.65 +0.2
816,662 + EX31_RS20835 0.79 +0.6
816,662 + EX31_RS20835 0.79 +0.8
816,662 + EX31_RS20835 0.79 -1.0
816,663 - EX31_RS20835 0.79 -1.1
816,680 + EX31_RS20835 0.84 +0.5
816,680 + EX31_RS20835 0.84 -0.4
816,729 + -0.4
816,748 + -0.7
816,748 + +0.3
816,750 + +0.1
816,750 + +0.6
816,750 + -1.0
816,750 + +1.9
816,750 + +1.4
816,750 + +0.1
816,751 - -0.3
816,751 - -1.3
816,751 - -0.8
816,755 + -0.3
816,755 + -0.5
816,755 + +1.4
816,755 + -0.8
816,756 - -0.1
816,758 + -0.3
816,764 + -0.6
816,784 + +0.1
816,784 + +0.6
816,784 + -1.6
816,784 + +0.6
816,785 - +0.5
816,785 - +1.8
816,911 - EX31_RS20840 0.64 +2.2
816,911 - EX31_RS20840 0.64 +0.5
816,914 + EX31_RS20840 0.66 +1.2
816,915 - EX31_RS20840 0.66 -0.4
816,993 + -0.5
816,994 - +0.1
816,995 + +0.7
817,000 + +0.4
817,001 - -0.1
817,007 + -0.2
817,007 + +1.0
817,023 + +0.6

Or see this region's nucleotide sequence