Strain Fitness in Rahnella sp. WP5 around EX31_RS19800

Experiment: Ammonium chloride (N); ShewMM media; shaking

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX31_RS19790 and EX31_RS19795 are separated by 64 nucleotidesEX31_RS19795 and EX31_RS19800 are separated by 250 nucleotidesEX31_RS19800 and EX31_RS19805 are separated by 42 nucleotides EX31_RS19790: EX31_RS19790 - DUF4225 domain-containing protein, at 589,485 to 590,339 _RS19790 EX31_RS19795: EX31_RS19795 - hypothetical protein, at 590,404 to 590,736 _RS19795 EX31_RS19800: EX31_RS19800 - N-acetyltransferase, at 590,987 to 591,514 _RS19800 EX31_RS19805: EX31_RS19805 - MFS transporter, at 591,557 to 593,095 _RS19805 Position (kb) 590 591 592Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 590.022 kb on - strand, within EX31_RS19790at 590.028 kb on + strand, within EX31_RS19790at 590.031 kb on - strand, within EX31_RS19790at 590.107 kb on - strand, within EX31_RS19790at 590.123 kb on - strand, within EX31_RS19790at 590.136 kb on + strand, within EX31_RS19790at 590.139 kb on - strand, within EX31_RS19790at 590.187 kb on + strand, within EX31_RS19790at 590.188 kb on - strand, within EX31_RS19790at 590.190 kb on - strand, within EX31_RS19790at 590.194 kb on - strand, within EX31_RS19790at 590.251 kb on + strand, within EX31_RS19790at 590.565 kb on + strand, within EX31_RS19795at 590.642 kb on - strand, within EX31_RS19795at 590.883 kb on + strandat 590.884 kb on - strandat 590.885 kb on + strandat 590.899 kb on - strandat 590.903 kb on - strandat 590.904 kb on + strandat 590.950 kb on + strandat 590.951 kb on - strandat 591.016 kb on + strandat 591.016 kb on + strandat 591.017 kb on - strandat 591.038 kb on + strandat 591.124 kb on + strand, within EX31_RS19800at 591.179 kb on + strand, within EX31_RS19800at 591.185 kb on + strand, within EX31_RS19800at 591.185 kb on + strand, within EX31_RS19800at 591.185 kb on + strand, within EX31_RS19800at 591.210 kb on - strand, within EX31_RS19800at 591.238 kb on + strand, within EX31_RS19800at 591.238 kb on + strand, within EX31_RS19800at 591.238 kb on + strand, within EX31_RS19800at 591.238 kb on + strand, within EX31_RS19800at 591.238 kb on + strand, within EX31_RS19800at 591.238 kb on + strand, within EX31_RS19800at 591.239 kb on - strand, within EX31_RS19800at 591.242 kb on + strand, within EX31_RS19800at 591.242 kb on + strand, within EX31_RS19800at 591.242 kb on + strand, within EX31_RS19800at 591.242 kb on + strand, within EX31_RS19800at 591.242 kb on + strand, within EX31_RS19800at 591.242 kb on + strand, within EX31_RS19800at 591.243 kb on - strand, within EX31_RS19800at 591.245 kb on - strand, within EX31_RS19800at 591.245 kb on - strand, within EX31_RS19800at 591.362 kb on - strand, within EX31_RS19800at 591.378 kb on + strand, within EX31_RS19800at 591.378 kb on + strand, within EX31_RS19800at 591.378 kb on + strand, within EX31_RS19800at 591.379 kb on - strand, within EX31_RS19800at 591.379 kb on - strand, within EX31_RS19800at 591.379 kb on - strand, within EX31_RS19800at 591.419 kb on - strand, within EX31_RS19800at 591.431 kb on - strand, within EX31_RS19800at 591.431 kb on - strand, within EX31_RS19800at 591.460 kb on + strand, within EX31_RS19800at 591.460 kb on + strand, within EX31_RS19800at 591.460 kb on + strand, within EX31_RS19800at 591.461 kb on - strand, within EX31_RS19800at 591.523 kb on - strandat 591.590 kb on - strandat 591.590 kb on - strandat 591.622 kb on - strandat 591.622 kb on - strandat 591.622 kb on - strandat 591.622 kb on - strandat 591.643 kb on + strandat 591.644 kb on - strandat 591.644 kb on - strandat 591.652 kb on + strandat 591.652 kb on + strandat 591.652 kb on + strandat 591.652 kb on + strandat 591.652 kb on + strandat 591.652 kb on + strandat 591.653 kb on - strandat 591.653 kb on - strandat 591.653 kb on - strandat 591.653 kb on - strandat 591.653 kb on - strandat 591.653 kb on - strandat 591.653 kb on - strandat 591.653 kb on - strandat 591.725 kb on - strand, within EX31_RS19805at 591.725 kb on - strand, within EX31_RS19805at 591.725 kb on - strand, within EX31_RS19805at 591.762 kb on + strand, within EX31_RS19805at 591.762 kb on + strand, within EX31_RS19805at 591.762 kb on + strand, within EX31_RS19805at 591.763 kb on - strand, within EX31_RS19805at 591.763 kb on - strand, within EX31_RS19805at 591.763 kb on - strand, within EX31_RS19805at 591.780 kb on - strand, within EX31_RS19805at 591.822 kb on - strand, within EX31_RS19805at 591.876 kb on - strand, within EX31_RS19805at 591.923 kb on - strand, within EX31_RS19805at 592.004 kb on - strand, within EX31_RS19805at 592.016 kb on - strand, within EX31_RS19805at 592.017 kb on + strand, within EX31_RS19805at 592.017 kb on + strand, within EX31_RS19805at 592.017 kb on + strand, within EX31_RS19805at 592.099 kb on - strand, within EX31_RS19805at 592.131 kb on - strand, within EX31_RS19805at 592.132 kb on + strand, within EX31_RS19805at 592.195 kb on + strand, within EX31_RS19805at 592.195 kb on + strand, within EX31_RS19805at 592.238 kb on + strand, within EX31_RS19805at 592.238 kb on + strand, within EX31_RS19805at 592.239 kb on - strand, within EX31_RS19805at 592.239 kb on - strand, within EX31_RS19805at 592.287 kb on + strand, within EX31_RS19805at 592.288 kb on - strand, within EX31_RS19805at 592.291 kb on - strand, within EX31_RS19805at 592.310 kb on + strand, within EX31_RS19805at 592.339 kb on - strand, within EX31_RS19805at 592.339 kb on - strand, within EX31_RS19805at 592.345 kb on + strand, within EX31_RS19805at 592.348 kb on + strand, within EX31_RS19805at 592.349 kb on - strand, within EX31_RS19805at 592.349 kb on - strand, within EX31_RS19805at 592.372 kb on + strand, within EX31_RS19805at 592.486 kb on + strand, within EX31_RS19805at 592.486 kb on + strand, within EX31_RS19805at 592.486 kb on + strand, within EX31_RS19805at 592.514 kb on - strand, within EX31_RS19805

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Per-strain Table

Position Strand Gene LocusTag Fraction Ammonium chloride (N); ShewMM media; shaking
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590,022 - EX31_RS19790 0.63 +0.5
590,028 + EX31_RS19790 0.64 +0.9
590,031 - EX31_RS19790 0.64 -1.2
590,107 - EX31_RS19790 0.73 +1.9
590,123 - EX31_RS19790 0.75 -1.5
590,136 + EX31_RS19790 0.76 -0.8
590,139 - EX31_RS19790 0.76 +0.8
590,187 + EX31_RS19790 0.82 +2.1
590,188 - EX31_RS19790 0.82 +1.5
590,190 - EX31_RS19790 0.82 -0.9
590,194 - EX31_RS19790 0.83 -1.5
590,251 + EX31_RS19790 0.90 -0.5
590,565 + EX31_RS19795 0.48 +1.1
590,642 - EX31_RS19795 0.71 +1.3
590,883 + -0.5
590,884 - +1.0
590,885 + +0.8
590,899 - +1.1
590,903 - +1.1
590,904 + +0.5
590,950 + -0.4
590,951 - +0.6
591,016 + -0.3
591,016 + +0.6
591,017 - -1.3
591,038 + +0.9
591,124 + EX31_RS19800 0.26 -0.1
591,179 + EX31_RS19800 0.36 -0.5
591,185 + EX31_RS19800 0.38 -1.7
591,185 + EX31_RS19800 0.38 -0.0
591,185 + EX31_RS19800 0.38 +1.1
591,210 - EX31_RS19800 0.42 +0.3
591,238 + EX31_RS19800 0.48 +1.1
591,238 + EX31_RS19800 0.48 +0.9
591,238 + EX31_RS19800 0.48 +1.5
591,238 + EX31_RS19800 0.48 -0.3
591,238 + EX31_RS19800 0.48 +0.2
591,238 + EX31_RS19800 0.48 -0.1
591,239 - EX31_RS19800 0.48 +0.1
591,242 + EX31_RS19800 0.48 +1.5
591,242 + EX31_RS19800 0.48 -0.2
591,242 + EX31_RS19800 0.48 -0.0
591,242 + EX31_RS19800 0.48 +0.4
591,242 + EX31_RS19800 0.48 -1.6
591,242 + EX31_RS19800 0.48 -1.3
591,243 - EX31_RS19800 0.48 +0.9
591,245 - EX31_RS19800 0.49 -0.2
591,245 - EX31_RS19800 0.49 -0.7
591,362 - EX31_RS19800 0.71 +1.5
591,378 + EX31_RS19800 0.74 +0.1
591,378 + EX31_RS19800 0.74 -0.3
591,378 + EX31_RS19800 0.74 -1.5
591,379 - EX31_RS19800 0.74 -0.3
591,379 - EX31_RS19800 0.74 +1.3
591,379 - EX31_RS19800 0.74 +0.4
591,419 - EX31_RS19800 0.82 +1.4
591,431 - EX31_RS19800 0.84 +0.7
591,431 - EX31_RS19800 0.84 +1.9
591,460 + EX31_RS19800 0.90 +0.3
591,460 + EX31_RS19800 0.90 -0.1
591,460 + EX31_RS19800 0.90 +1.8
591,461 - EX31_RS19800 0.90 +1.1
591,523 - +0.5
591,590 - +0.4
591,590 - +0.1
591,622 - +0.5
591,622 - +0.1
591,622 - -0.4
591,622 - +0.4
591,643 + +0.3
591,644 - -0.7
591,644 - +1.2
591,652 + +1.1
591,652 + -0.5
591,652 + +0.2
591,652 + -0.2
591,652 + +1.1
591,652 + -0.1
591,653 - +0.2
591,653 - -2.9
591,653 - -1.1
591,653 - -0.4
591,653 - +0.2
591,653 - +0.7
591,653 - +0.4
591,653 - -0.2
591,725 - EX31_RS19805 0.11 +0.2
591,725 - EX31_RS19805 0.11 -1.4
591,725 - EX31_RS19805 0.11 +1.9
591,762 + EX31_RS19805 0.13 -0.6
591,762 + EX31_RS19805 0.13 -0.9
591,762 + EX31_RS19805 0.13 +0.0
591,763 - EX31_RS19805 0.13 -0.2
591,763 - EX31_RS19805 0.13 -0.3
591,763 - EX31_RS19805 0.13 +1.2
591,780 - EX31_RS19805 0.14 -0.5
591,822 - EX31_RS19805 0.17 +1.0
591,876 - EX31_RS19805 0.21 +0.1
591,923 - EX31_RS19805 0.24 +0.8
592,004 - EX31_RS19805 0.29 -0.3
592,016 - EX31_RS19805 0.30 +0.8
592,017 + EX31_RS19805 0.30 +1.0
592,017 + EX31_RS19805 0.30 +0.2
592,017 + EX31_RS19805 0.30 +0.5
592,099 - EX31_RS19805 0.35 -1.1
592,131 - EX31_RS19805 0.37 -0.1
592,132 + EX31_RS19805 0.37 -0.1
592,195 + EX31_RS19805 0.41 +0.7
592,195 + EX31_RS19805 0.41 +1.7
592,238 + EX31_RS19805 0.44 +0.2
592,238 + EX31_RS19805 0.44 +0.1
592,239 - EX31_RS19805 0.44 -0.1
592,239 - EX31_RS19805 0.44 -0.1
592,287 + EX31_RS19805 0.47 +0.2
592,288 - EX31_RS19805 0.47 +0.1
592,291 - EX31_RS19805 0.48 +1.4
592,310 + EX31_RS19805 0.49 -0.8
592,339 - EX31_RS19805 0.51 +0.2
592,339 - EX31_RS19805 0.51 +0.4
592,345 + EX31_RS19805 0.51 -1.3
592,348 + EX31_RS19805 0.51 -1.9
592,349 - EX31_RS19805 0.51 -0.1
592,349 - EX31_RS19805 0.51 +1.1
592,372 + EX31_RS19805 0.53 +0.5
592,486 + EX31_RS19805 0.60 +1.7
592,486 + EX31_RS19805 0.60 +0.7
592,486 + EX31_RS19805 0.60 -0.0
592,514 - EX31_RS19805 0.62 +1.2

Or see this region's nucleotide sequence