Strain Fitness in Rahnella sp. WP5 around EX31_RS17060

Experiment: Ammonium chloride (N); ShewMM media; shaking

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ammonium chloride (N); ShewMM media; shaking
1,555	+		EX31_RS17050	0.47	+1.4
1,556	-		EX31_RS17050	0.47	-0.6
1,556	-		EX31_RS17050	0.47	+0.4
1,556	-		EX31_RS17050	0.47	-1.4
1,556	-		EX31_RS17050	0.47	-0.1
1,556	-		EX31_RS17050	0.47	+0.6
1,556	-		EX31_RS17050	0.47	-0.5
1,556	-		EX31_RS17050	0.47	+1.5
1,559	+		EX31_RS17050	0.48	+1.4
1,560	-		EX31_RS17050	0.48	+1.9
1,579	+		EX31_RS17050	0.52	-1.1
1,580	-		EX31_RS17050	0.53	+1.1
1,588	-		EX31_RS17050	0.54	-0.5
1,595	-		EX31_RS17050	0.56	-2.3
1,595	-		EX31_RS17050	0.56	+0.1
1,644	-		EX31_RS17050	0.66	-1.9
1,709	+		EX31_RS17050	0.80	+0.8
1,709	+		EX31_RS17050	0.80	+0.8
1,710	-		EX31_RS17050	0.80	+0.4
1,710	-		EX31_RS17050	0.80	+1.8
1,710	-		EX31_RS17050	0.80	+0.6
1,816	+				-1.0
1,816	+				+0.8
1,816	+				+0.1
1,817	-				+0.3
1,817	-				+0.8
1,817	-				-0.6
1,817	-				-0.3
1,817	-				+1.1
1,817	-				+0.5
1,817	-				-1.3
1,817	-				+1.1
1,817	-				-0.6
1,823	+				+0.2
1,824	-				+1.9
1,857	-				+1.2
1,857	-				-0.4
1,857	-				+0.8
1,866	+				+1.1
1,866	+				-1.3
1,866	+				-1.2
1,867	-				+0.0
1,867	-				-1.7
1,907	+		EX31_RS17055	0.13	+0.4
1,907	+		EX31_RS17055	0.13	+1.2
1,907	+		EX31_RS17055	0.13	+0.2
1,907	+		EX31_RS17055	0.13	+2.4
1,907	+		EX31_RS17055	0.13	+2.4
1,908	-		EX31_RS17055	0.13	+0.5
1,908	-		EX31_RS17055	0.13	+0.1
1,908	-		EX31_RS17055	0.13	+0.8
1,925	+		EX31_RS17055	0.15	+0.4
1,925	+		EX31_RS17055	0.15	-0.2
1,925	+		EX31_RS17055	0.15	+1.8
1,925	+		EX31_RS17055	0.15	+1.4
1,925	+		EX31_RS17055	0.15	+1.2
1,926	-		EX31_RS17055	0.15	+0.6
1,926	-		EX31_RS17055	0.15	-0.6
1,926	-		EX31_RS17055	0.15	+0.4
1,928	+		EX31_RS17055	0.16	-0.5
1,928	+		EX31_RS17055	0.16	+1.0
1,928	+		EX31_RS17055	0.16	+1.4
1,928	+		EX31_RS17055	0.16	-0.4
1,928	+		EX31_RS17055	0.16	-1.3
1,929	-		EX31_RS17055	0.16	+0.0
1,929	-		EX31_RS17055	0.16	-0.1
1,929	-		EX31_RS17055	0.16	+2.2
1,929	-		EX31_RS17055	0.16	-0.0
1,929	-		EX31_RS17055	0.16	-1.0
2,019	-		EX31_RS17055	0.28	+0.8
2,051	+		EX31_RS17055	0.33	+1.4
2,051	+		EX31_RS17055	0.33	-1.3
2,051	+		EX31_RS17055	0.33	-0.9
2,051	+		EX31_RS17055	0.33	+1.3
2,051	+		EX31_RS17055	0.33	+0.4
2,051	+		EX31_RS17055	0.33	-0.3
2,051	+		EX31_RS17055	0.33	+1.4
2,051	+		EX31_RS17055	0.33	+0.3
2,051	+		EX31_RS17055	0.33	-0.1
2,051	+		EX31_RS17055	0.33	-1.3
2,051	+		EX31_RS17055	0.33	-0.2
2,051	+		EX31_RS17055	0.33	+2.8
2,051	+		EX31_RS17055	0.33	+0.5
2,051	+		EX31_RS17055	0.33	-1.3
2,051	+		EX31_RS17055	0.33	-1.0
2,052	-		EX31_RS17055	0.33	-0.7
2,052	-		EX31_RS17055	0.33	-1.9
2,052	-		EX31_RS17055	0.33	+0.8
2,052	-		EX31_RS17055	0.33	+1.4
2,052	-		EX31_RS17055	0.33	-1.7
2,052	-		EX31_RS17055	0.33	-0.2
2,052	-		EX31_RS17055	0.33	+0.3
2,052	-		EX31_RS17055	0.33	-0.2
2,052	-		EX31_RS17055	0.33	+1.2
2,052	-		EX31_RS17055	0.33	-0.5
2,055	+		EX31_RS17055	0.33	-1.0
2,055	+		EX31_RS17055	0.33	+0.2
2,055	+		EX31_RS17055	0.33	-0.2
2,055	+		EX31_RS17055	0.33	+1.6
2,056	-		EX31_RS17055	0.33	-0.3
2,056	-		EX31_RS17055	0.33	+1.2
2,056	-		EX31_RS17055	0.33	-1.2
2,056	-		EX31_RS17055	0.33	-0.8
2,056	-		EX31_RS17055	0.33	+0.0
2,056	-		EX31_RS17055	0.33	+0.6
2,168	-		EX31_RS17055	0.49	+0.8
2,168	-		EX31_RS17055	0.49	+0.8
2,168	-		EX31_RS17055	0.49	+0.0
2,168	-		EX31_RS17055	0.49	+1.4
2,186	+		EX31_RS17055	0.52	+0.8
2,187	-		EX31_RS17055	0.52	-0.4
2,187	-		EX31_RS17055	0.52	+0.4
2,187	-		EX31_RS17055	0.52	+1.3
2,246	+		EX31_RS17055	0.60	-0.4
2,246	+		EX31_RS17055	0.60	+1.7
2,310	+		EX31_RS17055	0.69	-0.2
2,310	+		EX31_RS17055	0.69	+0.9
2,310	+		EX31_RS17055	0.69	+1.6
2,311	-		EX31_RS17055	0.69	-1.6
2,311	-		EX31_RS17055	0.69	-0.4
2,311	-		EX31_RS17055	0.69	-0.6
2,311	-		EX31_RS17055	0.69	+0.4
2,311	-		EX31_RS17055	0.69	+0.9
2,311	-		EX31_RS17055	0.69	+0.0
2,348	+		EX31_RS17055	0.74	+0.6
2,348	+		EX31_RS17055	0.74	+0.5
2,388	-		EX31_RS17055	0.80	-0.1
2,411	+		EX31_RS17055	0.83	-1.1
2,411	+		EX31_RS17055	0.83	-0.4
2,420	+		EX31_RS17055	0.84	+0.6
2,420	+		EX31_RS17055	0.84	+0.0
2,420	+		EX31_RS17055	0.84	+0.7
2,421	-		EX31_RS17055	0.84	-0.2
2,421	-		EX31_RS17055	0.84	+0.5
2,421	-		EX31_RS17055	0.84	-1.0
2,421	-		EX31_RS17055	0.84	+0.2
2,421	-		EX31_RS17055	0.84	+0.5
2,421	-		EX31_RS17055	0.84	-0.2
2,421	-		EX31_RS17055	0.84	+0.8
2,421	-		EX31_RS17055	0.84	+0.8
2,537	+				-0.9
2,537	+				+1.2
2,548	+				-0.2
2,548	+				+0.5
2,548	+				+0.8
2,549	-				-0.4
2,549	-				+0.5
2,572	+				+1.4
2,572	+				+0.2
2,572	+				-0.2
2,572	+				+2.0
2,573	-				+0.4
2,573	-				+0.0
2,573	-				+0.4
2,573	-				+1.6
2,573	-				+0.2
2,573	-				+0.0
2,573	-				-0.2
2,580	-				+0.9
2,683	-		EX31_RS17060	0.13	-1.4
2,779	-		EX31_RS17060	0.22	-0.0
2,779	-		EX31_RS17060	0.22	+0.1
2,987	+		EX31_RS17060	0.41	-0.1
2,999	-		EX31_RS17060	0.42	+0.9
2,999	-		EX31_RS17060	0.42	-0.3
3,047	-		EX31_RS17060	0.46	+0.0
3,057	+		EX31_RS17060	0.47	-0.8
3,192	+		EX31_RS17060	0.59	+1.4
3,192	+		EX31_RS17060	0.59	+0.9
3,192	+		EX31_RS17060	0.59	-0.6
3,192	+		EX31_RS17060	0.59	+0.5
3,192	+		EX31_RS17060	0.59	+1.4
3,192	+		EX31_RS17060	0.59	+0.4
3,192	+		EX31_RS17060	0.59	-0.6
3,193	-		EX31_RS17060	0.59	-0.4
3,193	-		EX31_RS17060	0.59	+1.8
3,193	-		EX31_RS17060	0.59	+1.8
3,193	-		EX31_RS17060	0.59	-1.4
3,193	-		EX31_RS17060	0.59	-1.1
3,193	-		EX31_RS17060	0.59	-0.3
3,193	-		EX31_RS17060	0.59	+0.4
3,193	-		EX31_RS17060	0.59	-1.0
3,193	-		EX31_RS17060	0.59	-0.9
3,196	-		EX31_RS17060	0.59	+1.7
3,196	-		EX31_RS17060	0.59	+1.6
3,196	-		EX31_RS17060	0.59	-0.7
3,196	-		EX31_RS17060	0.59	+1.5
3,218	-		EX31_RS17060	0.61	+1.4
3,218	-		EX31_RS17060	0.61	+0.9
3,299	+		EX31_RS17060	0.69	+0.4
3,300	-		EX31_RS17060	0.69	-0.5
3,300	-		EX31_RS17060	0.69	-0.1
3,316	+		EX31_RS17060	0.70	+0.0
3,316	+		EX31_RS17060	0.70	+0.4
3,316	+		EX31_RS17060	0.70	+2.4
3,316	+		EX31_RS17060	0.70	-0.9
3,316	+		EX31_RS17060	0.70	+0.5
3,377	+		EX31_RS17060	0.76	-0.0
3,378	-		EX31_RS17060	0.76	+0.4
3,378	-		EX31_RS17060	0.76	+0.0
3,378	-		EX31_RS17060	0.76	-0.4
3,378	-		EX31_RS17060	0.76	+0.8
3,384	-		EX31_RS17060	0.76	-1.3
3,384	-		EX31_RS17060	0.76	+0.4
3,384	-		EX31_RS17060	0.76	+0.0
3,384	-		EX31_RS17060	0.76	+0.1
3,384	-		EX31_RS17060	0.76	-1.0
3,384	-		EX31_RS17060	0.76	-0.1
3,403	+		EX31_RS17060	0.78	+1.1
3,456	+		EX31_RS17060	0.83	+0.0
3,457	-		EX31_RS17060	0.83	+0.7
3,457	-		EX31_RS17060	0.83	-0.2
3,457	-		EX31_RS17060	0.83	-0.2
3,478	-		EX31_RS17060	0.85	+0.3
3,478	-		EX31_RS17060	0.85	-0.0
3,478	-		EX31_RS17060	0.85	-1.3
3,479	+		EX31_RS17060	0.85	+0.2
3,479	+		EX31_RS17060	0.85	-0.1
3,479	+		EX31_RS17060	0.85	+0.4
3,479	+		EX31_RS17060	0.85	+1.3
3,479	+		EX31_RS17060	0.85	+0.6
3,480	-		EX31_RS17060	0.85	-1.1
3,480	-		EX31_RS17060	0.85	-2.6
3,480	-		EX31_RS17060	0.85	+0.8
3,480	-		EX31_RS17060	0.85	+0.4
3,480	-		EX31_RS17060	0.85	-0.5
3,480	-		EX31_RS17060	0.85	-0.2
3,537	-				-0.1
3,571	+				-0.1
3,572	-				+0.4
3,572	-				+1.1
3,702	+				-0.5
3,703	-				+0.6
3,703	-				+1.8
3,703	-				+1.6
3,720	+				+1.6
3,721	-				-0.3
3,733	+				+1.1
3,733	+				+1.4
3,733	+				-1.1
3,733	+				+0.2
3,733	+				+0.5
3,733	+				+0.0
3,734	-				+1.4
3,734	-				+0.8
3,734	-				-1.3
3,904	+		EX31_RS17065	0.16	+0.8
3,904	+		EX31_RS17065	0.16	-2.2
3,904	+		EX31_RS17065	0.16	-1.9
3,905	-		EX31_RS17065	0.16	+0.9
3,921	+		EX31_RS17065	0.18	-0.3
3,921	+		EX31_RS17065	0.18	+0.8
3,922	-		EX31_RS17065	0.18	+0.4
3,922	-		EX31_RS17065	0.18	+2.1
3,922	-		EX31_RS17065	0.18	-1.1
3,922	-		EX31_RS17065	0.18	+0.2
3,957	-		EX31_RS17065	0.20	-0.1
3,957	-		EX31_RS17065	0.20	+0.1
3,957	-		EX31_RS17065	0.20	-1.2
3,957	-		EX31_RS17065	0.20	+0.6
3,968	+		EX31_RS17065	0.21	+1.8
4,001	-		EX31_RS17065	0.24	+0.4
4,088	+		EX31_RS17065	0.30	+0.0
4,088	+		EX31_RS17065	0.30	-0.2
4,088	+		EX31_RS17065	0.30	-0.2
4,088	+		EX31_RS17065	0.30	-0.1
4,088	+		EX31_RS17065	0.30	-0.3
4,088	+		EX31_RS17065	0.30	+0.4
4,088	+		EX31_RS17065	0.30	-0.6
4,089	-		EX31_RS17065	0.30	-0.2
4,089	-		EX31_RS17065	0.30	+1.0
4,089	-		EX31_RS17065	0.30	-1.4
4,089	-		EX31_RS17065	0.30	+0.2
4,089	-		EX31_RS17065	0.30	-1.3
4,110	-		EX31_RS17065	0.32	-0.8
4,179	+		EX31_RS17065	0.37	+1.0
4,179	+		EX31_RS17065	0.37	-0.3
4,180	-		EX31_RS17065	0.37	+1.0
4,180	-		EX31_RS17065	0.37	-1.4
4,180	-		EX31_RS17065	0.37	+0.8
4,191	+		EX31_RS17065	0.38	-0.4
4,203	+		EX31_RS17065	0.39	+0.4
4,203	+		EX31_RS17065	0.39	+2.4
4,204	-		EX31_RS17065	0.39	+1.0
4,204	-		EX31_RS17065	0.39	-0.2
4,204	-		EX31_RS17065	0.39	-0.3
4,204	-		EX31_RS17065	0.39	+0.4
4,204	-		EX31_RS17065	0.39	+0.7
4,376	+		EX31_RS17065	0.52	-0.8
4,376	+		EX31_RS17065	0.52	+0.5
4,458	-		EX31_RS17065	0.59	+0.9
4,543	-		EX31_RS17065	0.65	+1.5
4,549	+		EX31_RS17065	0.66	+1.8
4,549	+		EX31_RS17065	0.66	-0.2
4,550	-		EX31_RS17065	0.66	-0.3
4,550	-		EX31_RS17065	0.66	-0.6
4,550	-		EX31_RS17065	0.66	+0.6
4,550	-		EX31_RS17065	0.66	-0.7
4,550	-		EX31_RS17065	0.66	-0.8
4,550	-		EX31_RS17065	0.66	-0.9
4,573	-		EX31_RS17065	0.68	+0.8
4,573	-		EX31_RS17065	0.68	-0.2