Strain Fitness in Rahnella sp. WP5 around EX31_RS11625

Experiment: Ammonium chloride (N); ShewMM media; shaking

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntEX31_RS11615 and EX31_RS11620 are separated by 20 nucleotidesEX31_RS11620 and EX31_RS11625 overlap by 1 nucleotidesEX31_RS11625 and EX31_RS11630 are separated by 134 nucleotides EX31_RS11615: EX31_RS11615 - fumarylacetoacetate hydrolase family protein, at 264,004 to 264,693 _RS11615 EX31_RS11620: EX31_RS11620 - hypothetical protein, at 264,714 to 265,520 _RS11620 EX31_RS11625: EX31_RS11625 - hypothetical protein, at 265,520 to 265,717 _RS11625 EX31_RS11630: EX31_RS11630 - L-asparagine permease, at 265,852 to 267,333 _RS11630 Position (kb) 265 266Strain fitness (log2 ratio) -2 -1 0 1 2 3at 264.537 kb on - strand, within EX31_RS11615at 264.553 kb on + strand, within EX31_RS11615at 264.553 kb on + strand, within EX31_RS11615at 264.554 kb on - strand, within EX31_RS11615at 264.554 kb on - strand, within EX31_RS11615at 264.595 kb on + strand, within EX31_RS11615at 264.595 kb on + strand, within EX31_RS11615at 264.596 kb on - strand, within EX31_RS11615at 264.596 kb on - strand, within EX31_RS11615at 264.596 kb on - strand, within EX31_RS11615at 264.691 kb on + strandat 264.767 kb on + strandat 264.767 kb on + strandat 264.831 kb on + strand, within EX31_RS11620at 264.832 kb on - strand, within EX31_RS11620at 264.842 kb on + strand, within EX31_RS11620at 264.843 kb on - strand, within EX31_RS11620at 264.899 kb on - strand, within EX31_RS11620at 264.902 kb on - strand, within EX31_RS11620at 264.910 kb on + strand, within EX31_RS11620at 264.911 kb on - strand, within EX31_RS11620at 264.911 kb on - strand, within EX31_RS11620at 264.915 kb on - strand, within EX31_RS11620at 264.915 kb on - strand, within EX31_RS11620at 264.915 kb on - strand, within EX31_RS11620at 265.031 kb on - strand, within EX31_RS11620at 265.048 kb on - strand, within EX31_RS11620at 265.048 kb on - strand, within EX31_RS11620at 265.060 kb on - strand, within EX31_RS11620at 265.080 kb on - strand, within EX31_RS11620at 265.087 kb on + strand, within EX31_RS11620at 265.087 kb on + strand, within EX31_RS11620at 265.087 kb on + strand, within EX31_RS11620at 265.087 kb on + strand, within EX31_RS11620at 265.088 kb on - strand, within EX31_RS11620at 265.088 kb on - strand, within EX31_RS11620at 265.088 kb on - strand, within EX31_RS11620at 265.088 kb on - strand, within EX31_RS11620at 265.129 kb on + strand, within EX31_RS11620at 265.129 kb on + strand, within EX31_RS11620at 265.129 kb on + strand, within EX31_RS11620at 265.130 kb on - strand, within EX31_RS11620at 265.152 kb on - strand, within EX31_RS11620at 265.152 kb on - strand, within EX31_RS11620at 265.154 kb on + strand, within EX31_RS11620at 265.179 kb on - strand, within EX31_RS11620at 265.217 kb on + strand, within EX31_RS11620at 265.217 kb on + strand, within EX31_RS11620at 265.217 kb on + strand, within EX31_RS11620at 265.217 kb on + strand, within EX31_RS11620at 265.218 kb on - strand, within EX31_RS11620at 265.218 kb on - strand, within EX31_RS11620at 265.218 kb on - strand, within EX31_RS11620at 265.218 kb on - strand, within EX31_RS11620at 265.273 kb on + strand, within EX31_RS11620at 265.348 kb on + strand, within EX31_RS11620at 265.349 kb on - strand, within EX31_RS11620at 265.350 kb on + strand, within EX31_RS11620at 265.351 kb on - strand, within EX31_RS11620at 265.351 kb on - strand, within EX31_RS11620at 265.351 kb on - strand, within EX31_RS11620at 265.351 kb on - strand, within EX31_RS11620at 265.351 kb on - strand, within EX31_RS11620at 265.351 kb on - strand, within EX31_RS11620at 265.359 kb on + strand, within EX31_RS11620at 265.359 kb on + strand, within EX31_RS11620at 265.360 kb on - strand, within EX31_RS11620at 265.360 kb on - strand, within EX31_RS11620at 265.388 kb on + strand, within EX31_RS11620at 265.388 kb on + strand, within EX31_RS11620at 265.397 kb on - strand, within EX31_RS11620at 265.397 kb on - strand, within EX31_RS11620at 265.414 kb on + strand, within EX31_RS11620at 265.440 kb on - strandat 265.440 kb on - strandat 265.472 kb on + strandat 265.472 kb on + strandat 265.474 kb on + strandat 265.474 kb on + strandat 265.474 kb on + strandat 265.475 kb on - strandat 265.522 kb on - strandat 265.640 kb on - strand, within EX31_RS11625at 265.695 kb on - strand, within EX31_RS11625at 265.717 kb on + strandat 265.718 kb on - strandat 265.718 kb on - strandat 265.718 kb on - strandat 265.736 kb on - strandat 265.744 kb on - strandat 265.749 kb on + strandat 265.750 kb on - strandat 265.854 kb on - strandat 265.854 kb on - strandat 265.866 kb on + strandat 265.936 kb on + strandat 265.937 kb on - strandat 265.937 kb on - strandat 265.937 kb on - strandat 265.949 kb on - strandat 265.988 kb on + strandat 265.989 kb on - strandat 265.989 kb on - strandat 266.219 kb on + strand, within EX31_RS11630at 266.220 kb on - strand, within EX31_RS11630at 266.220 kb on - strand, within EX31_RS11630at 266.220 kb on - strand, within EX31_RS11630at 266.222 kb on + strand, within EX31_RS11630at 266.222 kb on + strand, within EX31_RS11630at 266.223 kb on - strand, within EX31_RS11630at 266.223 kb on - strand, within EX31_RS11630at 266.233 kb on + strand, within EX31_RS11630at 266.246 kb on + strand, within EX31_RS11630at 266.246 kb on + strand, within EX31_RS11630at 266.247 kb on - strand, within EX31_RS11630at 266.247 kb on - strand, within EX31_RS11630at 266.247 kb on - strand, within EX31_RS11630at 266.247 kb on - strand, within EX31_RS11630at 266.247 kb on - strand, within EX31_RS11630at 266.268 kb on + strand, within EX31_RS11630at 266.269 kb on - strand, within EX31_RS11630at 266.276 kb on + strand, within EX31_RS11630at 266.349 kb on + strand, within EX31_RS11630at 266.364 kb on - strand, within EX31_RS11630at 266.430 kb on - strand, within EX31_RS11630at 266.430 kb on - strand, within EX31_RS11630at 266.512 kb on + strand, within EX31_RS11630at 266.513 kb on - strand, within EX31_RS11630at 266.513 kb on - strand, within EX31_RS11630

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Ammonium chloride (N); ShewMM media; shaking
remove
264,537 - EX31_RS11615 0.77 +1.3
264,553 + EX31_RS11615 0.80 -0.1
264,553 + EX31_RS11615 0.80 +0.8
264,554 - EX31_RS11615 0.80 +0.6
264,554 - EX31_RS11615 0.80 -2.2
264,595 + EX31_RS11615 0.86 +0.6
264,595 + EX31_RS11615 0.86 +1.1
264,596 - EX31_RS11615 0.86 +0.3
264,596 - EX31_RS11615 0.86 +0.1
264,596 - EX31_RS11615 0.86 -1.4
264,691 + -0.8
264,767 + -2.5
264,767 + +0.1
264,831 + EX31_RS11620 0.14 +1.1
264,832 - EX31_RS11620 0.15 +0.5
264,842 + EX31_RS11620 0.16 +0.5
264,843 - EX31_RS11620 0.16 +0.9
264,899 - EX31_RS11620 0.23 +0.9
264,902 - EX31_RS11620 0.23 -2.0
264,910 + EX31_RS11620 0.24 +3.5
264,911 - EX31_RS11620 0.24 -0.3
264,911 - EX31_RS11620 0.24 +0.3
264,915 - EX31_RS11620 0.25 +0.6
264,915 - EX31_RS11620 0.25 -0.6
264,915 - EX31_RS11620 0.25 -0.7
265,031 - EX31_RS11620 0.39 +0.9
265,048 - EX31_RS11620 0.41 +1.3
265,048 - EX31_RS11620 0.41 +0.9
265,060 - EX31_RS11620 0.43 -0.7
265,080 - EX31_RS11620 0.45 +0.9
265,087 + EX31_RS11620 0.46 -0.2
265,087 + EX31_RS11620 0.46 +0.1
265,087 + EX31_RS11620 0.46 +1.2
265,087 + EX31_RS11620 0.46 +0.1
265,088 - EX31_RS11620 0.46 -0.6
265,088 - EX31_RS11620 0.46 -0.3
265,088 - EX31_RS11620 0.46 -0.9
265,088 - EX31_RS11620 0.46 -1.1
265,129 + EX31_RS11620 0.51 +1.4
265,129 + EX31_RS11620 0.51 -0.1
265,129 + EX31_RS11620 0.51 -0.4
265,130 - EX31_RS11620 0.52 -1.7
265,152 - EX31_RS11620 0.54 -0.4
265,152 - EX31_RS11620 0.54 -0.3
265,154 + EX31_RS11620 0.55 -0.2
265,179 - EX31_RS11620 0.58 -1.5
265,217 + EX31_RS11620 0.62 -0.5
265,217 + EX31_RS11620 0.62 +0.9
265,217 + EX31_RS11620 0.62 -1.7
265,217 + EX31_RS11620 0.62 -0.5
265,218 - EX31_RS11620 0.62 -1.4
265,218 - EX31_RS11620 0.62 -0.1
265,218 - EX31_RS11620 0.62 +1.2
265,218 - EX31_RS11620 0.62 +0.9
265,273 + EX31_RS11620 0.69 -0.7
265,348 + EX31_RS11620 0.79 +0.2
265,349 - EX31_RS11620 0.79 -0.1
265,350 + EX31_RS11620 0.79 -0.3
265,351 - EX31_RS11620 0.79 +0.3
265,351 - EX31_RS11620 0.79 -0.1
265,351 - EX31_RS11620 0.79 -0.5
265,351 - EX31_RS11620 0.79 +1.0
265,351 - EX31_RS11620 0.79 -0.0
265,351 - EX31_RS11620 0.79 -0.1
265,359 + EX31_RS11620 0.80 -0.4
265,359 + EX31_RS11620 0.80 -0.2
265,360 - EX31_RS11620 0.80 +1.5
265,360 - EX31_RS11620 0.80 +1.3
265,388 + EX31_RS11620 0.84 +0.1
265,388 + EX31_RS11620 0.84 -0.1
265,397 - EX31_RS11620 0.85 +0.3
265,397 - EX31_RS11620 0.85 +0.8
265,414 + EX31_RS11620 0.87 +0.7
265,440 - +0.9
265,440 - +1.0
265,472 + -0.7
265,472 + +3.5
265,474 + +0.4
265,474 + -0.1
265,474 + -1.4
265,475 - +1.5
265,522 - +2.4
265,640 - EX31_RS11625 0.61 +0.1
265,695 - EX31_RS11625 0.88 -1.2
265,717 + -0.5
265,718 - -0.1
265,718 - -0.5
265,718 - -0.1
265,736 - +1.4
265,744 - -0.2
265,749 + -1.1
265,750 - +0.3
265,854 - -0.3
265,854 - -1.4
265,866 + +1.3
265,936 + +1.0
265,937 - -0.3
265,937 - +1.1
265,937 - +0.9
265,949 - +0.7
265,988 + -0.4
265,989 - -0.6
265,989 - +0.1
266,219 + EX31_RS11630 0.25 -0.4
266,220 - EX31_RS11630 0.25 -1.7
266,220 - EX31_RS11630 0.25 -1.3
266,220 - EX31_RS11630 0.25 -0.1
266,222 + EX31_RS11630 0.25 -0.1
266,222 + EX31_RS11630 0.25 +0.5
266,223 - EX31_RS11630 0.25 +0.4
266,223 - EX31_RS11630 0.25 +0.2
266,233 + EX31_RS11630 0.26 +0.0
266,246 + EX31_RS11630 0.27 +2.7
266,246 + EX31_RS11630 0.27 -1.4
266,247 - EX31_RS11630 0.27 +0.3
266,247 - EX31_RS11630 0.27 -0.4
266,247 - EX31_RS11630 0.27 -0.9
266,247 - EX31_RS11630 0.27 -0.1
266,247 - EX31_RS11630 0.27 +0.5
266,268 + EX31_RS11630 0.28 +0.1
266,269 - EX31_RS11630 0.28 +0.4
266,276 + EX31_RS11630 0.29 +0.1
266,349 + EX31_RS11630 0.34 -2.0
266,364 - EX31_RS11630 0.35 -1.7
266,430 - EX31_RS11630 0.39 -0.2
266,430 - EX31_RS11630 0.39 +0.9
266,512 + EX31_RS11630 0.45 +0.6
266,513 - EX31_RS11630 0.45 +1.3
266,513 - EX31_RS11630 0.45 -1.0

Or see this region's nucleotide sequence