Strain Fitness in Rahnella sp. WP5 around EX31_RS09200

Experiment: Ammonium chloride (N); ShewMM media; shaking

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX31_RS09195 and EX31_RS09200 are separated by 303 nucleotidesEX31_RS09200 and EX31_RS09205 are separated by 132 nucleotides EX31_RS09195: EX31_RS09195 - gamma-glutamyltransferase family protein, at 36,040 to 37,647 _RS09195 EX31_RS09200: EX31_RS09200 - dihydrodipicolinate synthase family protein, at 37,951 to 38,866 _RS09200 EX31_RS09205: EX31_RS09205 - siderophore-iron reductase FhuF, at 38,999 to 39,763 _RS09205 Position (kb) 37 38 39Strain fitness (log2 ratio) -2 -1 0 1 2 3at 36.978 kb on + strand, within EX31_RS09195at 36.978 kb on + strand, within EX31_RS09195at 36.978 kb on + strand, within EX31_RS09195at 36.979 kb on - strand, within EX31_RS09195at 36.979 kb on - strand, within EX31_RS09195at 36.979 kb on - strand, within EX31_RS09195at 36.979 kb on - strand, within EX31_RS09195at 37.070 kb on - strand, within EX31_RS09195at 37.070 kb on - strand, within EX31_RS09195at 37.100 kb on - strand, within EX31_RS09195at 37.100 kb on - strand, within EX31_RS09195at 37.153 kb on + strand, within EX31_RS09195at 37.154 kb on - strand, within EX31_RS09195at 37.284 kb on + strand, within EX31_RS09195at 37.397 kb on - strand, within EX31_RS09195at 37.397 kb on - strand, within EX31_RS09195at 37.645 kb on + strandat 37.646 kb on - strandat 37.755 kb on + strandat 37.921 kb on - strandat 37.921 kb on - strandat 37.936 kb on - strandat 38.112 kb on + strand, within EX31_RS09200at 38.112 kb on + strand, within EX31_RS09200at 38.112 kb on + strand, within EX31_RS09200at 38.112 kb on + strand, within EX31_RS09200at 38.113 kb on - strand, within EX31_RS09200at 38.238 kb on + strand, within EX31_RS09200at 38.280 kb on - strand, within EX31_RS09200at 38.282 kb on + strand, within EX31_RS09200at 38.282 kb on + strand, within EX31_RS09200at 38.283 kb on - strand, within EX31_RS09200at 38.309 kb on + strand, within EX31_RS09200at 38.310 kb on - strand, within EX31_RS09200at 38.310 kb on - strand, within EX31_RS09200at 38.360 kb on + strand, within EX31_RS09200at 38.360 kb on + strand, within EX31_RS09200at 38.360 kb on + strand, within EX31_RS09200at 38.360 kb on + strand, within EX31_RS09200at 38.360 kb on + strand, within EX31_RS09200at 38.360 kb on + strand, within EX31_RS09200at 38.360 kb on + strand, within EX31_RS09200at 38.360 kb on + strand, within EX31_RS09200at 38.360 kb on + strand, within EX31_RS09200at 38.360 kb on + strand, within EX31_RS09200at 38.361 kb on - strand, within EX31_RS09200at 38.361 kb on - strand, within EX31_RS09200at 38.361 kb on - strand, within EX31_RS09200at 38.361 kb on - strand, within EX31_RS09200at 38.453 kb on - strand, within EX31_RS09200at 38.627 kb on + strand, within EX31_RS09200at 38.664 kb on + strand, within EX31_RS09200at 38.664 kb on + strand, within EX31_RS09200at 38.702 kb on + strand, within EX31_RS09200at 38.702 kb on + strand, within EX31_RS09200at 38.703 kb on - strand, within EX31_RS09200at 38.703 kb on - strand, within EX31_RS09200at 38.723 kb on + strand, within EX31_RS09200at 38.724 kb on - strand, within EX31_RS09200at 38.724 kb on - strand, within EX31_RS09200at 38.775 kb on - strandat 38.864 kb on + strandat 38.958 kb on + strandat 38.959 kb on - strandat 38.997 kb on + strandat 38.997 kb on + strandat 38.998 kb on - strandat 38.998 kb on - strandat 38.998 kb on - strandat 38.998 kb on - strandat 39.055 kb on + strandat 39.221 kb on + strand, within EX31_RS09205at 39.221 kb on + strand, within EX31_RS09205at 39.222 kb on - strand, within EX31_RS09205at 39.327 kb on + strand, within EX31_RS09205at 39.327 kb on + strand, within EX31_RS09205at 39.327 kb on + strand, within EX31_RS09205at 39.470 kb on + strand, within EX31_RS09205at 39.727 kb on + strandat 39.727 kb on + strandat 39.774 kb on + strandat 39.793 kb on + strandat 39.794 kb on - strandat 39.794 kb on - strandat 39.830 kb on + strandat 39.830 kb on + strandat 39.830 kb on + strandat 39.830 kb on + strandat 39.830 kb on + strandat 39.831 kb on - strandat 39.832 kb on + strandat 39.833 kb on - strandat 39.844 kb on + strandat 39.844 kb on + strandat 39.844 kb on + strandat 39.845 kb on - strandat 39.845 kb on - strandat 39.845 kb on - strandat 39.845 kb on - strandat 39.846 kb on + strandat 39.846 kb on + strandat 39.846 kb on + strandat 39.846 kb on + strandat 39.846 kb on + strandat 39.846 kb on + strandat 39.846 kb on + strandat 39.846 kb on + strandat 39.846 kb on + strandat 39.846 kb on + strandat 39.847 kb on - strandat 39.847 kb on - strandat 39.847 kb on - strandat 39.848 kb on + strandat 39.848 kb on + strandat 39.848 kb on + strandat 39.848 kb on + strandat 39.849 kb on - strandat 39.861 kb on + strandat 39.861 kb on + strandat 39.862 kb on - strandat 39.865 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Ammonium chloride (N); ShewMM media; shaking
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36,978 + EX31_RS09195 0.58 -0.6
36,978 + EX31_RS09195 0.58 +0.4
36,978 + EX31_RS09195 0.58 +0.2
36,979 - EX31_RS09195 0.58 +1.8
36,979 - EX31_RS09195 0.58 -0.8
36,979 - EX31_RS09195 0.58 +0.3
36,979 - EX31_RS09195 0.58 +0.1
37,070 - EX31_RS09195 0.64 -1.1
37,070 - EX31_RS09195 0.64 +1.1
37,100 - EX31_RS09195 0.66 +0.1
37,100 - EX31_RS09195 0.66 +1.2
37,153 + EX31_RS09195 0.69 +0.3
37,154 - EX31_RS09195 0.69 +0.8
37,284 + EX31_RS09195 0.77 -0.6
37,397 - EX31_RS09195 0.84 +1.5
37,397 - EX31_RS09195 0.84 -0.2
37,645 + -0.8
37,646 - -0.3
37,755 + +1.5
37,921 - +2.1
37,921 - +2.1
37,936 - -1.0
38,112 + EX31_RS09200 0.18 +0.2
38,112 + EX31_RS09200 0.18 -0.4
38,112 + EX31_RS09200 0.18 +1.8
38,112 + EX31_RS09200 0.18 +0.4
38,113 - EX31_RS09200 0.18 +0.9
38,238 + EX31_RS09200 0.31 +0.4
38,280 - EX31_RS09200 0.36 +2.4
38,282 + EX31_RS09200 0.36 +1.4
38,282 + EX31_RS09200 0.36 +1.2
38,283 - EX31_RS09200 0.36 +0.6
38,309 + EX31_RS09200 0.39 -1.2
38,310 - EX31_RS09200 0.39 +0.5
38,310 - EX31_RS09200 0.39 -0.2
38,360 + EX31_RS09200 0.45 -1.2
38,360 + EX31_RS09200 0.45 -0.4
38,360 + EX31_RS09200 0.45 -0.5
38,360 + EX31_RS09200 0.45 -2.3
38,360 + EX31_RS09200 0.45 +0.6
38,360 + EX31_RS09200 0.45 +1.2
38,360 + EX31_RS09200 0.45 +1.5
38,360 + EX31_RS09200 0.45 +2.4
38,360 + EX31_RS09200 0.45 -2.0
38,360 + EX31_RS09200 0.45 +2.6
38,361 - EX31_RS09200 0.45 +1.2
38,361 - EX31_RS09200 0.45 +0.8
38,361 - EX31_RS09200 0.45 +1.3
38,361 - EX31_RS09200 0.45 -0.3
38,453 - EX31_RS09200 0.55 +0.5
38,627 + EX31_RS09200 0.74 -0.2
38,664 + EX31_RS09200 0.78 +0.8
38,664 + EX31_RS09200 0.78 +1.0
38,702 + EX31_RS09200 0.82 +0.5
38,702 + EX31_RS09200 0.82 +1.6
38,703 - EX31_RS09200 0.82 +0.1
38,703 - EX31_RS09200 0.82 +0.8
38,723 + EX31_RS09200 0.84 -0.1
38,724 - EX31_RS09200 0.84 -0.5
38,724 - EX31_RS09200 0.84 +0.5
38,775 - +0.7
38,864 + -1.5
38,958 + +0.8
38,959 - -2.4
38,997 + +0.7
38,997 + -1.0
38,998 - -1.1
38,998 - +0.2
38,998 - -0.8
38,998 - +1.8
39,055 + -1.2
39,221 + EX31_RS09205 0.29 -0.8
39,221 + EX31_RS09205 0.29 +1.1
39,222 - EX31_RS09205 0.29 +0.1
39,327 + EX31_RS09205 0.43 +0.8
39,327 + EX31_RS09205 0.43 -0.6
39,327 + EX31_RS09205 0.43 -0.8
39,470 + EX31_RS09205 0.62 +1.8
39,727 + -0.6
39,727 + -0.2
39,774 + +0.2
39,793 + +0.0
39,794 - +0.2
39,794 - +0.5
39,830 + +0.8
39,830 + -0.4
39,830 + -2.5
39,830 + -1.9
39,830 + -0.3
39,831 - +0.0
39,832 + -1.1
39,833 - +2.2
39,844 + -0.5
39,844 + -0.8
39,844 + +0.6
39,845 - +1.1
39,845 - +0.8
39,845 - +3.6
39,845 - -0.8
39,846 + +2.4
39,846 + -1.5
39,846 + +1.2
39,846 + +0.2
39,846 + +1.1
39,846 + -0.8
39,846 + +0.4
39,846 + -0.8
39,846 + -0.9
39,846 + +0.2
39,847 - +0.8
39,847 - +0.6
39,847 - +0.5
39,848 + +0.2
39,848 + +1.2
39,848 + +0.8
39,848 + +0.1
39,849 - -0.1
39,861 + +0.1
39,861 + +0.0
39,862 - -0.5
39,865 + +0.1

Or see this region's nucleotide sequence