Experiment: Ammonium chloride (N); ShewMM media; shaking
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX31_RS05920 and EX31_RS05925 overlap by 4 nucleotides EX31_RS05925 and EX31_RS05930 are separated by 67 nucleotides
EX31_RS05920: EX31_RS05920 - MFS transporter, at 340,342 to 341,634
_RS05920
EX31_RS05925: EX31_RS05925 - glyoxylate/hydroxypyruvate reductase GhrB, at 341,631 to 342,608
_RS05925
EX31_RS05930: EX31_RS05930 - hypothetical protein, at 342,676 to 343,887
_RS05930
Position (kb) 341
342
343 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 340.717 kb on + strand, within EX31_RS05920 at 340.717 kb on + strand, within EX31_RS05920 at 340.717 kb on + strand, within EX31_RS05920 at 340.717 kb on + strand, within EX31_RS05920 at 340.717 kb on + strand, within EX31_RS05920 at 340.717 kb on + strand, within EX31_RS05920 at 340.717 kb on + strand, within EX31_RS05920 at 340.717 kb on + strand, within EX31_RS05920 at 340.717 kb on + strand, within EX31_RS05920 at 340.717 kb on + strand, within EX31_RS05920 at 340.717 kb on + strand, within EX31_RS05920 at 340.717 kb on + strand, within EX31_RS05920 at 340.718 kb on - strand, within EX31_RS05920 at 340.718 kb on - strand, within EX31_RS05920 at 340.718 kb on - strand, within EX31_RS05920 at 340.718 kb on - strand, within EX31_RS05920 at 340.718 kb on - strand, within EX31_RS05920 at 340.718 kb on - strand, within EX31_RS05920 at 340.718 kb on - strand, within EX31_RS05920 at 340.718 kb on - strand, within EX31_RS05920 at 340.718 kb on - strand, within EX31_RS05920 at 340.718 kb on - strand, within EX31_RS05920 at 340.718 kb on - strand, within EX31_RS05920 at 340.718 kb on - strand, within EX31_RS05920 at 340.718 kb on - strand, within EX31_RS05920 at 340.718 kb on - strand, within EX31_RS05920 at 340.718 kb on - strand, within EX31_RS05920 at 340.718 kb on - strand, within EX31_RS05920 at 340.718 kb on - strand, within EX31_RS05920 at 340.719 kb on + strand, within EX31_RS05920 at 340.720 kb on - strand, within EX31_RS05920 at 340.720 kb on - strand, within EX31_RS05920 at 340.720 kb on - strand, within EX31_RS05920 at 340.759 kb on - strand, within EX31_RS05920 at 340.891 kb on - strand, within EX31_RS05920 at 340.914 kb on + strand, within EX31_RS05920 at 340.914 kb on + strand, within EX31_RS05920 at 340.914 kb on + strand, within EX31_RS05920 at 340.914 kb on + strand, within EX31_RS05920 at 340.915 kb on - strand, within EX31_RS05920 at 340.915 kb on - strand, within EX31_RS05920 at 340.915 kb on - strand, within EX31_RS05920 at 341.059 kb on + strand, within EX31_RS05920 at 341.060 kb on - strand, within EX31_RS05920 at 341.060 kb on - strand, within EX31_RS05920 at 341.084 kb on - strand, within EX31_RS05920 at 341.084 kb on - strand, within EX31_RS05920 at 341.170 kb on + strand, within EX31_RS05920 at 341.171 kb on - strand, within EX31_RS05920 at 341.184 kb on + strand, within EX31_RS05920 at 341.232 kb on + strand, within EX31_RS05920 at 341.232 kb on + strand, within EX31_RS05920 at 341.232 kb on + strand, within EX31_RS05920 at 341.233 kb on - strand, within EX31_RS05920 at 341.320 kb on + strand, within EX31_RS05920 at 341.353 kb on + strand, within EX31_RS05920 at 341.353 kb on + strand, within EX31_RS05920 at 341.353 kb on + strand, within EX31_RS05920 at 341.353 kb on + strand, within EX31_RS05920 at 341.353 kb on + strand, within EX31_RS05920 at 341.353 kb on + strand, within EX31_RS05920 at 341.354 kb on - strand, within EX31_RS05920 at 341.354 kb on - strand, within EX31_RS05920 at 341.354 kb on - strand, within EX31_RS05920 at 341.354 kb on - strand, within EX31_RS05920 at 341.354 kb on - strand, within EX31_RS05920 at 341.382 kb on + strand, within EX31_RS05920 at 341.383 kb on - strand, within EX31_RS05920 at 341.496 kb on + strand, within EX31_RS05920 at 341.496 kb on + strand, within EX31_RS05920 at 341.496 kb on + strand, within EX31_RS05920 at 341.496 kb on + strand, within EX31_RS05920 at 341.496 kb on + strand, within EX31_RS05920 at 341.520 kb on + strand at 341.625 kb on + strand at 341.626 kb on - strand at 341.626 kb on - strand at 341.626 kb on - strand at 341.642 kb on + strand at 341.650 kb on + strand at 341.651 kb on - strand at 341.651 kb on - strand at 341.653 kb on - strand at 341.801 kb on + strand, within EX31_RS05925 at 341.860 kb on - strand, within EX31_RS05925 at 341.864 kb on + strand, within EX31_RS05925 at 341.912 kb on + strand, within EX31_RS05925 at 341.912 kb on + strand, within EX31_RS05925 at 341.912 kb on + strand, within EX31_RS05925 at 341.986 kb on + strand, within EX31_RS05925 at 341.986 kb on + strand, within EX31_RS05925 at 341.987 kb on - strand, within EX31_RS05925 at 342.004 kb on + strand, within EX31_RS05925 at 342.005 kb on - strand, within EX31_RS05925 at 342.005 kb on - strand, within EX31_RS05925 at 342.065 kb on + strand, within EX31_RS05925 at 342.065 kb on + strand, within EX31_RS05925 at 342.066 kb on - strand, within EX31_RS05925 at 342.066 kb on - strand, within EX31_RS05925 at 342.077 kb on + strand, within EX31_RS05925 at 342.078 kb on - strand, within EX31_RS05925 at 342.150 kb on + strand, within EX31_RS05925 at 342.170 kb on + strand, within EX31_RS05925 at 342.170 kb on + strand, within EX31_RS05925 at 342.200 kb on + strand, within EX31_RS05925 at 342.201 kb on - strand, within EX31_RS05925 at 342.245 kb on + strand, within EX31_RS05925 at 342.245 kb on + strand, within EX31_RS05925 at 342.245 kb on + strand, within EX31_RS05925 at 342.245 kb on + strand, within EX31_RS05925 at 342.246 kb on - strand, within EX31_RS05925 at 342.246 kb on - strand, within EX31_RS05925 at 342.246 kb on - strand, within EX31_RS05925 at 342.246 kb on - strand, within EX31_RS05925 at 342.246 kb on - strand, within EX31_RS05925 at 342.288 kb on - strand, within EX31_RS05925 at 342.396 kb on + strand, within EX31_RS05925 at 342.408 kb on - strand, within EX31_RS05925 at 342.514 kb on - strand at 342.606 kb on + strand at 342.606 kb on + strand at 342.606 kb on + strand at 342.606 kb on + strand at 342.606 kb on + strand at 342.606 kb on + strand at 342.606 kb on + strand at 342.607 kb on - strand at 342.607 kb on - strand at 342.607 kb on - strand at 342.607 kb on - strand at 342.612 kb on - strand at 342.664 kb on - strand at 342.683 kb on + strand at 342.683 kb on + strand at 342.683 kb on + strand at 342.684 kb on - strand at 342.684 kb on - strand at 342.694 kb on + strand at 342.694 kb on + strand at 342.694 kb on + strand at 342.695 kb on - strand at 342.728 kb on + strand at 342.728 kb on + strand at 342.728 kb on + strand at 342.728 kb on + strand at 342.728 kb on + strand at 342.728 kb on + strand at 342.728 kb on + strand at 342.729 kb on - strand at 342.729 kb on - strand at 342.729 kb on - strand at 342.729 kb on - strand at 342.729 kb on - strand at 342.730 kb on + strand at 342.730 kb on + strand at 342.730 kb on + strand at 342.730 kb on + strand at 342.730 kb on + strand at 342.730 kb on + strand at 342.730 kb on + strand at 342.730 kb on + strand at 342.731 kb on - strand at 342.731 kb on - strand at 342.731 kb on - strand at 342.731 kb on - strand at 342.731 kb on - strand at 342.731 kb on - strand at 342.731 kb on - strand at 342.731 kb on - strand at 342.741 kb on + strand at 342.850 kb on - strand, within EX31_RS05930 at 342.909 kb on + strand, within EX31_RS05930 at 342.910 kb on - strand, within EX31_RS05930 at 342.938 kb on + strand, within EX31_RS05930 at 342.939 kb on - strand, within EX31_RS05930 at 342.941 kb on + strand, within EX31_RS05930 at 342.941 kb on + strand, within EX31_RS05930 at 342.941 kb on + strand, within EX31_RS05930 at 342.942 kb on - strand, within EX31_RS05930 at 342.942 kb on - strand, within EX31_RS05930 at 343.065 kb on + strand, within EX31_RS05930 at 343.066 kb on - strand, within EX31_RS05930 at 343.116 kb on + strand, within EX31_RS05930 at 343.167 kb on - strand, within EX31_RS05930 at 343.215 kb on + strand, within EX31_RS05930 at 343.216 kb on - strand, within EX31_RS05930 at 343.245 kb on - strand, within EX31_RS05930 at 343.245 kb on - strand, within EX31_RS05930 at 343.287 kb on + strand, within EX31_RS05930 at 343.344 kb on - strand, within EX31_RS05930 at 343.350 kb on + strand, within EX31_RS05930 at 343.350 kb on + strand, within EX31_RS05930 at 343.375 kb on - strand, within EX31_RS05930 at 343.497 kb on + strand, within EX31_RS05930 at 343.498 kb on - strand, within EX31_RS05930 at 343.530 kb on + strand, within EX31_RS05930 at 343.530 kb on + strand, within EX31_RS05930 at 343.530 kb on + strand, within EX31_RS05930 at 343.606 kb on + strand, within EX31_RS05930 at 343.606 kb on + strand, within EX31_RS05930 at 343.607 kb on - strand, within EX31_RS05930 at 343.607 kb on - strand, within EX31_RS05930 at 343.607 kb on - strand, within EX31_RS05930 at 343.607 kb on - strand, within EX31_RS05930 at 343.607 kb on - strand, within EX31_RS05930
Per-strain Table
Position Strand Gene LocusTag Fraction Ammonium chloride (N); ShewMM media; shaking remove 340,717 + EX31_RS05920 0.29 -1.1 340,717 + EX31_RS05920 0.29 -0.8 340,717 + EX31_RS05920 0.29 +0.2 340,717 + EX31_RS05920 0.29 +1.0 340,717 + EX31_RS05920 0.29 +0.7 340,717 + EX31_RS05920 0.29 -1.2 340,717 + EX31_RS05920 0.29 +0.0 340,717 + EX31_RS05920 0.29 +0.1 340,717 + EX31_RS05920 0.29 +0.3 340,717 + EX31_RS05920 0.29 -0.3 340,717 + EX31_RS05920 0.29 +0.7 340,717 + EX31_RS05920 0.29 +0.4 340,718 - EX31_RS05920 0.29 +0.2 340,718 - EX31_RS05920 0.29 -0.4 340,718 - EX31_RS05920 0.29 -1.0 340,718 - EX31_RS05920 0.29 +0.4 340,718 - EX31_RS05920 0.29 -0.9 340,718 - EX31_RS05920 0.29 -0.8 340,718 - EX31_RS05920 0.29 -0.4 340,718 - EX31_RS05920 0.29 +2.4 340,718 - EX31_RS05920 0.29 +0.2 340,718 - EX31_RS05920 0.29 +0.4 340,718 - EX31_RS05920 0.29 -0.1 340,718 - EX31_RS05920 0.29 +0.5 340,718 - EX31_RS05920 0.29 -0.3 340,718 - EX31_RS05920 0.29 +0.8 340,718 - EX31_RS05920 0.29 -0.1 340,718 - EX31_RS05920 0.29 +0.8 340,718 - EX31_RS05920 0.29 -0.4 340,719 + EX31_RS05920 0.29 +2.2 340,720 - EX31_RS05920 0.29 -0.1 340,720 - EX31_RS05920 0.29 +0.2 340,720 - EX31_RS05920 0.29 +0.5 340,759 - EX31_RS05920 0.32 +2.0 340,891 - EX31_RS05920 0.42 -0.1 340,914 + EX31_RS05920 0.44 +1.4 340,914 + EX31_RS05920 0.44 +0.4 340,914 + EX31_RS05920 0.44 -0.1 340,914 + EX31_RS05920 0.44 -0.1 340,915 - EX31_RS05920 0.44 +1.9 340,915 - EX31_RS05920 0.44 -0.3 340,915 - EX31_RS05920 0.44 +0.1 341,059 + EX31_RS05920 0.55 +1.1 341,060 - EX31_RS05920 0.56 +0.3 341,060 - EX31_RS05920 0.56 -1.1 341,084 - EX31_RS05920 0.57 +0.3 341,084 - EX31_RS05920 0.57 +1.1 341,170 + EX31_RS05920 0.64 +1.1 341,171 - EX31_RS05920 0.64 -2.9 341,184 + EX31_RS05920 0.65 -0.8 341,232 + EX31_RS05920 0.69 +0.7 341,232 + EX31_RS05920 0.69 +0.7 341,232 + EX31_RS05920 0.69 +0.0 341,233 - EX31_RS05920 0.69 -0.1 341,320 + EX31_RS05920 0.76 -0.2 341,353 + EX31_RS05920 0.78 +0.8 341,353 + EX31_RS05920 0.78 +0.6 341,353 + EX31_RS05920 0.78 -0.2 341,353 + EX31_RS05920 0.78 -1.1 341,353 + EX31_RS05920 0.78 -0.1 341,353 + EX31_RS05920 0.78 +0.1 341,354 - EX31_RS05920 0.78 -0.3 341,354 - EX31_RS05920 0.78 -0.4 341,354 - EX31_RS05920 0.78 +2.1 341,354 - EX31_RS05920 0.78 -0.3 341,354 - EX31_RS05920 0.78 +0.0 341,382 + EX31_RS05920 0.80 -0.7 341,383 - EX31_RS05920 0.81 -0.3 341,496 + EX31_RS05920 0.89 +0.3 341,496 + EX31_RS05920 0.89 -0.6 341,496 + EX31_RS05920 0.89 +0.2 341,496 + EX31_RS05920 0.89 +0.8 341,496 + EX31_RS05920 0.89 +2.2 341,520 + +0.6 341,625 + -0.0 341,626 - +0.4 341,626 - +0.4 341,626 - +0.7 341,642 + +0.2 341,650 + -0.6 341,651 - +0.7 341,651 - -0.8 341,653 - -0.1 341,801 + EX31_RS05925 0.17 -0.8 341,860 - EX31_RS05925 0.23 -0.6 341,864 + EX31_RS05925 0.24 -0.3 341,912 + EX31_RS05925 0.29 -0.3 341,912 + EX31_RS05925 0.29 -2.1 341,912 + EX31_RS05925 0.29 +0.3 341,986 + EX31_RS05925 0.36 -1.7 341,986 + EX31_RS05925 0.36 -0.9 341,987 - EX31_RS05925 0.36 -1.8 342,004 + EX31_RS05925 0.38 +0.8 342,005 - EX31_RS05925 0.38 -0.1 342,005 - EX31_RS05925 0.38 -0.5 342,065 + EX31_RS05925 0.44 -0.5 342,065 + EX31_RS05925 0.44 -0.4 342,066 - EX31_RS05925 0.44 +1.3 342,066 - EX31_RS05925 0.44 +0.6 342,077 + EX31_RS05925 0.46 +0.6 342,078 - EX31_RS05925 0.46 -0.3 342,150 + EX31_RS05925 0.53 -0.4 342,170 + EX31_RS05925 0.55 -1.4 342,170 + EX31_RS05925 0.55 +0.7 342,200 + EX31_RS05925 0.58 -0.2 342,201 - EX31_RS05925 0.58 +0.8 342,245 + EX31_RS05925 0.63 +0.2 342,245 + EX31_RS05925 0.63 +0.3 342,245 + EX31_RS05925 0.63 -0.5 342,245 + EX31_RS05925 0.63 +0.0 342,246 - EX31_RS05925 0.63 -0.3 342,246 - EX31_RS05925 0.63 -0.9 342,246 - EX31_RS05925 0.63 -0.1 342,246 - EX31_RS05925 0.63 -1.2 342,246 - EX31_RS05925 0.63 +1.2 342,288 - EX31_RS05925 0.67 -0.7 342,396 + EX31_RS05925 0.78 +0.2 342,408 - EX31_RS05925 0.79 -0.1 342,514 - +0.3 342,606 + -0.3 342,606 + -0.4 342,606 + +0.5 342,606 + +0.8 342,606 + -0.3 342,606 + +0.8 342,606 + -0.1 342,607 - +0.4 342,607 - +1.2 342,607 - +0.2 342,607 - -0.7 342,612 - +0.6 342,664 - +1.2 342,683 + -0.4 342,683 + +1.0 342,683 + +0.5 342,684 - +0.7 342,684 - +0.8 342,694 + +0.4 342,694 + -0.2 342,694 + -0.4 342,695 - +0.1 342,728 + +0.0 342,728 + -0.1 342,728 + +0.5 342,728 + +0.5 342,728 + +0.2 342,728 + +0.3 342,728 + -0.6 342,729 - -0.7 342,729 - +0.0 342,729 - -0.5 342,729 - +0.2 342,729 - +0.8 342,730 + -1.7 342,730 + -0.8 342,730 + +0.3 342,730 + +0.7 342,730 + +0.7 342,730 + +0.7 342,730 + +0.3 342,730 + +0.9 342,731 - +0.1 342,731 - -0.4 342,731 - -0.7 342,731 - -0.8 342,731 - +0.1 342,731 - +0.9 342,731 - -0.0 342,731 - -1.6 342,741 + +0.1 342,850 - EX31_RS05930 0.14 -1.3 342,909 + EX31_RS05930 0.19 +0.1 342,910 - EX31_RS05930 0.19 +0.1 342,938 + EX31_RS05930 0.22 -0.5 342,939 - EX31_RS05930 0.22 +0.9 342,941 + EX31_RS05930 0.22 -0.2 342,941 + EX31_RS05930 0.22 +0.0 342,941 + EX31_RS05930 0.22 -1.2 342,942 - EX31_RS05930 0.22 +0.2 342,942 - EX31_RS05930 0.22 -0.8 343,065 + EX31_RS05930 0.32 -0.3 343,066 - EX31_RS05930 0.32 +0.1 343,116 + EX31_RS05930 0.36 -0.3 343,167 - EX31_RS05930 0.41 +0.4 343,215 + EX31_RS05930 0.44 +0.1 343,216 - EX31_RS05930 0.45 -0.3 343,245 - EX31_RS05930 0.47 -0.5 343,245 - EX31_RS05930 0.47 +0.1 343,287 + EX31_RS05930 0.50 +0.4 343,344 - EX31_RS05930 0.55 -0.3 343,350 + EX31_RS05930 0.56 +1.4 343,350 + EX31_RS05930 0.56 +0.1 343,375 - EX31_RS05930 0.58 -0.3 343,497 + EX31_RS05930 0.68 +0.1 343,498 - EX31_RS05930 0.68 +0.5 343,530 + EX31_RS05930 0.70 +1.6 343,530 + EX31_RS05930 0.70 +0.0 343,530 + EX31_RS05930 0.70 -0.2 343,606 + EX31_RS05930 0.77 +0.7 343,606 + EX31_RS05930 0.77 +0.4 343,607 - EX31_RS05930 0.77 +0.4 343,607 - EX31_RS05930 0.77 +0.7 343,607 - EX31_RS05930 0.77 -0.3 343,607 - EX31_RS05930 0.77 -0.1 343,607 - EX31_RS05930 0.77 -0.1
Or see this region's nucleotide sequence