Experiment: Ammonium chloride (N); ShewMM media; shaking
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX31_RS02010 and EX31_RS25105 are separated by 11 nucleotides EX31_RS25105 and EX31_RS02015 are separated by 36 nucleotides EX31_RS02015 and EX31_RS02020 are separated by 47 nucleotides
EX31_RS02010: EX31_RS02010 - cytochrome d ubiquinol oxidase subunit II, at 440,199 to 441,206
_RS02010
EX31_RS25105: EX31_RS25105 - DUF2474 domain-containing protein, at 441,218 to 441,382
_RS25105
EX31_RS02015: EX31_RS02015 - TetR family transcriptional regulator, at 441,419 to 441,997
_RS02015
EX31_RS02020: EX31_RS02020 - MFS transporter, at 442,045 to 443,541
_RS02020
Position (kb) 441
442 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 440.495 kb on - strand, within EX31_RS02010 at 440.640 kb on + strand, within EX31_RS02010 at 440.640 kb on + strand, within EX31_RS02010 at 440.640 kb on + strand, within EX31_RS02010 at 440.640 kb on + strand, within EX31_RS02010 at 440.640 kb on + strand, within EX31_RS02010 at 440.641 kb on - strand, within EX31_RS02010 at 440.641 kb on - strand, within EX31_RS02010 at 440.800 kb on + strand, within EX31_RS02010 at 440.941 kb on - strand, within EX31_RS02010 at 440.941 kb on - strand, within EX31_RS02010 at 441.009 kb on + strand, within EX31_RS02010 at 441.010 kb on - strand, within EX31_RS02010 at 441.144 kb on + strand at 441.160 kb on - strand at 441.162 kb on + strand at 441.162 kb on + strand at 441.163 kb on - strand at 441.163 kb on - strand at 441.257 kb on - strand, within EX31_RS25105 at 441.322 kb on - strand, within EX31_RS25105 at 441.380 kb on + strand at 441.380 kb on + strand at 441.455 kb on - strand at 441.514 kb on - strand, within EX31_RS02015 at 441.625 kb on + strand, within EX31_RS02015 at 441.625 kb on + strand, within EX31_RS02015 at 441.626 kb on - strand, within EX31_RS02015 at 441.626 kb on - strand, within EX31_RS02015 at 441.626 kb on - strand, within EX31_RS02015 at 441.626 kb on - strand, within EX31_RS02015 at 441.626 kb on - strand, within EX31_RS02015 at 441.626 kb on - strand, within EX31_RS02015 at 441.626 kb on - strand, within EX31_RS02015 at 441.626 kb on - strand, within EX31_RS02015 at 441.626 kb on - strand, within EX31_RS02015 at 441.626 kb on - strand, within EX31_RS02015 at 441.626 kb on - strand, within EX31_RS02015 at 441.665 kb on - strand, within EX31_RS02015 at 441.694 kb on - strand, within EX31_RS02015 at 441.707 kb on - strand, within EX31_RS02015 at 441.730 kb on - strand, within EX31_RS02015 at 441.730 kb on - strand, within EX31_RS02015 at 441.730 kb on - strand, within EX31_RS02015 at 441.730 kb on - strand, within EX31_RS02015 at 441.865 kb on - strand, within EX31_RS02015 at 441.865 kb on - strand, within EX31_RS02015 at 441.892 kb on - strand, within EX31_RS02015 at 441.998 kb on - strand at 442.044 kb on - strand at 442.044 kb on - strand at 442.074 kb on + strand at 442.074 kb on + strand at 442.075 kb on - strand at 442.908 kb on - strand, within EX31_RS02020 at 442.971 kb on + strand, within EX31_RS02020 at 442.971 kb on + strand, within EX31_RS02020 at 442.972 kb on - strand, within EX31_RS02020 at 442.975 kb on - strand, within EX31_RS02020
Per-strain Table
Position Strand Gene LocusTag Fraction Ammonium chloride (N); ShewMM media; shaking remove 440,495 - EX31_RS02010 0.29 +2.1 440,640 + EX31_RS02010 0.44 -0.5 440,640 + EX31_RS02010 0.44 -0.2 440,640 + EX31_RS02010 0.44 -1.1 440,640 + EX31_RS02010 0.44 -0.2 440,640 + EX31_RS02010 0.44 +0.4 440,641 - EX31_RS02010 0.44 +1.3 440,641 - EX31_RS02010 0.44 -0.8 440,800 + EX31_RS02010 0.60 +1.5 440,941 - EX31_RS02010 0.74 +1.4 440,941 - EX31_RS02010 0.74 +0.2 441,009 + EX31_RS02010 0.80 -0.1 441,010 - EX31_RS02010 0.80 +1.5 441,144 + +3.3 441,160 - -1.1 441,162 + +0.4 441,162 + -0.4 441,163 - +0.1 441,163 - -1.3 441,257 - EX31_RS25105 0.24 -1.9 441,322 - EX31_RS25105 0.63 +0.6 441,380 + -0.5 441,380 + -0.1 441,455 - +0.2 441,514 - EX31_RS02015 0.16 -0.9 441,625 + EX31_RS02015 0.36 -0.9 441,625 + EX31_RS02015 0.36 -0.9 441,626 - EX31_RS02015 0.36 -0.0 441,626 - EX31_RS02015 0.36 -1.4 441,626 - EX31_RS02015 0.36 -0.4 441,626 - EX31_RS02015 0.36 +0.2 441,626 - EX31_RS02015 0.36 -0.4 441,626 - EX31_RS02015 0.36 -1.5 441,626 - EX31_RS02015 0.36 -0.8 441,626 - EX31_RS02015 0.36 -0.1 441,626 - EX31_RS02015 0.36 -0.1 441,626 - EX31_RS02015 0.36 +0.4 441,626 - EX31_RS02015 0.36 -0.8 441,665 - EX31_RS02015 0.42 -0.4 441,694 - EX31_RS02015 0.47 +0.1 441,707 - EX31_RS02015 0.50 -2.3 441,730 - EX31_RS02015 0.54 +0.7 441,730 - EX31_RS02015 0.54 -0.3 441,730 - EX31_RS02015 0.54 -2.0 441,730 - EX31_RS02015 0.54 +1.3 441,865 - EX31_RS02015 0.77 -0.8 441,865 - EX31_RS02015 0.77 -0.9 441,892 - EX31_RS02015 0.82 -2.6 441,998 - -2.0 442,044 - -0.3 442,044 - +0.8 442,074 + -0.4 442,074 + -0.2 442,075 - -0.0 442,908 - EX31_RS02020 0.58 -0.8 442,971 + EX31_RS02020 0.62 -0.4 442,971 + EX31_RS02020 0.62 +1.0 442,972 - EX31_RS02020 0.62 -0.8 442,975 - EX31_RS02020 0.62 -0.6
Or see this region's nucleotide sequence