Experiment: Ammonium chloride (N); ShewMM media; shaking
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX31_RS01320 and EX31_RS01325 are separated by 308 nucleotides EX31_RS01325 and EX31_RS01330 are separated by 345 nucleotides
EX31_RS01320: EX31_RS01320 - magnesium-translocating P-type ATPase, at 292,881 to 295,595
_RS01320
EX31_RS01325: EX31_RS01325 - hypothetical protein, at 295,904 to 296,149
_RS01325
EX31_RS01330: EX31_RS01330 - porin, at 296,495 to 297,175
_RS01330
Position (kb) 295
296
297 Strain fitness (log2 ratio) -1
0
1
2 at 294.930 kb on + strand, within EX31_RS01320 at 294.931 kb on - strand, within EX31_RS01320 at 294.931 kb on - strand, within EX31_RS01320 at 294.931 kb on - strand, within EX31_RS01320 at 294.931 kb on - strand, within EX31_RS01320 at 294.996 kb on - strand, within EX31_RS01320 at 294.999 kb on + strand, within EX31_RS01320 at 294.999 kb on + strand, within EX31_RS01320 at 295.000 kb on - strand, within EX31_RS01320 at 295.000 kb on - strand, within EX31_RS01320 at 295.000 kb on - strand, within EX31_RS01320 at 295.000 kb on - strand, within EX31_RS01320 at 295.000 kb on - strand, within EX31_RS01320 at 295.000 kb on - strand, within EX31_RS01320 at 295.024 kb on - strand, within EX31_RS01320 at 295.024 kb on - strand, within EX31_RS01320 at 295.051 kb on + strand, within EX31_RS01320 at 295.138 kb on - strand, within EX31_RS01320 at 295.195 kb on + strand, within EX31_RS01320 at 295.249 kb on + strand, within EX31_RS01320 at 295.339 kb on + strand at 295.339 kb on + strand at 295.339 kb on + strand at 295.368 kb on + strand at 295.368 kb on + strand at 295.415 kb on - strand at 295.574 kb on + strand at 295.575 kb on - strand at 295.587 kb on + strand at 295.601 kb on + strand at 295.602 kb on - strand at 295.807 kb on - strand at 295.889 kb on - strand at 296.091 kb on - strand, within EX31_RS01325 at 296.150 kb on - strand at 296.150 kb on - strand at 296.150 kb on - strand at 296.191 kb on - strand at 296.253 kb on - strand at 296.253 kb on - strand at 296.259 kb on - strand at 296.259 kb on - strand at 296.298 kb on - strand at 296.325 kb on - strand at 296.325 kb on - strand at 296.325 kb on - strand at 296.329 kb on - strand at 296.335 kb on - strand at 296.348 kb on - strand at 296.380 kb on + strand at 296.408 kb on - strand at 296.411 kb on - strand at 296.411 kb on - strand at 296.605 kb on + strand, within EX31_RS01330 at 296.608 kb on - strand, within EX31_RS01330 at 296.619 kb on - strand, within EX31_RS01330 at 296.682 kb on + strand, within EX31_RS01330 at 296.773 kb on - strand, within EX31_RS01330 at 296.827 kb on + strand, within EX31_RS01330 at 296.828 kb on - strand, within EX31_RS01330 at 296.853 kb on + strand, within EX31_RS01330 at 296.854 kb on - strand, within EX31_RS01330 at 297.067 kb on + strand, within EX31_RS01330 at 297.067 kb on + strand, within EX31_RS01330 at 297.067 kb on + strand, within EX31_RS01330
Per-strain Table
Position Strand Gene LocusTag Fraction Ammonium chloride (N); ShewMM media; shaking remove 294,930 + EX31_RS01320 0.75 -0.7 294,931 - EX31_RS01320 0.76 +0.8 294,931 - EX31_RS01320 0.76 -1.0 294,931 - EX31_RS01320 0.76 +0.3 294,931 - EX31_RS01320 0.76 -0.1 294,996 - EX31_RS01320 0.78 +1.5 294,999 + EX31_RS01320 0.78 -0.8 294,999 + EX31_RS01320 0.78 +0.5 295,000 - EX31_RS01320 0.78 -1.4 295,000 - EX31_RS01320 0.78 -0.2 295,000 - EX31_RS01320 0.78 +0.1 295,000 - EX31_RS01320 0.78 +0.8 295,000 - EX31_RS01320 0.78 -1.4 295,000 - EX31_RS01320 0.78 +0.2 295,024 - EX31_RS01320 0.79 +0.6 295,024 - EX31_RS01320 0.79 +0.2 295,051 + EX31_RS01320 0.80 +0.5 295,138 - EX31_RS01320 0.83 +1.0 295,195 + EX31_RS01320 0.85 +2.3 295,249 + EX31_RS01320 0.87 -0.4 295,339 + -1.1 295,339 + +0.5 295,339 + -0.9 295,368 + -0.2 295,368 + +0.4 295,415 - -0.2 295,574 + +0.4 295,575 - -1.2 295,587 + +1.2 295,601 + -0.2 295,602 - -1.2 295,807 - -0.3 295,889 - -0.2 296,091 - EX31_RS01325 0.76 -1.0 296,150 - -0.0 296,150 - +0.0 296,150 - -1.0 296,191 - -1.0 296,253 - +0.9 296,253 - -0.9 296,259 - +0.1 296,259 - +2.1 296,298 - +0.3 296,325 - -0.1 296,325 - +0.1 296,325 - +0.7 296,329 - +0.2 296,335 - -0.0 296,348 - +0.6 296,380 + -1.2 296,408 - +1.1 296,411 - +0.7 296,411 - -1.5 296,605 + EX31_RS01330 0.16 -0.5 296,608 - EX31_RS01330 0.17 -0.2 296,619 - EX31_RS01330 0.18 +0.6 296,682 + EX31_RS01330 0.27 +1.1 296,773 - EX31_RS01330 0.41 +0.1 296,827 + EX31_RS01330 0.49 +0.5 296,828 - EX31_RS01330 0.49 +1.3 296,853 + EX31_RS01330 0.53 -0.6 296,854 - EX31_RS01330 0.53 -0.9 297,067 + EX31_RS01330 0.84 -0.6 297,067 + EX31_RS01330 0.84 -1.2 297,067 + EX31_RS01330 0.84 -1.5
Or see this region's nucleotide sequence