Strain Fitness in Pedobacter sp. GW460-11-11-14-LB5 around CA265_RS24910

Experiment: R2A

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntCA265_RS24905 and CA265_RS24910 are separated by 143 nucleotidesCA265_RS24910 and CA265_RS24915 are separated by 361 nucleotides CA265_RS24905: CA265_RS24905 - lipoyl synthase, at 6,073,637 to 6,074,530 _RS24905 CA265_RS24910: CA265_RS24910 - GNAT family N-acetyltransferase, at 6,074,674 to 6,075,105 _RS24910 CA265_RS24915: CA265_RS24915 - cysteine--tRNA ligase, at 6,075,467 to 6,076,927 _RS24915 Position (kb) 6074 6075 6076Strain fitness (log2 ratio) -1 0 1at 6074.562 kb on + strandat 6074.563 kb on - strandat 6074.764 kb on - strand, within CA265_RS24910at 6074.909 kb on - strand, within CA265_RS24910at 6074.976 kb on + strand, within CA265_RS24910at 6075.049 kb on - strand, within CA265_RS24910at 6075.049 kb on - strand, within CA265_RS24910at 6075.053 kb on - strand, within CA265_RS24910at 6075.053 kb on - strand, within CA265_RS24910at 6075.107 kb on + strandat 6075.108 kb on - strandat 6075.121 kb on - strandat 6075.124 kb on + strandat 6075.125 kb on - strandat 6075.182 kb on + strandat 6075.182 kb on + strandat 6075.191 kb on + strandat 6075.302 kb on + strandat 6075.323 kb on + strandat 6075.323 kb on + strandat 6075.324 kb on - strandat 6075.332 kb on + strandat 6075.332 kb on + strandat 6075.333 kb on - strandat 6075.365 kb on + strandat 6075.375 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction R2A
remove
6,074,562 + +0.0
6,074,563 - -0.2
6,074,764 - CA265_RS24910 0.21 +1.0
6,074,909 - CA265_RS24910 0.54 +0.6
6,074,976 + CA265_RS24910 0.70 -0.7
6,075,049 - CA265_RS24910 0.87 +0.6
6,075,049 - CA265_RS24910 0.87 -0.1
6,075,053 - CA265_RS24910 0.88 +0.7
6,075,053 - CA265_RS24910 0.88 +0.2
6,075,107 + +0.1
6,075,108 - +0.8
6,075,121 - +0.5
6,075,124 + +0.3
6,075,125 - -0.6
6,075,182 + +0.7
6,075,182 + -0.5
6,075,191 + +0.2
6,075,302 + -0.3
6,075,323 + +0.8
6,075,323 + +1.3
6,075,324 - -0.3
6,075,332 + -0.7
6,075,332 + +0.3
6,075,333 - -0.1
6,075,365 + +1.0
6,075,375 + +0.1

Or see this region's nucleotide sequence