Experiment: R2A
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA265_RS24600 and CA265_RS24605 are separated by 402 nucleotides CA265_RS24605 and CA265_RS24610 are separated by 149 nucleotides
CA265_RS24600: CA265_RS24600 - glutaminase, at 5,996,165 to 5,998,639
_RS24600
CA265_RS24605: CA265_RS24605 - hypothetical protein, at 5,999,042 to 5,999,287
_RS24605
CA265_RS24610: CA265_RS24610 - DNA polymerase IV, at 5,999,437 to 6,000,537
_RS24610
Position (kb) 5999
6000 Strain fitness (log2 ratio) -2
-1
0
1 at 5998.057 kb on - strand, within CA265_RS24600 at 5998.057 kb on - strand, within CA265_RS24600 at 5998.107 kb on + strand, within CA265_RS24600 at 5998.201 kb on + strand, within CA265_RS24600 at 5998.244 kb on + strand, within CA265_RS24600 at 5998.245 kb on - strand, within CA265_RS24600 at 5998.286 kb on + strand, within CA265_RS24600 at 5998.287 kb on - strand, within CA265_RS24600 at 5998.289 kb on - strand, within CA265_RS24600 at 5998.311 kb on + strand, within CA265_RS24600 at 5998.359 kb on - strand, within CA265_RS24600 at 5998.378 kb on + strand, within CA265_RS24600 at 5998.382 kb on + strand, within CA265_RS24600 at 5998.383 kb on - strand, within CA265_RS24600 at 5998.387 kb on + strand, within CA265_RS24600 at 5998.388 kb on - strand, within CA265_RS24600 at 5998.395 kb on + strand at 5998.445 kb on - strand at 5998.588 kb on - strand at 5998.588 kb on - strand at 5998.588 kb on - strand at 5998.601 kb on + strand at 5998.602 kb on - strand at 5998.676 kb on + strand at 5998.681 kb on - strand at 5998.731 kb on + strand at 5998.807 kb on - strand at 5999.004 kb on + strand at 5999.004 kb on + strand at 5999.005 kb on - strand at 5999.005 kb on - strand at 5999.005 kb on - strand at 5999.008 kb on + strand at 5999.009 kb on - strand at 5999.025 kb on - strand at 5999.063 kb on + strand at 5999.238 kb on + strand, within CA265_RS24605 at 5999.239 kb on - strand, within CA265_RS24605 at 5999.345 kb on + strand at 5999.346 kb on - strand at 5999.365 kb on + strand at 5999.366 kb on - strand at 5999.414 kb on - strand at 5999.419 kb on - strand at 5999.432 kb on - strand at 5999.493 kb on - strand at 5999.508 kb on + strand at 5999.508 kb on + strand at 5999.511 kb on + strand at 5999.512 kb on - strand at 5999.581 kb on + strand, within CA265_RS24610 at 5999.581 kb on + strand, within CA265_RS24610 at 5999.773 kb on - strand, within CA265_RS24610 at 5999.922 kb on + strand, within CA265_RS24610 at 5999.923 kb on - strand, within CA265_RS24610 at 6000.024 kb on + strand, within CA265_RS24610 at 6000.032 kb on - strand, within CA265_RS24610 at 6000.215 kb on - strand, within CA265_RS24610 at 6000.278 kb on + strand, within CA265_RS24610 at 6000.279 kb on - strand, within CA265_RS24610
Per-strain Table
Position Strand Gene LocusTag Fraction R2A remove 5,998,057 - CA265_RS24600 0.76 +0.9 5,998,057 - CA265_RS24600 0.76 +0.1 5,998,107 + CA265_RS24600 0.78 +0.7 5,998,201 + CA265_RS24600 0.82 +0.6 5,998,244 + CA265_RS24600 0.84 -0.3 5,998,245 - CA265_RS24600 0.84 -0.4 5,998,286 + CA265_RS24600 0.86 -1.9 5,998,287 - CA265_RS24600 0.86 +0.0 5,998,289 - CA265_RS24600 0.86 +0.3 5,998,311 + CA265_RS24600 0.87 -0.2 5,998,359 - CA265_RS24600 0.89 -0.7 5,998,378 + CA265_RS24600 0.89 -0.0 5,998,382 + CA265_RS24600 0.90 -1.1 5,998,383 - CA265_RS24600 0.90 +0.1 5,998,387 + CA265_RS24600 0.90 +0.4 5,998,388 - CA265_RS24600 0.90 +0.2 5,998,395 + +0.3 5,998,445 - -2.1 5,998,588 - +1.6 5,998,588 - -1.2 5,998,588 - -1.5 5,998,601 + +0.3 5,998,602 - +1.3 5,998,676 + +0.0 5,998,681 - -0.0 5,998,731 + -0.4 5,998,807 - -2.4 5,999,004 + -0.1 5,999,004 + -1.0 5,999,005 - +0.1 5,999,005 - -0.1 5,999,005 - +1.1 5,999,008 + -0.2 5,999,009 - +0.5 5,999,025 - -0.6 5,999,063 + +0.7 5,999,238 + CA265_RS24605 0.80 +0.6 5,999,239 - CA265_RS24605 0.80 -0.6 5,999,345 + -0.3 5,999,346 - -0.1 5,999,365 + +0.5 5,999,366 - +1.6 5,999,414 - -0.2 5,999,419 - -0.5 5,999,432 - +0.6 5,999,493 - -0.4 5,999,508 + +0.5 5,999,508 + -0.4 5,999,511 + -0.5 5,999,512 - +0.3 5,999,581 + CA265_RS24610 0.13 +0.9 5,999,581 + CA265_RS24610 0.13 -0.7 5,999,773 - CA265_RS24610 0.31 -0.3 5,999,922 + CA265_RS24610 0.44 -0.0 5,999,923 - CA265_RS24610 0.44 -0.5 6,000,024 + CA265_RS24610 0.53 +0.1 6,000,032 - CA265_RS24610 0.54 -0.1 6,000,215 - CA265_RS24610 0.71 -0.7 6,000,278 + CA265_RS24610 0.76 -1.2 6,000,279 - CA265_RS24610 0.76 +0.6
Or see this region's nucleotide sequence