Experiment: R2A
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA265_RS24430 and CA265_RS24435 are separated by 199 nucleotides CA265_RS24435 and CA265_RS24440 are separated by 10 nucleotides
CA265_RS24430: CA265_RS24430 - hypothetical protein, at 5,950,081 to 5,950,698
_RS24430
CA265_RS24435: CA265_RS24435 - hypothetical protein, at 5,950,898 to 5,952,796
_RS24435
CA265_RS24440: CA265_RS24440 - hypothetical protein, at 5,952,807 to 5,953,856
_RS24440
Position (kb) 5950
5951
5952
5953 Strain fitness (log2 ratio) -2
-1
0
1 at 5949.910 kb on - strand at 5950.019 kb on - strand at 5950.094 kb on + strand at 5950.097 kb on + strand at 5950.260 kb on - strand, within CA265_RS24430 at 5950.272 kb on + strand, within CA265_RS24430 at 5950.288 kb on - strand, within CA265_RS24430 at 5950.463 kb on + strand, within CA265_RS24430 at 5950.464 kb on - strand, within CA265_RS24430 at 5950.482 kb on + strand, within CA265_RS24430 at 5950.540 kb on + strand, within CA265_RS24430 at 5950.541 kb on - strand, within CA265_RS24430 at 5950.541 kb on - strand, within CA265_RS24430 at 5950.543 kb on - strand, within CA265_RS24430 at 5950.645 kb on - strand at 5950.645 kb on - strand at 5950.697 kb on - strand at 5950.717 kb on + strand at 5950.873 kb on - strand at 5950.906 kb on + strand at 5951.010 kb on - strand at 5951.010 kb on - strand at 5951.051 kb on + strand at 5951.054 kb on - strand at 5951.058 kb on + strand at 5951.059 kb on - strand at 5951.097 kb on + strand, within CA265_RS24435 at 5951.168 kb on - strand, within CA265_RS24435 at 5951.181 kb on - strand, within CA265_RS24435 at 5951.181 kb on - strand, within CA265_RS24435 at 5951.187 kb on - strand, within CA265_RS24435 at 5951.187 kb on - strand, within CA265_RS24435 at 5951.196 kb on - strand, within CA265_RS24435 at 5951.228 kb on - strand, within CA265_RS24435 at 5951.263 kb on - strand, within CA265_RS24435 at 5951.277 kb on - strand, within CA265_RS24435 at 5951.351 kb on - strand, within CA265_RS24435 at 5951.402 kb on - strand, within CA265_RS24435 at 5951.427 kb on - strand, within CA265_RS24435 at 5951.465 kb on - strand, within CA265_RS24435 at 5951.465 kb on - strand, within CA265_RS24435 at 5951.531 kb on - strand, within CA265_RS24435 at 5951.556 kb on - strand, within CA265_RS24435 at 5951.560 kb on - strand, within CA265_RS24435 at 5951.560 kb on - strand, within CA265_RS24435 at 5951.641 kb on - strand, within CA265_RS24435 at 5951.928 kb on - strand, within CA265_RS24435 at 5951.928 kb on - strand, within CA265_RS24435 at 5951.981 kb on - strand, within CA265_RS24435 at 5951.981 kb on - strand, within CA265_RS24435 at 5951.995 kb on - strand, within CA265_RS24435 at 5952.076 kb on - strand, within CA265_RS24435 at 5952.203 kb on - strand, within CA265_RS24435 at 5952.306 kb on - strand, within CA265_RS24435 at 5952.368 kb on - strand, within CA265_RS24435 at 5952.368 kb on - strand, within CA265_RS24435 at 5952.463 kb on - strand, within CA265_RS24435 at 5952.508 kb on - strand, within CA265_RS24435 at 5952.599 kb on - strand, within CA265_RS24435 at 5952.610 kb on - strand at 5952.610 kb on - strand at 5952.628 kb on - strand at 5952.628 kb on - strand at 5952.628 kb on - strand at 5952.671 kb on - strand at 5952.699 kb on - strand at 5952.699 kb on - strand at 5952.699 kb on - strand at 5952.699 kb on - strand at 5952.723 kb on - strand at 5952.884 kb on + strand at 5952.940 kb on - strand, within CA265_RS24440 at 5952.952 kb on - strand, within CA265_RS24440 at 5952.957 kb on + strand, within CA265_RS24440 at 5952.962 kb on - strand, within CA265_RS24440 at 5953.051 kb on + strand, within CA265_RS24440 at 5953.070 kb on + strand, within CA265_RS24440 at 5953.070 kb on + strand, within CA265_RS24440 at 5953.072 kb on + strand, within CA265_RS24440 at 5953.072 kb on + strand, within CA265_RS24440 at 5953.073 kb on - strand, within CA265_RS24440 at 5953.092 kb on - strand, within CA265_RS24440 at 5953.092 kb on - strand, within CA265_RS24440 at 5953.100 kb on + strand, within CA265_RS24440 at 5953.102 kb on + strand, within CA265_RS24440 at 5953.139 kb on + strand, within CA265_RS24440 at 5953.161 kb on - strand, within CA265_RS24440 at 5953.187 kb on - strand, within CA265_RS24440 at 5953.216 kb on - strand, within CA265_RS24440 at 5953.229 kb on + strand, within CA265_RS24440 at 5953.230 kb on - strand, within CA265_RS24440 at 5953.258 kb on + strand, within CA265_RS24440 at 5953.262 kb on + strand at 5953.271 kb on + strand, within CA265_RS24440 at 5953.281 kb on + strand, within CA265_RS24440 at 5953.282 kb on - strand, within CA265_RS24440 at 5953.282 kb on - strand, within CA265_RS24440 at 5953.337 kb on + strand, within CA265_RS24440 at 5953.338 kb on - strand, within CA265_RS24440 at 5953.346 kb on + strand, within CA265_RS24440 at 5953.380 kb on - strand, within CA265_RS24440 at 5953.396 kb on - strand, within CA265_RS24440 at 5953.396 kb on - strand, within CA265_RS24440 at 5953.421 kb on + strand, within CA265_RS24440 at 5953.431 kb on + strand, within CA265_RS24440 at 5953.433 kb on + strand, within CA265_RS24440 at 5953.534 kb on - strand, within CA265_RS24440 at 5953.596 kb on + strand, within CA265_RS24440 at 5953.597 kb on - strand, within CA265_RS24440 at 5953.614 kb on + strand, within CA265_RS24440 at 5953.756 kb on + strand at 5953.770 kb on + strand at 5953.773 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction R2A remove 5,949,910 - +0.6 5,950,019 - -0.4 5,950,094 + -0.9 5,950,097 + -1.7 5,950,260 - CA265_RS24430 0.29 -0.5 5,950,272 + CA265_RS24430 0.31 -1.7 5,950,288 - CA265_RS24430 0.33 +0.9 5,950,463 + CA265_RS24430 0.62 -1.8 5,950,464 - CA265_RS24430 0.62 -0.4 5,950,482 + CA265_RS24430 0.65 +0.9 5,950,540 + CA265_RS24430 0.74 -0.2 5,950,541 - CA265_RS24430 0.74 +0.2 5,950,541 - CA265_RS24430 0.74 -0.5 5,950,543 - CA265_RS24430 0.75 +0.1 5,950,645 - +0.2 5,950,645 - -0.4 5,950,697 - +0.1 5,950,717 + +0.2 5,950,873 - -0.9 5,950,906 + +0.9 5,951,010 - -0.9 5,951,010 - -0.7 5,951,051 + +0.7 5,951,054 - -1.0 5,951,058 + -0.3 5,951,059 - +0.6 5,951,097 + CA265_RS24435 0.10 -1.7 5,951,168 - CA265_RS24435 0.14 -0.3 5,951,181 - CA265_RS24435 0.15 +1.1 5,951,181 - CA265_RS24435 0.15 +0.1 5,951,187 - CA265_RS24435 0.15 +0.1 5,951,187 - CA265_RS24435 0.15 -0.9 5,951,196 - CA265_RS24435 0.16 +0.9 5,951,228 - CA265_RS24435 0.17 +0.1 5,951,263 - CA265_RS24435 0.19 +1.2 5,951,277 - CA265_RS24435 0.20 +0.3 5,951,351 - CA265_RS24435 0.24 +0.5 5,951,402 - CA265_RS24435 0.27 -0.4 5,951,427 - CA265_RS24435 0.28 +1.2 5,951,465 - CA265_RS24435 0.30 -0.0 5,951,465 - CA265_RS24435 0.30 +1.0 5,951,531 - CA265_RS24435 0.33 -0.9 5,951,556 - CA265_RS24435 0.35 +0.9 5,951,560 - CA265_RS24435 0.35 +0.0 5,951,560 - CA265_RS24435 0.35 -0.7 5,951,641 - CA265_RS24435 0.39 +0.1 5,951,928 - CA265_RS24435 0.54 +0.1 5,951,928 - CA265_RS24435 0.54 +0.4 5,951,981 - CA265_RS24435 0.57 +0.1 5,951,981 - CA265_RS24435 0.57 -0.2 5,951,995 - CA265_RS24435 0.58 +0.8 5,952,076 - CA265_RS24435 0.62 +0.1 5,952,203 - CA265_RS24435 0.69 +0.6 5,952,306 - CA265_RS24435 0.74 -0.4 5,952,368 - CA265_RS24435 0.77 +0.6 5,952,368 - CA265_RS24435 0.77 +0.4 5,952,463 - CA265_RS24435 0.82 +0.9 5,952,508 - CA265_RS24435 0.85 -0.5 5,952,599 - CA265_RS24435 0.90 +0.4 5,952,610 - -0.9 5,952,610 - -0.7 5,952,628 - +0.0 5,952,628 - +0.0 5,952,628 - -0.1 5,952,671 - +0.0 5,952,699 - +1.3 5,952,699 - +0.0 5,952,699 - +0.9 5,952,699 - +0.4 5,952,723 - +0.5 5,952,884 + -0.0 5,952,940 - CA265_RS24440 0.13 +0.2 5,952,952 - CA265_RS24440 0.14 +0.6 5,952,957 + CA265_RS24440 0.14 +0.1 5,952,962 - CA265_RS24440 0.15 +0.6 5,953,051 + CA265_RS24440 0.23 +0.5 5,953,070 + CA265_RS24440 0.25 -1.2 5,953,070 + CA265_RS24440 0.25 +0.1 5,953,072 + CA265_RS24440 0.25 -0.8 5,953,072 + CA265_RS24440 0.25 -0.8 5,953,073 - CA265_RS24440 0.25 +0.6 5,953,092 - CA265_RS24440 0.27 -0.7 5,953,092 - CA265_RS24440 0.27 +0.3 5,953,100 + CA265_RS24440 0.28 +0.5 5,953,102 + CA265_RS24440 0.28 -0.7 5,953,139 + CA265_RS24440 0.32 -0.7 5,953,161 - CA265_RS24440 0.34 -0.0 5,953,187 - CA265_RS24440 0.36 -0.6 5,953,216 - CA265_RS24440 0.39 -0.4 5,953,229 + CA265_RS24440 0.40 +0.0 5,953,230 - CA265_RS24440 0.40 +0.5 5,953,258 + CA265_RS24440 0.43 +0.0 5,953,262 + +0.3 5,953,271 + CA265_RS24440 0.44 -0.2 5,953,281 + CA265_RS24440 0.45 +0.2 5,953,282 - CA265_RS24440 0.45 +0.5 5,953,282 - CA265_RS24440 0.45 +0.5 5,953,337 + CA265_RS24440 0.50 +0.5 5,953,338 - CA265_RS24440 0.51 -0.5 5,953,346 + CA265_RS24440 0.51 -0.2 5,953,380 - CA265_RS24440 0.55 +0.6 5,953,396 - CA265_RS24440 0.56 +0.7 5,953,396 - CA265_RS24440 0.56 -0.4 5,953,421 + CA265_RS24440 0.58 -0.0 5,953,431 + CA265_RS24440 0.59 -1.5 5,953,433 + CA265_RS24440 0.60 +0.2 5,953,534 - CA265_RS24440 0.69 -0.6 5,953,596 + CA265_RS24440 0.75 +1.0 5,953,597 - CA265_RS24440 0.75 -0.3 5,953,614 + CA265_RS24440 0.77 -0.4 5,953,756 + -0.0 5,953,770 + -0.5 5,953,773 - -0.7
Or see this region's nucleotide sequence