Experiment: R2A
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA265_RS24345 and CA265_RS24350 are separated by 178 nucleotides CA265_RS24350 and CA265_RS24355 are separated by 309 nucleotides CA265_RS24355 and CA265_RS24360 are separated by 6 nucleotides CA265_RS24360 and CA265_RS24365 are separated by 6 nucleotides CA265_RS24365 and CA265_RS24370 are separated by 49 nucleotides
CA265_RS24345: CA265_RS24345 - hypothetical protein, at 5,929,692 to 5,931,506
_RS24345
CA265_RS24350: CA265_RS24350 - hypothetical protein, at 5,931,685 to 5,931,981
_RS24350
CA265_RS24355: CA265_RS24355 - transcriptional regulator, at 5,932,291 to 5,932,614
_RS24355
CA265_RS24360: CA265_RS24360 - ATPase, at 5,932,621 to 5,933,088
_RS24360
CA265_RS24365: CA265_RS24365 - DoxX-like family protein, at 5,933,095 to 5,933,478
_RS24365
CA265_RS24370: CA265_RS24370 - hypothetical protein, at 5,933,528 to 5,934,112
_RS24370
Position (kb) 5932
5933 Strain fitness (log2 ratio) -2
-1
0
1 at 5931.299 kb on + strand, within CA265_RS24345 at 5931.300 kb on - strand, within CA265_RS24345 at 5931.308 kb on - strand, within CA265_RS24345 at 5931.308 kb on - strand, within CA265_RS24345 at 5931.318 kb on + strand, within CA265_RS24345 at 5931.318 kb on + strand, within CA265_RS24345 at 5931.319 kb on - strand, within CA265_RS24345 at 5931.319 kb on - strand, within CA265_RS24345 at 5931.321 kb on - strand, within CA265_RS24345 at 5931.440 kb on - strand at 5931.572 kb on + strand at 5931.598 kb on - strand at 5932.005 kb on + strand at 5932.006 kb on - strand at 5932.121 kb on + strand at 5932.121 kb on + strand at 5932.122 kb on - strand at 5932.127 kb on + strand at 5932.128 kb on - strand at 5932.182 kb on + strand at 5932.183 kb on - strand at 5932.310 kb on + strand at 5932.389 kb on - strand, within CA265_RS24355 at 5932.497 kb on + strand, within CA265_RS24355 at 5932.497 kb on + strand, within CA265_RS24355 at 5932.584 kb on + strand at 5932.584 kb on + strand at 5932.617 kb on + strand at 5932.617 kb on + strand at 5932.618 kb on - strand at 5932.717 kb on + strand, within CA265_RS24360 at 5932.718 kb on - strand, within CA265_RS24360 at 5932.783 kb on + strand, within CA265_RS24360 at 5932.793 kb on - strand, within CA265_RS24360 at 5932.851 kb on - strand, within CA265_RS24360 at 5932.851 kb on - strand, within CA265_RS24360 at 5932.888 kb on + strand, within CA265_RS24360 at 5932.962 kb on + strand, within CA265_RS24360 at 5933.016 kb on - strand, within CA265_RS24360 at 5933.041 kb on - strand, within CA265_RS24360 at 5933.081 kb on + strand at 5933.082 kb on - strand at 5933.115 kb on + strand at 5933.147 kb on + strand, within CA265_RS24365 at 5933.199 kb on - strand, within CA265_RS24365 at 5933.204 kb on + strand, within CA265_RS24365 at 5933.204 kb on + strand, within CA265_RS24365 at 5933.231 kb on - strand, within CA265_RS24365 at 5933.241 kb on + strand, within CA265_RS24365 at 5933.242 kb on - strand, within CA265_RS24365 at 5933.244 kb on - strand, within CA265_RS24365 at 5933.244 kb on - strand, within CA265_RS24365 at 5933.408 kb on + strand, within CA265_RS24365 at 5933.408 kb on + strand, within CA265_RS24365 at 5933.408 kb on + strand, within CA265_RS24365 at 5933.491 kb on + strand at 5933.492 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction R2A remove 5,931,299 + CA265_RS24345 0.89 -0.1 5,931,300 - CA265_RS24345 0.89 -0.9 5,931,308 - CA265_RS24345 0.89 +0.1 5,931,308 - CA265_RS24345 0.89 -0.3 5,931,318 + CA265_RS24345 0.90 +0.1 5,931,318 + CA265_RS24345 0.90 -0.6 5,931,319 - CA265_RS24345 0.90 +0.4 5,931,319 - CA265_RS24345 0.90 -0.2 5,931,321 - CA265_RS24345 0.90 -0.7 5,931,440 - -0.1 5,931,572 + -0.5 5,931,598 - -1.0 5,932,005 + +0.5 5,932,006 - -0.4 5,932,121 + +0.1 5,932,121 + +0.0 5,932,122 - -0.2 5,932,127 + -1.7 5,932,128 - +0.3 5,932,182 + -1.0 5,932,183 - +0.1 5,932,310 + +0.0 5,932,389 - CA265_RS24355 0.30 +0.5 5,932,497 + CA265_RS24355 0.64 +0.4 5,932,497 + CA265_RS24355 0.64 +0.5 5,932,584 + +0.1 5,932,584 + -0.2 5,932,617 + -0.7 5,932,617 + -0.3 5,932,618 - -0.0 5,932,717 + CA265_RS24360 0.21 +0.2 5,932,718 - CA265_RS24360 0.21 +0.4 5,932,783 + CA265_RS24360 0.35 +0.2 5,932,793 - CA265_RS24360 0.37 +0.4 5,932,851 - CA265_RS24360 0.49 +0.6 5,932,851 - CA265_RS24360 0.49 +1.0 5,932,888 + CA265_RS24360 0.57 +0.2 5,932,962 + CA265_RS24360 0.73 +0.2 5,933,016 - CA265_RS24360 0.84 +0.2 5,933,041 - CA265_RS24360 0.90 -2.0 5,933,081 + +1.3 5,933,082 - +1.0 5,933,115 + -1.1 5,933,147 + CA265_RS24365 0.14 -0.1 5,933,199 - CA265_RS24365 0.27 +0.3 5,933,204 + CA265_RS24365 0.28 -1.0 5,933,204 + CA265_RS24365 0.28 -0.6 5,933,231 - CA265_RS24365 0.35 -0.2 5,933,241 + CA265_RS24365 0.38 -0.7 5,933,242 - CA265_RS24365 0.38 -0.2 5,933,244 - CA265_RS24365 0.39 -0.3 5,933,244 - CA265_RS24365 0.39 +0.9 5,933,408 + CA265_RS24365 0.82 +0.1 5,933,408 + CA265_RS24365 0.82 +0.5 5,933,408 + CA265_RS24365 0.82 -1.6 5,933,491 + -0.6 5,933,492 - -0.6
Or see this region's nucleotide sequence