Experiment: R2A
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA265_RS22795 and CA265_RS22800 are separated by 132 nucleotides CA265_RS22800 and CA265_RS22805 are separated by 0 nucleotides CA265_RS22805 and CA265_RS22810 are separated by 56 nucleotides
CA265_RS22795: CA265_RS22795 - antibiotic ABC transporter ATP-binding protein, at 5,576,653 to 5,578,470
_RS22795
CA265_RS22800: CA265_RS22800 - glycosyl transferase, at 5,578,603 to 5,579,589
_RS22800
CA265_RS22805: CA265_RS22805 - glycosyl transferase, at 5,579,590 to 5,580,465
_RS22805
CA265_RS22810: CA265_RS22810 - methylmalonyl Co-A mutase-associated GTPase MeaB, at 5,580,522 to 5,581,415
_RS22810
Position (kb) 5578
5579
5580 Strain fitness (log2 ratio) -2
-1
0
1
2 at 5578.479 kb on - strand at 5578.493 kb on - strand at 5578.493 kb on - strand at 5578.533 kb on - strand at 5578.565 kb on + strand at 5578.644 kb on + strand at 5578.645 kb on - strand at 5578.654 kb on + strand at 5578.656 kb on + strand at 5578.698 kb on + strand at 5578.714 kb on - strand, within CA265_RS22800 at 5578.722 kb on + strand, within CA265_RS22800 at 5578.887 kb on - strand, within CA265_RS22800 at 5578.911 kb on + strand, within CA265_RS22800 at 5578.936 kb on + strand, within CA265_RS22800 at 5578.936 kb on + strand, within CA265_RS22800 at 5578.936 kb on + strand, within CA265_RS22800 at 5578.937 kb on - strand, within CA265_RS22800 at 5578.937 kb on - strand, within CA265_RS22800 at 5578.970 kb on + strand, within CA265_RS22800 at 5578.971 kb on - strand, within CA265_RS22800 at 5579.000 kb on - strand, within CA265_RS22800 at 5579.056 kb on + strand, within CA265_RS22800 at 5579.057 kb on - strand, within CA265_RS22800 at 5579.101 kb on + strand, within CA265_RS22800 at 5579.105 kb on + strand, within CA265_RS22800 at 5579.106 kb on - strand, within CA265_RS22800 at 5579.145 kb on - strand, within CA265_RS22800 at 5579.154 kb on + strand, within CA265_RS22800 at 5579.180 kb on + strand, within CA265_RS22800 at 5579.180 kb on + strand at 5579.181 kb on - strand, within CA265_RS22800 at 5579.185 kb on + strand, within CA265_RS22800 at 5579.253 kb on + strand, within CA265_RS22800 at 5579.253 kb on + strand, within CA265_RS22800 at 5579.254 kb on - strand, within CA265_RS22800 at 5579.266 kb on - strand, within CA265_RS22800 at 5579.270 kb on + strand, within CA265_RS22800 at 5579.309 kb on - strand, within CA265_RS22800 at 5579.333 kb on - strand, within CA265_RS22800 at 5579.333 kb on - strand, within CA265_RS22800 at 5579.411 kb on - strand, within CA265_RS22800 at 5579.467 kb on + strand, within CA265_RS22800 at 5579.468 kb on - strand, within CA265_RS22800 at 5579.468 kb on - strand, within CA265_RS22800 at 5579.554 kb on - strand at 5579.555 kb on + strand at 5579.555 kb on + strand at 5579.592 kb on - strand at 5579.592 kb on - strand at 5579.606 kb on + strand at 5579.607 kb on - strand at 5579.638 kb on + strand at 5579.796 kb on + strand, within CA265_RS22805 at 5579.801 kb on + strand, within CA265_RS22805 at 5579.874 kb on + strand, within CA265_RS22805 at 5579.874 kb on + strand, within CA265_RS22805 at 5579.881 kb on + strand, within CA265_RS22805 at 5579.882 kb on - strand, within CA265_RS22805 at 5579.910 kb on - strand, within CA265_RS22805 at 5579.921 kb on + strand, within CA265_RS22805 at 5579.921 kb on + strand, within CA265_RS22805 at 5580.062 kb on + strand, within CA265_RS22805 at 5580.062 kb on + strand, within CA265_RS22805 at 5580.062 kb on + strand, within CA265_RS22805 at 5580.089 kb on - strand, within CA265_RS22805 at 5580.095 kb on - strand, within CA265_RS22805 at 5580.155 kb on + strand, within CA265_RS22805 at 5580.155 kb on + strand, within CA265_RS22805 at 5580.188 kb on + strand, within CA265_RS22805 at 5580.295 kb on - strand, within CA265_RS22805 at 5580.307 kb on - strand, within CA265_RS22805 at 5580.366 kb on + strand, within CA265_RS22805 at 5580.385 kb on + strand at 5580.468 kb on + strand at 5580.468 kb on + strand at 5580.469 kb on - strand at 5580.497 kb on + strand at 5580.498 kb on - strand at 5580.503 kb on + strand at 5580.554 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction R2A remove 5,578,479 - -0.3 5,578,493 - -0.2 5,578,493 - -0.0 5,578,533 - -0.2 5,578,565 + -0.1 5,578,644 + +0.2 5,578,645 - +0.5 5,578,654 + -0.6 5,578,656 + -0.2 5,578,698 + +0.2 5,578,714 - CA265_RS22800 0.11 +0.5 5,578,722 + CA265_RS22800 0.12 -0.5 5,578,887 - CA265_RS22800 0.29 -0.5 5,578,911 + CA265_RS22800 0.31 +0.3 5,578,936 + CA265_RS22800 0.34 -0.5 5,578,936 + CA265_RS22800 0.34 +0.5 5,578,936 + CA265_RS22800 0.34 -1.3 5,578,937 - CA265_RS22800 0.34 -0.3 5,578,937 - CA265_RS22800 0.34 +0.4 5,578,970 + CA265_RS22800 0.37 +1.0 5,578,971 - CA265_RS22800 0.37 +1.7 5,579,000 - CA265_RS22800 0.40 +1.3 5,579,056 + CA265_RS22800 0.46 +0.1 5,579,057 - CA265_RS22800 0.46 -0.9 5,579,101 + CA265_RS22800 0.50 +0.1 5,579,105 + CA265_RS22800 0.51 +0.3 5,579,106 - CA265_RS22800 0.51 +2.1 5,579,145 - CA265_RS22800 0.55 -0.1 5,579,154 + CA265_RS22800 0.56 +0.5 5,579,180 + CA265_RS22800 0.58 +0.3 5,579,180 + +2.1 5,579,181 - CA265_RS22800 0.59 +0.6 5,579,185 + CA265_RS22800 0.59 +0.1 5,579,253 + CA265_RS22800 0.66 +0.1 5,579,253 + CA265_RS22800 0.66 +0.4 5,579,254 - CA265_RS22800 0.66 +0.7 5,579,266 - CA265_RS22800 0.67 +0.1 5,579,270 + CA265_RS22800 0.68 +0.5 5,579,309 - CA265_RS22800 0.72 +0.6 5,579,333 - CA265_RS22800 0.74 -0.5 5,579,333 - CA265_RS22800 0.74 -0.1 5,579,411 - CA265_RS22800 0.82 -1.5 5,579,467 + CA265_RS22800 0.88 +0.3 5,579,468 - CA265_RS22800 0.88 +2.6 5,579,468 - CA265_RS22800 0.88 +0.1 5,579,554 - +0.1 5,579,555 + -0.0 5,579,555 + -0.2 5,579,592 - +0.8 5,579,592 - -0.0 5,579,606 + +0.4 5,579,607 - +0.2 5,579,638 + +0.7 5,579,796 + CA265_RS22805 0.24 +0.6 5,579,801 + CA265_RS22805 0.24 -0.3 5,579,874 + CA265_RS22805 0.32 -0.1 5,579,874 + CA265_RS22805 0.32 +0.2 5,579,881 + CA265_RS22805 0.33 +0.8 5,579,882 - CA265_RS22805 0.33 +0.5 5,579,910 - CA265_RS22805 0.37 -1.0 5,579,921 + CA265_RS22805 0.38 -0.1 5,579,921 + CA265_RS22805 0.38 +0.2 5,580,062 + CA265_RS22805 0.54 +0.7 5,580,062 + CA265_RS22805 0.54 +0.3 5,580,062 + CA265_RS22805 0.54 +0.7 5,580,089 - CA265_RS22805 0.57 -0.6 5,580,095 - CA265_RS22805 0.58 +0.2 5,580,155 + CA265_RS22805 0.64 -0.2 5,580,155 + CA265_RS22805 0.64 +0.5 5,580,188 + CA265_RS22805 0.68 -0.0 5,580,295 - CA265_RS22805 0.80 -0.5 5,580,307 - CA265_RS22805 0.82 -0.5 5,580,366 + CA265_RS22805 0.89 -0.5 5,580,385 + +0.1 5,580,468 + +0.2 5,580,468 + -2.0 5,580,469 - +0.1 5,580,497 + +0.9 5,580,498 - +0.3 5,580,503 + -0.0 5,580,554 - -0.6
Or see this region's nucleotide sequence