Experiment: R2A
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA265_RS22740 and CA265_RS22745 are separated by 29 nucleotides CA265_RS22745 and CA265_RS22750 are separated by 122 nucleotides CA265_RS22750 and CA265_RS22755 are separated by 1 nucleotides
CA265_RS22740: CA265_RS22740 - translation initiation factor IF-2, at 5,564,089 to 5,567,187
_RS22740
CA265_RS22745: CA265_RS22745 - hypothetical protein, at 5,567,217 to 5,567,471
_RS22745
CA265_RS22750: CA265_RS22750 - hypothetical protein, at 5,567,594 to 5,567,872
_RS22750
CA265_RS22755: CA265_RS22755 - hypothetical protein, at 5,567,874 to 5,569,202
_RS22755
Position (kb) 5567
5568 Strain fitness (log2 ratio) -2
-1
0
1 at 5567.171 kb on + strand at 5567.210 kb on - strand at 5567.225 kb on - strand at 5567.301 kb on + strand, within CA265_RS22745 at 5567.311 kb on - strand, within CA265_RS22745 at 5567.311 kb on - strand, within CA265_RS22745 at 5567.349 kb on + strand, within CA265_RS22745 at 5567.398 kb on - strand, within CA265_RS22745 at 5567.410 kb on + strand, within CA265_RS22745 at 5567.411 kb on - strand, within CA265_RS22745 at 5567.411 kb on - strand, within CA265_RS22745 at 5567.421 kb on - strand, within CA265_RS22745 at 5567.423 kb on - strand, within CA265_RS22745 at 5567.432 kb on + strand, within CA265_RS22745 at 5567.460 kb on + strand at 5567.461 kb on - strand at 5567.462 kb on + strand at 5567.502 kb on - strand at 5567.516 kb on - strand at 5567.535 kb on - strand at 5567.628 kb on + strand, within CA265_RS22750 at 5567.665 kb on + strand, within CA265_RS22750 at 5567.666 kb on - strand, within CA265_RS22750 at 5567.691 kb on + strand, within CA265_RS22750 at 5567.701 kb on - strand, within CA265_RS22750 at 5567.748 kb on + strand, within CA265_RS22750 at 5567.749 kb on - strand, within CA265_RS22750 at 5567.756 kb on - strand, within CA265_RS22750 at 5567.780 kb on - strand, within CA265_RS22750 at 5567.839 kb on - strand, within CA265_RS22750 at 5567.846 kb on - strand at 5567.849 kb on + strand at 5567.850 kb on - strand at 5567.900 kb on + strand at 5567.911 kb on + strand at 5568.046 kb on + strand, within CA265_RS22755 at 5568.090 kb on - strand, within CA265_RS22755 at 5568.090 kb on - strand, within CA265_RS22755 at 5568.162 kb on - strand, within CA265_RS22755 at 5568.180 kb on - strand, within CA265_RS22755 at 5568.228 kb on - strand, within CA265_RS22755 at 5568.268 kb on + strand, within CA265_RS22755 at 5568.268 kb on + strand, within CA265_RS22755 at 5568.438 kb on - strand, within CA265_RS22755
Per-strain Table
Position Strand Gene LocusTag Fraction R2A remove 5,567,171 + -2.1 5,567,210 - +0.4 5,567,225 - -0.1 5,567,301 + CA265_RS22745 0.33 +0.1 5,567,311 - CA265_RS22745 0.37 -0.5 5,567,311 - CA265_RS22745 0.37 +0.4 5,567,349 + CA265_RS22745 0.52 +0.5 5,567,398 - CA265_RS22745 0.71 +1.2 5,567,410 + CA265_RS22745 0.76 +0.7 5,567,411 - CA265_RS22745 0.76 +0.9 5,567,411 - CA265_RS22745 0.76 +0.3 5,567,421 - CA265_RS22745 0.80 +0.3 5,567,423 - CA265_RS22745 0.81 -0.5 5,567,432 + CA265_RS22745 0.84 -2.0 5,567,460 + +0.1 5,567,461 - -0.5 5,567,462 + -0.5 5,567,502 - +0.1 5,567,516 - +0.2 5,567,535 - +0.1 5,567,628 + CA265_RS22750 0.12 +1.0 5,567,665 + CA265_RS22750 0.25 -0.2 5,567,666 - CA265_RS22750 0.26 -0.8 5,567,691 + CA265_RS22750 0.35 -0.1 5,567,701 - CA265_RS22750 0.38 -0.6 5,567,748 + CA265_RS22750 0.55 +0.3 5,567,749 - CA265_RS22750 0.56 +0.3 5,567,756 - CA265_RS22750 0.58 +0.5 5,567,780 - CA265_RS22750 0.67 +0.1 5,567,839 - CA265_RS22750 0.88 +1.0 5,567,846 - +0.1 5,567,849 + +0.3 5,567,850 - +0.4 5,567,900 + +0.2 5,567,911 + -1.0 5,568,046 + CA265_RS22755 0.13 -0.0 5,568,090 - CA265_RS22755 0.16 -0.3 5,568,090 - CA265_RS22755 0.16 +0.2 5,568,162 - CA265_RS22755 0.22 +0.7 5,568,180 - CA265_RS22755 0.23 +1.0 5,568,228 - CA265_RS22755 0.27 +0.6 5,568,268 + CA265_RS22755 0.30 -0.5 5,568,268 + CA265_RS22755 0.30 -0.7 5,568,438 - CA265_RS22755 0.42 -1.0
Or see this region's nucleotide sequence