Experiment: R2A
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA265_RS22300 and CA265_RS22305 are separated by 116 nucleotides CA265_RS22305 and CA265_RS22310 are separated by 121 nucleotides CA265_RS22310 and CA265_RS22315 are separated by 192 nucleotides
CA265_RS22300: CA265_RS22300 - EamA family transporter, at 5,477,809 to 5,478,660
_RS22300
CA265_RS22305: CA265_RS22305 - hypothetical protein, at 5,478,777 to 5,479,124
_RS22305
CA265_RS22310: CA265_RS22310 - superoxide dismutase, at 5,479,246 to 5,479,776
_RS22310
CA265_RS22315: CA265_RS22315 - hypothetical protein, at 5,479,969 to 5,480,502
_RS22315
Position (kb) 5479
5480 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 5478.252 kb on + strand, within CA265_RS22300 at 5478.295 kb on + strand, within CA265_RS22300 at 5478.397 kb on + strand at 5478.397 kb on + strand, within CA265_RS22300 at 5478.407 kb on + strand, within CA265_RS22300 at 5478.408 kb on - strand, within CA265_RS22300 at 5478.412 kb on + strand, within CA265_RS22300 at 5478.476 kb on - strand, within CA265_RS22300 at 5478.496 kb on - strand, within CA265_RS22300 at 5478.523 kb on + strand, within CA265_RS22300 at 5478.523 kb on + strand, within CA265_RS22300 at 5478.602 kb on - strand at 5478.613 kb on - strand at 5478.619 kb on + strand at 5478.643 kb on - strand at 5478.643 kb on - strand at 5478.879 kb on + strand, within CA265_RS22305 at 5478.879 kb on + strand, within CA265_RS22305 at 5478.883 kb on - strand, within CA265_RS22305 at 5478.920 kb on - strand, within CA265_RS22305 at 5478.922 kb on - strand, within CA265_RS22305 at 5478.982 kb on - strand, within CA265_RS22305 at 5479.124 kb on + strand at 5479.125 kb on - strand at 5479.125 kb on - strand at 5479.125 kb on - strand at 5479.128 kb on + strand at 5479.128 kb on + strand at 5479.130 kb on + strand at 5479.143 kb on - strand at 5479.232 kb on + strand at 5479.268 kb on + strand at 5479.272 kb on + strand at 5479.274 kb on + strand at 5479.449 kb on + strand, within CA265_RS22310 at 5479.449 kb on + strand, within CA265_RS22310 at 5479.450 kb on - strand, within CA265_RS22310 at 5479.450 kb on - strand, within CA265_RS22310 at 5479.450 kb on - strand, within CA265_RS22310 at 5479.575 kb on + strand at 5479.592 kb on + strand, within CA265_RS22310 at 5479.593 kb on - strand, within CA265_RS22310 at 5479.611 kb on + strand at 5479.689 kb on - strand, within CA265_RS22310 at 5479.689 kb on - strand, within CA265_RS22310 at 5479.708 kb on + strand, within CA265_RS22310 at 5479.710 kb on + strand, within CA265_RS22310 at 5479.711 kb on - strand, within CA265_RS22310 at 5479.774 kb on + strand at 5479.779 kb on + strand at 5479.783 kb on + strand at 5479.803 kb on + strand at 5479.803 kb on + strand at 5479.979 kb on + strand at 5480.040 kb on - strand, within CA265_RS22315 at 5480.072 kb on + strand, within CA265_RS22315 at 5480.075 kb on + strand, within CA265_RS22315 at 5480.080 kb on - strand, within CA265_RS22315 at 5480.161 kb on - strand, within CA265_RS22315 at 5480.161 kb on - strand, within CA265_RS22315 at 5480.215 kb on + strand, within CA265_RS22315 at 5480.241 kb on - strand, within CA265_RS22315 at 5480.253 kb on + strand, within CA265_RS22315 at 5480.331 kb on + strand, within CA265_RS22315 at 5480.345 kb on - strand, within CA265_RS22315 at 5480.402 kb on + strand, within CA265_RS22315 at 5480.438 kb on - strand, within CA265_RS22315 at 5480.457 kb on + strand at 5480.458 kb on - strand at 5480.588 kb on - strand at 5480.660 kb on - strand at 5480.660 kb on - strand at 5480.708 kb on + strand at 5480.709 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction R2A remove 5,478,252 + CA265_RS22300 0.52 -0.9 5,478,295 + CA265_RS22300 0.57 +0.3 5,478,397 + -0.2 5,478,397 + CA265_RS22300 0.69 -0.8 5,478,407 + CA265_RS22300 0.70 -0.4 5,478,408 - CA265_RS22300 0.70 -0.6 5,478,412 + CA265_RS22300 0.71 -1.1 5,478,476 - CA265_RS22300 0.78 -0.5 5,478,496 - CA265_RS22300 0.81 -0.1 5,478,523 + CA265_RS22300 0.84 -0.2 5,478,523 + CA265_RS22300 0.84 +0.9 5,478,602 - -1.1 5,478,613 - -0.7 5,478,619 + -1.8 5,478,643 - -0.7 5,478,643 - +0.6 5,478,879 + CA265_RS22305 0.29 -0.2 5,478,879 + CA265_RS22305 0.29 -1.1 5,478,883 - CA265_RS22305 0.30 -0.8 5,478,920 - CA265_RS22305 0.41 -0.5 5,478,922 - CA265_RS22305 0.42 -0.6 5,478,982 - CA265_RS22305 0.59 +0.2 5,479,124 + -0.1 5,479,125 - +0.0 5,479,125 - -0.2 5,479,125 - -0.5 5,479,128 + -0.8 5,479,128 + -0.2 5,479,130 + -0.1 5,479,143 - -0.4 5,479,232 + +0.3 5,479,268 + +0.3 5,479,272 + +0.2 5,479,274 + +1.0 5,479,449 + CA265_RS22310 0.38 -0.6 5,479,449 + CA265_RS22310 0.38 +0.3 5,479,450 - CA265_RS22310 0.38 +0.6 5,479,450 - CA265_RS22310 0.38 +0.9 5,479,450 - CA265_RS22310 0.38 +0.2 5,479,575 + +2.1 5,479,592 + CA265_RS22310 0.65 -1.5 5,479,593 - CA265_RS22310 0.65 +0.9 5,479,611 + +3.7 5,479,689 - CA265_RS22310 0.83 +0.5 5,479,689 - CA265_RS22310 0.83 +0.1 5,479,708 + CA265_RS22310 0.87 +0.7 5,479,710 + CA265_RS22310 0.87 +0.6 5,479,711 - CA265_RS22310 0.88 -0.2 5,479,774 + +0.3 5,479,779 + +0.9 5,479,783 + -0.2 5,479,803 + -0.9 5,479,803 + -0.6 5,479,979 + -0.5 5,480,040 - CA265_RS22315 0.13 -0.1 5,480,072 + CA265_RS22315 0.19 -0.0 5,480,075 + CA265_RS22315 0.20 -0.6 5,480,080 - CA265_RS22315 0.21 +0.1 5,480,161 - CA265_RS22315 0.36 +0.5 5,480,161 - CA265_RS22315 0.36 -1.0 5,480,215 + CA265_RS22315 0.46 -0.3 5,480,241 - CA265_RS22315 0.51 +1.0 5,480,253 + CA265_RS22315 0.53 +0.2 5,480,331 + CA265_RS22315 0.68 -0.3 5,480,345 - CA265_RS22315 0.70 -0.7 5,480,402 + CA265_RS22315 0.81 -0.9 5,480,438 - CA265_RS22315 0.88 +1.0 5,480,457 + -0.8 5,480,458 - -0.3 5,480,588 - -1.6 5,480,660 - +0.9 5,480,660 - +0.1 5,480,708 + +0.8 5,480,709 - -0.3
Or see this region's nucleotide sequence