Experiment: R2A
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA265_RS21935 and CA265_RS21940 are separated by 27 nucleotides CA265_RS21940 and CA265_RS21945 are separated by 37 nucleotides
CA265_RS21935: CA265_RS21935 - SusC/RagA family TonB-linked outer membrane protein, at 5,391,076 to 5,394,177
_RS21935
CA265_RS21940: CA265_RS21940 - RagB/SusD family protein, at 5,394,205 to 5,395,500
_RS21940
CA265_RS21945: CA265_RS21945 - DeoR family transcriptional regulator, at 5,395,538 to 5,396,284
_RS21945
Position (kb) 5394
5395
5396 Strain fitness (log2 ratio) -1
0
1
2 at 5393.232 kb on + strand, within CA265_RS21935 at 5393.236 kb on - strand, within CA265_RS21935 at 5393.283 kb on + strand, within CA265_RS21935 at 5393.284 kb on - strand, within CA265_RS21935 at 5393.284 kb on - strand, within CA265_RS21935 at 5393.284 kb on - strand, within CA265_RS21935 at 5393.307 kb on - strand, within CA265_RS21935 at 5393.324 kb on - strand, within CA265_RS21935 at 5393.349 kb on - strand, within CA265_RS21935 at 5393.425 kb on - strand, within CA265_RS21935 at 5393.425 kb on - strand, within CA265_RS21935 at 5393.438 kb on + strand, within CA265_RS21935 at 5393.439 kb on - strand, within CA265_RS21935 at 5393.614 kb on + strand, within CA265_RS21935 at 5393.614 kb on + strand, within CA265_RS21935 at 5393.615 kb on - strand, within CA265_RS21935 at 5393.661 kb on + strand, within CA265_RS21935 at 5393.734 kb on - strand, within CA265_RS21935 at 5393.813 kb on + strand, within CA265_RS21935 at 5393.814 kb on - strand, within CA265_RS21935 at 5393.814 kb on - strand, within CA265_RS21935 at 5393.846 kb on + strand, within CA265_RS21935 at 5393.847 kb on - strand, within CA265_RS21935 at 5393.850 kb on + strand, within CA265_RS21935 at 5393.851 kb on - strand, within CA265_RS21935 at 5393.900 kb on - strand at 5393.915 kb on - strand at 5393.915 kb on - strand at 5393.915 kb on - strand at 5393.916 kb on + strand at 5393.916 kb on + strand at 5393.916 kb on + strand at 5393.916 kb on + strand at 5393.917 kb on - strand at 5393.981 kb on - strand at 5393.997 kb on - strand at 5394.016 kb on - strand at 5394.024 kb on + strand at 5394.024 kb on + strand at 5394.058 kb on + strand at 5394.058 kb on + strand at 5394.059 kb on - strand at 5394.059 kb on - strand at 5394.060 kb on + strand at 5394.067 kb on + strand at 5394.080 kb on + strand at 5394.169 kb on - strand at 5394.198 kb on + strand at 5394.286 kb on + strand at 5394.287 kb on - strand at 5394.298 kb on - strand at 5394.401 kb on - strand, within CA265_RS21940 at 5394.411 kb on + strand, within CA265_RS21940 at 5394.426 kb on + strand, within CA265_RS21940 at 5394.440 kb on + strand, within CA265_RS21940 at 5394.501 kb on - strand, within CA265_RS21940 at 5394.501 kb on - strand, within CA265_RS21940 at 5394.525 kb on - strand, within CA265_RS21940 at 5394.556 kb on + strand, within CA265_RS21940 at 5394.580 kb on - strand, within CA265_RS21940 at 5394.620 kb on + strand, within CA265_RS21940 at 5394.642 kb on + strand, within CA265_RS21940 at 5394.660 kb on + strand, within CA265_RS21940 at 5394.717 kb on + strand, within CA265_RS21940 at 5394.718 kb on - strand, within CA265_RS21940 at 5394.748 kb on - strand, within CA265_RS21940 at 5394.756 kb on + strand, within CA265_RS21940 at 5394.756 kb on + strand, within CA265_RS21940 at 5394.756 kb on + strand, within CA265_RS21940 at 5394.757 kb on - strand, within CA265_RS21940 at 5394.757 kb on - strand, within CA265_RS21940 at 5394.762 kb on + strand, within CA265_RS21940 at 5394.762 kb on + strand, within CA265_RS21940 at 5394.762 kb on + strand, within CA265_RS21940 at 5394.830 kb on + strand, within CA265_RS21940 at 5394.830 kb on + strand, within CA265_RS21940 at 5394.927 kb on - strand, within CA265_RS21940 at 5394.993 kb on + strand, within CA265_RS21940 at 5394.994 kb on - strand, within CA265_RS21940 at 5394.994 kb on - strand, within CA265_RS21940 at 5394.996 kb on + strand, within CA265_RS21940 at 5395.047 kb on + strand, within CA265_RS21940 at 5395.047 kb on + strand, within CA265_RS21940 at 5395.047 kb on + strand, within CA265_RS21940 at 5395.095 kb on + strand, within CA265_RS21940 at 5395.103 kb on + strand, within CA265_RS21940 at 5395.104 kb on - strand, within CA265_RS21940 at 5395.104 kb on - strand, within CA265_RS21940 at 5395.128 kb on + strand, within CA265_RS21940 at 5395.190 kb on - strand, within CA265_RS21940 at 5395.263 kb on + strand, within CA265_RS21940 at 5395.264 kb on - strand, within CA265_RS21940 at 5395.313 kb on - strand, within CA265_RS21940 at 5395.313 kb on - strand, within CA265_RS21940 at 5395.314 kb on + strand, within CA265_RS21940 at 5395.315 kb on - strand, within CA265_RS21940 at 5395.315 kb on - strand, within CA265_RS21940 at 5395.343 kb on - strand, within CA265_RS21940 at 5395.392 kb on + strand at 5395.393 kb on - strand at 5395.393 kb on - strand at 5395.445 kb on - strand at 5395.465 kb on - strand at 5395.471 kb on - strand at 5395.590 kb on - strand at 5395.611 kb on + strand at 5395.611 kb on + strand at 5395.611 kb on + strand at 5395.612 kb on - strand at 5395.616 kb on + strand, within CA265_RS21945 at 5395.616 kb on + strand, within CA265_RS21945 at 5395.617 kb on - strand, within CA265_RS21945 at 5395.726 kb on + strand, within CA265_RS21945 at 5395.791 kb on - strand, within CA265_RS21945 at 5395.801 kb on + strand, within CA265_RS21945 at 5395.819 kb on + strand, within CA265_RS21945 at 5395.836 kb on + strand, within CA265_RS21945 at 5395.842 kb on - strand, within CA265_RS21945 at 5395.875 kb on - strand, within CA265_RS21945 at 5395.888 kb on + strand, within CA265_RS21945 at 5395.928 kb on - strand, within CA265_RS21945 at 5395.979 kb on + strand, within CA265_RS21945 at 5396.062 kb on + strand, within CA265_RS21945 at 5396.074 kb on - strand, within CA265_RS21945 at 5396.075 kb on + strand, within CA265_RS21945 at 5396.076 kb on - strand, within CA265_RS21945 at 5396.080 kb on + strand, within CA265_RS21945 at 5396.081 kb on - strand, within CA265_RS21945 at 5396.098 kb on + strand, within CA265_RS21945 at 5396.198 kb on - strand, within CA265_RS21945 at 5396.285 kb on - strand at 5396.381 kb on + strand at 5396.396 kb on + strand at 5396.494 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction R2A remove 5,393,232 + CA265_RS21935 0.70 -0.6 5,393,236 - CA265_RS21935 0.70 -0.6 5,393,283 + CA265_RS21935 0.71 -0.4 5,393,284 - CA265_RS21935 0.71 +1.7 5,393,284 - CA265_RS21935 0.71 -0.4 5,393,284 - CA265_RS21935 0.71 +0.5 5,393,307 - CA265_RS21935 0.72 +1.0 5,393,324 - CA265_RS21935 0.72 -0.2 5,393,349 - CA265_RS21935 0.73 +0.3 5,393,425 - CA265_RS21935 0.76 +0.1 5,393,425 - CA265_RS21935 0.76 -1.0 5,393,438 + CA265_RS21935 0.76 +0.9 5,393,439 - CA265_RS21935 0.76 +0.1 5,393,614 + CA265_RS21935 0.82 +0.5 5,393,614 + CA265_RS21935 0.82 -0.1 5,393,615 - CA265_RS21935 0.82 +0.6 5,393,661 + CA265_RS21935 0.83 -1.6 5,393,734 - CA265_RS21935 0.86 +0.3 5,393,813 + CA265_RS21935 0.88 -0.7 5,393,814 - CA265_RS21935 0.88 -0.7 5,393,814 - CA265_RS21935 0.88 -0.6 5,393,846 + CA265_RS21935 0.89 +1.1 5,393,847 - CA265_RS21935 0.89 -0.6 5,393,850 + CA265_RS21935 0.89 +0.9 5,393,851 - CA265_RS21935 0.89 +0.1 5,393,900 - -0.1 5,393,915 - +0.2 5,393,915 - +1.3 5,393,915 - -0.2 5,393,916 + -0.2 5,393,916 + -0.4 5,393,916 + +0.3 5,393,916 + +1.8 5,393,917 - -0.2 5,393,981 - +0.3 5,393,997 - -0.4 5,394,016 - +0.2 5,394,024 + +0.6 5,394,024 + -0.3 5,394,058 + -1.6 5,394,058 + -0.9 5,394,059 - +0.3 5,394,059 - -0.7 5,394,060 + -0.2 5,394,067 + +1.1 5,394,080 + -0.1 5,394,169 - +0.9 5,394,198 + -0.4 5,394,286 + +0.2 5,394,287 - +0.2 5,394,298 - +0.3 5,394,401 - CA265_RS21940 0.15 +0.5 5,394,411 + CA265_RS21940 0.16 -1.1 5,394,426 + CA265_RS21940 0.17 +0.8 5,394,440 + CA265_RS21940 0.18 +0.0 5,394,501 - CA265_RS21940 0.23 -1.4 5,394,501 - CA265_RS21940 0.23 +0.7 5,394,525 - CA265_RS21940 0.25 +0.1 5,394,556 + CA265_RS21940 0.27 +1.9 5,394,580 - CA265_RS21940 0.29 -0.7 5,394,620 + CA265_RS21940 0.32 -0.2 5,394,642 + CA265_RS21940 0.34 +0.1 5,394,660 + CA265_RS21940 0.35 +1.4 5,394,717 + CA265_RS21940 0.40 +0.3 5,394,718 - CA265_RS21940 0.40 +0.3 5,394,748 - CA265_RS21940 0.42 +0.6 5,394,756 + CA265_RS21940 0.43 +0.1 5,394,756 + CA265_RS21940 0.43 -0.2 5,394,756 + CA265_RS21940 0.43 +0.7 5,394,757 - CA265_RS21940 0.43 -1.2 5,394,757 - CA265_RS21940 0.43 +0.5 5,394,762 + CA265_RS21940 0.43 -0.2 5,394,762 + CA265_RS21940 0.43 -1.6 5,394,762 + CA265_RS21940 0.43 +0.0 5,394,830 + CA265_RS21940 0.48 -0.0 5,394,830 + CA265_RS21940 0.48 -1.0 5,394,927 - CA265_RS21940 0.56 +0.8 5,394,993 + CA265_RS21940 0.61 -0.6 5,394,994 - CA265_RS21940 0.61 +0.6 5,394,994 - CA265_RS21940 0.61 +0.1 5,394,996 + CA265_RS21940 0.61 +0.5 5,395,047 + CA265_RS21940 0.65 -0.2 5,395,047 + CA265_RS21940 0.65 -0.3 5,395,047 + CA265_RS21940 0.65 -0.3 5,395,095 + CA265_RS21940 0.69 +0.3 5,395,103 + CA265_RS21940 0.69 +0.0 5,395,104 - CA265_RS21940 0.69 +1.0 5,395,104 - CA265_RS21940 0.69 +0.2 5,395,128 + CA265_RS21940 0.71 -0.2 5,395,190 - CA265_RS21940 0.76 +0.4 5,395,263 + CA265_RS21940 0.82 -0.6 5,395,264 - CA265_RS21940 0.82 +1.8 5,395,313 - CA265_RS21940 0.85 +0.3 5,395,313 - CA265_RS21940 0.85 +0.1 5,395,314 + CA265_RS21940 0.86 -0.5 5,395,315 - CA265_RS21940 0.86 +0.9 5,395,315 - CA265_RS21940 0.86 +0.6 5,395,343 - CA265_RS21940 0.88 +0.9 5,395,392 + -0.6 5,395,393 - +1.5 5,395,393 - -0.4 5,395,445 - +0.3 5,395,465 - -0.6 5,395,471 - -0.6 5,395,590 - +0.1 5,395,611 + +0.3 5,395,611 + +0.1 5,395,611 + +0.3 5,395,612 - +0.5 5,395,616 + CA265_RS21945 0.10 -0.6 5,395,616 + CA265_RS21945 0.10 +0.4 5,395,617 - CA265_RS21945 0.11 -0.2 5,395,726 + CA265_RS21945 0.25 +0.3 5,395,791 - CA265_RS21945 0.34 -0.9 5,395,801 + CA265_RS21945 0.35 +0.1 5,395,819 + CA265_RS21945 0.38 +1.0 5,395,836 + CA265_RS21945 0.40 -0.5 5,395,842 - CA265_RS21945 0.41 -0.8 5,395,875 - CA265_RS21945 0.45 -0.3 5,395,888 + CA265_RS21945 0.47 -0.7 5,395,928 - CA265_RS21945 0.52 +0.6 5,395,979 + CA265_RS21945 0.59 -0.5 5,396,062 + CA265_RS21945 0.70 +0.0 5,396,074 - CA265_RS21945 0.72 +0.5 5,396,075 + CA265_RS21945 0.72 -0.2 5,396,076 - CA265_RS21945 0.72 +0.6 5,396,080 + CA265_RS21945 0.73 +0.2 5,396,081 - CA265_RS21945 0.73 +0.9 5,396,098 + CA265_RS21945 0.75 -1.2 5,396,198 - CA265_RS21945 0.88 +1.1 5,396,285 - +0.0 5,396,381 + +2.1 5,396,396 + -0.3 5,396,494 + -0.1
Or see this region's nucleotide sequence