Strain Fitness in Pedobacter sp. GW460-11-11-14-LB5 around CA265_RS21775

Experiment: R2A

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA265_RS21770 and CA265_RS21775 are separated by 149 nucleotidesCA265_RS21775 and CA265_RS21780 are separated by 337 nucleotides CA265_RS21770: CA265_RS21770 - ATP-dependent RNA helicase, at 5,348,876 to 5,350,048 _RS21770 CA265_RS21775: CA265_RS21775 - transporter, at 5,350,198 to 5,351,109 _RS21775 CA265_RS21780: CA265_RS21780 - aminopeptidase, at 5,351,447 to 5,352,640 _RS21780 Position (kb) 5350 5351 5352Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 5349.199 kb on - strand, within CA265_RS21770at 5349.208 kb on + strand, within CA265_RS21770at 5349.208 kb on + strand, within CA265_RS21770at 5349.240 kb on + strand, within CA265_RS21770at 5349.329 kb on - strand, within CA265_RS21770at 5349.332 kb on - strand, within CA265_RS21770at 5349.343 kb on + strand, within CA265_RS21770at 5349.344 kb on - strand, within CA265_RS21770at 5349.344 kb on - strand, within CA265_RS21770at 5349.410 kb on - strand, within CA265_RS21770at 5349.461 kb on - strand, within CA265_RS21770at 5349.477 kb on + strand, within CA265_RS21770at 5349.478 kb on - strand, within CA265_RS21770at 5349.552 kb on - strand, within CA265_RS21770at 5349.552 kb on - strand, within CA265_RS21770at 5349.553 kb on + strand, within CA265_RS21770at 5349.554 kb on - strand, within CA265_RS21770at 5349.554 kb on - strand, within CA265_RS21770at 5349.592 kb on - strand, within CA265_RS21770at 5349.600 kb on + strand, within CA265_RS21770at 5349.601 kb on - strand, within CA265_RS21770at 5349.677 kb on - strand, within CA265_RS21770at 5349.677 kb on - strand, within CA265_RS21770at 5349.730 kb on - strand, within CA265_RS21770at 5349.776 kb on + strand, within CA265_RS21770at 5349.777 kb on - strand, within CA265_RS21770at 5349.807 kb on + strand, within CA265_RS21770at 5349.807 kb on + strand, within CA265_RS21770at 5349.808 kb on - strand, within CA265_RS21770at 5349.854 kb on - strand, within CA265_RS21770at 5349.856 kb on + strand, within CA265_RS21770at 5349.857 kb on - strand, within CA265_RS21770at 5349.857 kb on - strand, within CA265_RS21770at 5349.906 kb on + strand, within CA265_RS21770at 5349.907 kb on - strand, within CA265_RS21770at 5349.948 kb on + strandat 5349.948 kb on + strandat 5349.949 kb on - strandat 5349.964 kb on + strandat 5349.994 kb on + strandat 5349.995 kb on - strandat 5350.064 kb on + strandat 5350.158 kb on + strandat 5350.159 kb on - strandat 5350.181 kb on - strandat 5350.192 kb on - strandat 5350.192 kb on - strandat 5350.192 kb on - strandat 5350.215 kb on + strandat 5350.302 kb on + strand, within CA265_RS21775at 5350.307 kb on - strand, within CA265_RS21775at 5350.350 kb on + strand, within CA265_RS21775at 5350.351 kb on - strand, within CA265_RS21775at 5350.367 kb on + strand, within CA265_RS21775at 5350.368 kb on - strand, within CA265_RS21775at 5350.430 kb on - strand, within CA265_RS21775at 5350.447 kb on - strand, within CA265_RS21775at 5350.453 kb on - strand, within CA265_RS21775at 5350.495 kb on - strand, within CA265_RS21775at 5350.508 kb on + strand, within CA265_RS21775at 5350.556 kb on + strand, within CA265_RS21775at 5350.557 kb on - strand, within CA265_RS21775at 5350.557 kb on - strand, within CA265_RS21775at 5350.725 kb on + strand, within CA265_RS21775at 5350.805 kb on + strand, within CA265_RS21775at 5350.864 kb on + strand, within CA265_RS21775at 5350.864 kb on + strand, within CA265_RS21775at 5350.914 kb on - strand, within CA265_RS21775at 5350.960 kb on - strand, within CA265_RS21775at 5350.971 kb on - strand, within CA265_RS21775at 5351.008 kb on - strand, within CA265_RS21775at 5351.072 kb on + strandat 5351.124 kb on - strandat 5351.261 kb on - strandat 5351.273 kb on - strandat 5351.354 kb on - strandat 5351.354 kb on - strandat 5351.501 kb on + strandat 5351.502 kb on - strandat 5351.502 kb on - strandat 5351.522 kb on + strandat 5351.523 kb on - strandat 5351.544 kb on - strandat 5351.547 kb on + strandat 5351.556 kb on + strandat 5351.588 kb on + strand, within CA265_RS21780at 5351.592 kb on + strand, within CA265_RS21780at 5351.592 kb on + strand, within CA265_RS21780at 5351.602 kb on + strand, within CA265_RS21780at 5351.653 kb on + strand, within CA265_RS21780at 5351.661 kb on + strand, within CA265_RS21780at 5351.728 kb on + strand, within CA265_RS21780at 5351.728 kb on + strand, within CA265_RS21780at 5351.729 kb on - strand, within CA265_RS21780at 5351.729 kb on - strand, within CA265_RS21780at 5351.839 kb on + strand, within CA265_RS21780at 5351.840 kb on - strand, within CA265_RS21780at 5351.841 kb on + strand, within CA265_RS21780at 5351.852 kb on + strand, within CA265_RS21780at 5351.896 kb on + strand, within CA265_RS21780at 5351.898 kb on + strand, within CA265_RS21780at 5351.899 kb on - strand, within CA265_RS21780at 5351.899 kb on - strand, within CA265_RS21780at 5351.949 kb on + strand, within CA265_RS21780at 5351.981 kb on + strand, within CA265_RS21780at 5351.986 kb on - strand, within CA265_RS21780at 5352.051 kb on + strand, within CA265_RS21780at 5352.051 kb on + strand, within CA265_RS21780at 5352.052 kb on - strand, within CA265_RS21780at 5352.052 kb on - strand, within CA265_RS21780at 5352.081 kb on + strand, within CA265_RS21780

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A
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5,349,199 - CA265_RS21770 0.28 -0.5
5,349,208 + CA265_RS21770 0.28 -0.4
5,349,208 + CA265_RS21770 0.28 -0.5
5,349,240 + CA265_RS21770 0.31 +0.6
5,349,329 - CA265_RS21770 0.39 -2.8
5,349,332 - CA265_RS21770 0.39 +0.4
5,349,343 + CA265_RS21770 0.40 +0.1
5,349,344 - CA265_RS21770 0.40 -1.6
5,349,344 - CA265_RS21770 0.40 +0.1
5,349,410 - CA265_RS21770 0.46 +0.3
5,349,461 - CA265_RS21770 0.50 -0.8
5,349,477 + CA265_RS21770 0.51 -0.1
5,349,478 - CA265_RS21770 0.51 +0.2
5,349,552 - CA265_RS21770 0.58 +0.2
5,349,552 - CA265_RS21770 0.58 -0.6
5,349,553 + CA265_RS21770 0.58 +0.4
5,349,554 - CA265_RS21770 0.58 -1.1
5,349,554 - CA265_RS21770 0.58 +0.8
5,349,592 - CA265_RS21770 0.61 -0.2
5,349,600 + CA265_RS21770 0.62 -0.2
5,349,601 - CA265_RS21770 0.62 -0.5
5,349,677 - CA265_RS21770 0.68 +0.2
5,349,677 - CA265_RS21770 0.68 +0.3
5,349,730 - CA265_RS21770 0.73 -0.3
5,349,776 + CA265_RS21770 0.77 -0.8
5,349,777 - CA265_RS21770 0.77 -0.1
5,349,807 + CA265_RS21770 0.79 -1.2
5,349,807 + CA265_RS21770 0.79 +1.5
5,349,808 - CA265_RS21770 0.79 -0.4
5,349,854 - CA265_RS21770 0.83 +0.1
5,349,856 + CA265_RS21770 0.84 -0.2
5,349,857 - CA265_RS21770 0.84 +0.6
5,349,857 - CA265_RS21770 0.84 -0.1
5,349,906 + CA265_RS21770 0.88 -0.3
5,349,907 - CA265_RS21770 0.88 +0.0
5,349,948 + -0.9
5,349,948 + -0.3
5,349,949 - +1.4
5,349,964 + +0.1
5,349,994 + +0.6
5,349,995 - -0.3
5,350,064 + -0.3
5,350,158 + -0.6
5,350,159 - +0.3
5,350,181 - -0.7
5,350,192 - -0.1
5,350,192 - -1.4
5,350,192 - +0.6
5,350,215 + -0.7
5,350,302 + CA265_RS21775 0.11 +1.7
5,350,307 - CA265_RS21775 0.12 -1.0
5,350,350 + CA265_RS21775 0.17 -0.8
5,350,351 - CA265_RS21775 0.17 +0.3
5,350,367 + CA265_RS21775 0.19 +0.3
5,350,368 - CA265_RS21775 0.19 -2.0
5,350,430 - CA265_RS21775 0.25 -0.9
5,350,447 - CA265_RS21775 0.27 -0.2
5,350,453 - CA265_RS21775 0.28 -0.2
5,350,495 - CA265_RS21775 0.33 -0.7
5,350,508 + CA265_RS21775 0.34 +0.9
5,350,556 + CA265_RS21775 0.39 +1.4
5,350,557 - CA265_RS21775 0.39 +0.8
5,350,557 - CA265_RS21775 0.39 +0.5
5,350,725 + CA265_RS21775 0.58 +1.0
5,350,805 + CA265_RS21775 0.67 +3.1
5,350,864 + CA265_RS21775 0.73 +0.7
5,350,864 + CA265_RS21775 0.73 +0.7
5,350,914 - CA265_RS21775 0.79 +0.9
5,350,960 - CA265_RS21775 0.84 +0.1
5,350,971 - CA265_RS21775 0.85 +0.3
5,351,008 - CA265_RS21775 0.89 -1.0
5,351,072 + +0.2
5,351,124 - +0.7
5,351,261 - +0.3
5,351,273 - -1.6
5,351,354 - +0.7
5,351,354 - -1.0
5,351,501 + +0.3
5,351,502 - -0.2
5,351,502 - -0.5
5,351,522 + -0.4
5,351,523 - +0.3
5,351,544 - +0.7
5,351,547 + +0.6
5,351,556 + +0.0
5,351,588 + CA265_RS21780 0.12 -0.8
5,351,592 + CA265_RS21780 0.12 +0.4
5,351,592 + CA265_RS21780 0.12 -0.5
5,351,602 + CA265_RS21780 0.13 +0.4
5,351,653 + CA265_RS21780 0.17 -0.4
5,351,661 + CA265_RS21780 0.18 +0.8
5,351,728 + CA265_RS21780 0.24 -0.4
5,351,728 + CA265_RS21780 0.24 -0.3
5,351,729 - CA265_RS21780 0.24 -0.1
5,351,729 - CA265_RS21780 0.24 +0.3
5,351,839 + CA265_RS21780 0.33 +1.0
5,351,840 - CA265_RS21780 0.33 -1.0
5,351,841 + CA265_RS21780 0.33 +0.0
5,351,852 + CA265_RS21780 0.34 +0.6
5,351,896 + CA265_RS21780 0.38 +1.3
5,351,898 + CA265_RS21780 0.38 +0.2
5,351,899 - CA265_RS21780 0.38 -0.5
5,351,899 - CA265_RS21780 0.38 +0.2
5,351,949 + CA265_RS21780 0.42 +0.1
5,351,981 + CA265_RS21780 0.45 +1.0
5,351,986 - CA265_RS21780 0.45 +0.1
5,352,051 + CA265_RS21780 0.51 +0.4
5,352,051 + CA265_RS21780 0.51 +0.5
5,352,052 - CA265_RS21780 0.51 -0.2
5,352,052 - CA265_RS21780 0.51 +0.2
5,352,081 + CA265_RS21780 0.53 -0.6

Or see this region's nucleotide sequence