Strain Fitness in Pedobacter sp. GW460-11-11-14-LB5 around CA265_RS21435

Experiment: R2A

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntCA265_RS21425 and CA265_RS21430 are separated by 1 nucleotidesCA265_RS21430 and CA265_RS21435 are separated by 115 nucleotidesCA265_RS21435 and CA265_RS21440 are separated by 94 nucleotides CA265_RS21425: CA265_RS21425 - hypothetical protein, at 5,281,653 to 5,282,465 _RS21425 CA265_RS21430: CA265_RS21430 - hypothetical protein, at 5,282,467 to 5,283,003 _RS21430 CA265_RS21435: CA265_RS21435 - hypothetical protein, at 5,283,119 to 5,283,520 _RS21435 CA265_RS21440: CA265_RS21440 - peptidylprolyl isomerase, at 5,283,615 to 5,284,343 _RS21440 Position (kb) 5283 5284Strain fitness (log2 ratio) -2 -1 0 1 2at 5282.182 kb on + strand, within CA265_RS21425at 5282.283 kb on + strand, within CA265_RS21425at 5282.369 kb on + strand, within CA265_RS21425at 5282.369 kb on + strand, within CA265_RS21425at 5282.391 kb on + strandat 5282.392 kb on - strandat 5282.392 kb on - strandat 5282.395 kb on + strandat 5282.396 kb on - strandat 5282.420 kb on + strandat 5282.421 kb on - strandat 5282.422 kb on + strandat 5282.423 kb on - strandat 5282.468 kb on + strandat 5282.479 kb on + strandat 5282.486 kb on + strandat 5282.486 kb on + strandat 5282.532 kb on - strand, within CA265_RS21430at 5282.654 kb on + strand, within CA265_RS21430at 5282.698 kb on + strand, within CA265_RS21430at 5282.698 kb on + strand, within CA265_RS21430at 5282.698 kb on + strand, within CA265_RS21430at 5282.706 kb on + strand, within CA265_RS21430at 5282.784 kb on + strand, within CA265_RS21430at 5282.784 kb on + strand, within CA265_RS21430at 5282.921 kb on - strand, within CA265_RS21430at 5282.921 kb on - strand, within CA265_RS21430at 5282.987 kb on - strandat 5282.992 kb on + strandat 5282.993 kb on - strandat 5283.030 kb on - strandat 5283.069 kb on - strandat 5283.127 kb on + strandat 5283.281 kb on + strand, within CA265_RS21435at 5283.282 kb on - strand, within CA265_RS21435at 5283.282 kb on - strand, within CA265_RS21435at 5283.282 kb on - strand, within CA265_RS21435at 5283.305 kb on - strand, within CA265_RS21435at 5283.324 kb on - strand, within CA265_RS21435at 5283.450 kb on - strand, within CA265_RS21435at 5283.482 kb on + strandat 5283.551 kb on + strandat 5283.564 kb on + strandat 5283.590 kb on + strandat 5283.626 kb on - strandat 5283.631 kb on + strandat 5283.687 kb on + strandat 5283.692 kb on - strand, within CA265_RS21440at 5283.730 kb on + strand, within CA265_RS21440at 5283.733 kb on - strand, within CA265_RS21440at 5283.759 kb on - strand, within CA265_RS21440at 5283.809 kb on + strand, within CA265_RS21440at 5283.810 kb on - strand, within CA265_RS21440at 5283.828 kb on - strand, within CA265_RS21440at 5283.855 kb on - strand, within CA265_RS21440at 5283.896 kb on + strand, within CA265_RS21440at 5283.900 kb on + strand, within CA265_RS21440at 5283.902 kb on + strand, within CA265_RS21440at 5284.108 kb on + strand, within CA265_RS21440at 5284.111 kb on - strand, within CA265_RS21440at 5284.111 kb on - strand, within CA265_RS21440at 5284.112 kb on + strand, within CA265_RS21440at 5284.112 kb on + strand, within CA265_RS21440at 5284.139 kb on - strand, within CA265_RS21440at 5284.168 kb on + strand, within CA265_RS21440at 5284.169 kb on - strand, within CA265_RS21440at 5284.184 kb on + strand, within CA265_RS21440at 5284.261 kb on + strand, within CA265_RS21440at 5284.289 kb on - strandat 5284.322 kb on + strandat 5284.341 kb on + strandat 5284.362 kb on + strandat 5284.403 kb on - strandat 5284.407 kb on + strandat 5284.408 kb on - strandat 5284.490 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction R2A
remove
5,282,182 + CA265_RS21425 0.65 +0.1
5,282,283 + CA265_RS21425 0.77 +0.1
5,282,369 + CA265_RS21425 0.88 +0.3
5,282,369 + CA265_RS21425 0.88 -0.6
5,282,391 + +0.1
5,282,392 - +0.7
5,282,392 - -0.4
5,282,395 + -0.1
5,282,396 - -0.3
5,282,420 + +0.6
5,282,421 - +0.2
5,282,422 + +0.2
5,282,423 - +0.5
5,282,468 + -0.2
5,282,479 + -0.2
5,282,486 + +1.1
5,282,486 + +0.1
5,282,532 - CA265_RS21430 0.12 -0.5
5,282,654 + CA265_RS21430 0.35 +1.2
5,282,698 + CA265_RS21430 0.43 +0.6
5,282,698 + CA265_RS21430 0.43 -0.9
5,282,698 + CA265_RS21430 0.43 +0.2
5,282,706 + CA265_RS21430 0.45 -1.2
5,282,784 + CA265_RS21430 0.59 +0.5
5,282,784 + CA265_RS21430 0.59 -0.3
5,282,921 - CA265_RS21430 0.85 +0.3
5,282,921 - CA265_RS21430 0.85 +0.1
5,282,987 - +0.1
5,282,992 + +0.9
5,282,993 - -0.2
5,283,030 - -0.0
5,283,069 - -0.5
5,283,127 + +0.1
5,283,281 + CA265_RS21435 0.40 -0.6
5,283,282 - CA265_RS21435 0.41 -0.5
5,283,282 - CA265_RS21435 0.41 +0.8
5,283,282 - CA265_RS21435 0.41 -0.1
5,283,305 - CA265_RS21435 0.46 +0.6
5,283,324 - CA265_RS21435 0.51 +0.8
5,283,450 - CA265_RS21435 0.82 +0.2
5,283,482 + +0.5
5,283,551 + -0.3
5,283,564 + +0.4
5,283,590 + +0.2
5,283,626 - -0.4
5,283,631 + -0.2
5,283,687 + -1.1
5,283,692 - CA265_RS21440 0.11 +0.2
5,283,730 + CA265_RS21440 0.16 +1.3
5,283,733 - CA265_RS21440 0.16 +0.4
5,283,759 - CA265_RS21440 0.20 +0.1
5,283,809 + CA265_RS21440 0.27 -0.5
5,283,810 - CA265_RS21440 0.27 +0.3
5,283,828 - CA265_RS21440 0.29 +0.9
5,283,855 - CA265_RS21440 0.33 -0.5
5,283,896 + CA265_RS21440 0.39 -0.4
5,283,900 + CA265_RS21440 0.39 -1.2
5,283,902 + CA265_RS21440 0.39 -0.1
5,284,108 + CA265_RS21440 0.68 -0.0
5,284,111 - CA265_RS21440 0.68 +0.5
5,284,111 - CA265_RS21440 0.68 -0.4
5,284,112 + CA265_RS21440 0.68 -0.7
5,284,112 + CA265_RS21440 0.68 +1.1
5,284,139 - CA265_RS21440 0.72 +0.2
5,284,168 + CA265_RS21440 0.76 -0.3
5,284,169 - CA265_RS21440 0.76 -0.5
5,284,184 + CA265_RS21440 0.78 -1.0
5,284,261 + CA265_RS21440 0.89 -0.7
5,284,289 - +0.2
5,284,322 + +1.7
5,284,341 + +2.1
5,284,362 + -2.2
5,284,403 - +0.1
5,284,407 + +0.2
5,284,408 - +0.4
5,284,490 - -0.2

Or see this region's nucleotide sequence