Experiment: R2A
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA265_RS20915 and CA265_RS20920 are separated by 231 nucleotides CA265_RS20920 and CA265_RS20925 are separated by 9 nucleotides CA265_RS20925 and CA265_RS20930 are separated by 29 nucleotides
CA265_RS20915: CA265_RS20915 - 50S ribosomal protein L19, at 5,157,083 to 5,157,430
_RS20915
CA265_RS20920: CA265_RS20920 - hypothetical protein, at 5,157,662 to 5,158,151
_RS20920
CA265_RS20925: CA265_RS20925 - hypothetical protein, at 5,158,161 to 5,158,643
_RS20925
CA265_RS20930: CA265_RS20930 - hypothetical protein, at 5,158,673 to 5,159,632
_RS20930
Position (kb) 5158
5159 Strain fitness (log2 ratio) -1
0
1
2 at 5157.596 kb on - strand at 5157.664 kb on - strand at 5157.707 kb on - strand at 5157.722 kb on - strand, within CA265_RS20920 at 5157.761 kb on + strand, within CA265_RS20920 at 5157.764 kb on - strand, within CA265_RS20920 at 5157.764 kb on - strand, within CA265_RS20920 at 5157.764 kb on - strand, within CA265_RS20920 at 5157.805 kb on + strand, within CA265_RS20920 at 5157.806 kb on - strand, within CA265_RS20920 at 5157.843 kb on + strand, within CA265_RS20920 at 5157.886 kb on + strand, within CA265_RS20920 at 5157.892 kb on + strand, within CA265_RS20920 at 5157.892 kb on + strand, within CA265_RS20920 at 5157.893 kb on - strand, within CA265_RS20920 at 5157.915 kb on - strand, within CA265_RS20920 at 5157.922 kb on + strand, within CA265_RS20920 at 5158.029 kb on + strand, within CA265_RS20920 at 5158.101 kb on - strand, within CA265_RS20920 at 5158.153 kb on - strand at 5158.162 kb on + strand at 5158.171 kb on + strand at 5158.254 kb on + strand, within CA265_RS20925 at 5158.254 kb on + strand, within CA265_RS20925 at 5158.254 kb on + strand, within CA265_RS20925 at 5158.254 kb on + strand, within CA265_RS20925 at 5158.255 kb on - strand, within CA265_RS20925 at 5158.364 kb on - strand, within CA265_RS20925 at 5158.433 kb on + strand, within CA265_RS20925 at 5158.443 kb on + strand, within CA265_RS20925 at 5158.444 kb on - strand, within CA265_RS20925 at 5158.508 kb on + strand, within CA265_RS20925 at 5158.543 kb on + strand, within CA265_RS20925 at 5158.543 kb on + strand, within CA265_RS20925 at 5158.553 kb on - strand, within CA265_RS20925 at 5158.624 kb on - strand at 5158.801 kb on + strand, within CA265_RS20930 at 5158.808 kb on - strand, within CA265_RS20930 at 5158.876 kb on + strand, within CA265_RS20930 at 5158.925 kb on - strand, within CA265_RS20930 at 5158.968 kb on + strand, within CA265_RS20930 at 5158.968 kb on + strand, within CA265_RS20930 at 5158.969 kb on - strand, within CA265_RS20930 at 5158.969 kb on - strand, within CA265_RS20930 at 5159.009 kb on + strand, within CA265_RS20930 at 5159.012 kb on - strand, within CA265_RS20930 at 5159.057 kb on - strand, within CA265_RS20930 at 5159.077 kb on - strand, within CA265_RS20930 at 5159.082 kb on - strand, within CA265_RS20930 at 5159.125 kb on + strand, within CA265_RS20930 at 5159.139 kb on - strand, within CA265_RS20930 at 5159.139 kb on - strand, within CA265_RS20930 at 5159.179 kb on - strand, within CA265_RS20930 at 5159.217 kb on + strand, within CA265_RS20930 at 5159.266 kb on - strand, within CA265_RS20930 at 5159.269 kb on + strand, within CA265_RS20930 at 5159.280 kb on + strand, within CA265_RS20930 at 5159.280 kb on + strand, within CA265_RS20930 at 5159.302 kb on + strand, within CA265_RS20930 at 5159.382 kb on + strand, within CA265_RS20930 at 5159.382 kb on + strand, within CA265_RS20930 at 5159.383 kb on - strand, within CA265_RS20930 at 5159.383 kb on - strand, within CA265_RS20930 at 5159.384 kb on + strand, within CA265_RS20930 at 5159.384 kb on + strand, within CA265_RS20930 at 5159.384 kb on + strand, within CA265_RS20930 at 5159.385 kb on - strand at 5159.396 kb on - strand, within CA265_RS20930 at 5159.396 kb on - strand, within CA265_RS20930 at 5159.453 kb on + strand, within CA265_RS20930 at 5159.453 kb on + strand, within CA265_RS20930 at 5159.465 kb on - strand, within CA265_RS20930 at 5159.471 kb on - strand, within CA265_RS20930 at 5159.525 kb on - strand, within CA265_RS20930 at 5159.584 kb on + strand at 5159.594 kb on - strand at 5159.594 kb on - strand at 5159.616 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction R2A remove 5,157,596 - +0.3 5,157,664 - -0.4 5,157,707 - +0.3 5,157,722 - CA265_RS20920 0.12 +0.7 5,157,761 + CA265_RS20920 0.20 -0.5 5,157,764 - CA265_RS20920 0.21 -0.1 5,157,764 - CA265_RS20920 0.21 -1.1 5,157,764 - CA265_RS20920 0.21 +0.1 5,157,805 + CA265_RS20920 0.29 +0.8 5,157,806 - CA265_RS20920 0.29 +0.0 5,157,843 + CA265_RS20920 0.37 +0.3 5,157,886 + CA265_RS20920 0.46 +0.4 5,157,892 + CA265_RS20920 0.47 -0.6 5,157,892 + CA265_RS20920 0.47 -0.4 5,157,893 - CA265_RS20920 0.47 -0.0 5,157,915 - CA265_RS20920 0.52 -0.7 5,157,922 + CA265_RS20920 0.53 +0.0 5,158,029 + CA265_RS20920 0.75 +0.3 5,158,101 - CA265_RS20920 0.90 -0.2 5,158,153 - -1.7 5,158,162 + +0.2 5,158,171 + +0.2 5,158,254 + CA265_RS20925 0.19 +2.4 5,158,254 + CA265_RS20925 0.19 +0.8 5,158,254 + CA265_RS20925 0.19 +0.1 5,158,254 + CA265_RS20925 0.19 +1.4 5,158,255 - CA265_RS20925 0.19 -0.1 5,158,364 - CA265_RS20925 0.42 +0.6 5,158,433 + CA265_RS20925 0.56 +0.5 5,158,443 + CA265_RS20925 0.58 +0.2 5,158,444 - CA265_RS20925 0.59 -0.9 5,158,508 + CA265_RS20925 0.72 +0.7 5,158,543 + CA265_RS20925 0.79 +0.1 5,158,543 + CA265_RS20925 0.79 -0.3 5,158,553 - CA265_RS20925 0.81 +0.2 5,158,624 - +1.5 5,158,801 + CA265_RS20930 0.13 +0.6 5,158,808 - CA265_RS20930 0.14 +0.2 5,158,876 + CA265_RS20930 0.21 +0.8 5,158,925 - CA265_RS20930 0.26 -0.2 5,158,968 + CA265_RS20930 0.31 -0.1 5,158,968 + CA265_RS20930 0.31 +0.7 5,158,969 - CA265_RS20930 0.31 -0.8 5,158,969 - CA265_RS20930 0.31 -0.3 5,159,009 + CA265_RS20930 0.35 -0.1 5,159,012 - CA265_RS20930 0.35 -0.2 5,159,057 - CA265_RS20930 0.40 -0.4 5,159,077 - CA265_RS20930 0.42 +0.4 5,159,082 - CA265_RS20930 0.43 -0.7 5,159,125 + CA265_RS20930 0.47 +0.7 5,159,139 - CA265_RS20930 0.49 +0.1 5,159,139 - CA265_RS20930 0.49 +0.7 5,159,179 - CA265_RS20930 0.53 -0.7 5,159,217 + CA265_RS20930 0.57 +1.0 5,159,266 - CA265_RS20930 0.62 -0.0 5,159,269 + CA265_RS20930 0.62 +1.5 5,159,280 + CA265_RS20930 0.63 -1.2 5,159,280 + CA265_RS20930 0.63 +0.3 5,159,302 + CA265_RS20930 0.66 +0.8 5,159,382 + CA265_RS20930 0.74 +0.5 5,159,382 + CA265_RS20930 0.74 -1.3 5,159,383 - CA265_RS20930 0.74 +0.5 5,159,383 - CA265_RS20930 0.74 +0.9 5,159,384 + CA265_RS20930 0.74 +0.2 5,159,384 + CA265_RS20930 0.74 +0.7 5,159,384 + CA265_RS20930 0.74 -0.4 5,159,385 - -0.2 5,159,396 - CA265_RS20930 0.75 -0.8 5,159,396 - CA265_RS20930 0.75 -0.0 5,159,453 + CA265_RS20930 0.81 +0.6 5,159,453 + CA265_RS20930 0.81 -0.1 5,159,465 - CA265_RS20930 0.82 -1.5 5,159,471 - CA265_RS20930 0.83 +0.0 5,159,525 - CA265_RS20930 0.89 -0.8 5,159,584 + +1.1 5,159,594 - +0.8 5,159,594 - -1.4 5,159,616 - -0.1
Or see this region's nucleotide sequence