Experiment: R2A
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA265_RS20545 and CA265_RS20550 are separated by 200 nucleotides CA265_RS20550 and CA265_RS20555 are separated by 138 nucleotides
CA265_RS20545: CA265_RS20545 - 2-amino-3-ketobutyrate CoA ligase, at 5,083,191 to 5,084,453
_RS20545
CA265_RS20550: CA265_RS20550 - hypothetical protein, at 5,084,654 to 5,085,283
_RS20550
CA265_RS20555: CA265_RS20555 - galactose-1-epimerase, at 5,085,422 to 5,086,513
_RS20555
Position (kb) 5084
5085
5086 Strain fitness (log2 ratio) -2
-1
0
1
2 at 5083.682 kb on + strand, within CA265_RS20545 at 5083.706 kb on - strand, within CA265_RS20545 at 5083.764 kb on + strand, within CA265_RS20545 at 5083.765 kb on - strand, within CA265_RS20545 at 5083.770 kb on - strand, within CA265_RS20545 at 5083.774 kb on + strand, within CA265_RS20545 at 5083.775 kb on - strand, within CA265_RS20545 at 5083.775 kb on - strand, within CA265_RS20545 at 5083.784 kb on - strand, within CA265_RS20545 at 5083.871 kb on + strand, within CA265_RS20545 at 5083.919 kb on + strand, within CA265_RS20545 at 5083.986 kb on - strand, within CA265_RS20545 at 5084.063 kb on + strand, within CA265_RS20545 at 5084.064 kb on - strand, within CA265_RS20545 at 5084.327 kb on - strand at 5084.353 kb on + strand at 5084.374 kb on + strand at 5084.424 kb on - strand at 5084.482 kb on + strand at 5084.569 kb on + strand at 5084.569 kb on + strand at 5084.569 kb on + strand at 5084.757 kb on + strand, within CA265_RS20550 at 5084.784 kb on + strand, within CA265_RS20550 at 5084.907 kb on - strand, within CA265_RS20550 at 5084.944 kb on + strand, within CA265_RS20550 at 5084.945 kb on - strand, within CA265_RS20550 at 5084.974 kb on + strand, within CA265_RS20550 at 5084.989 kb on + strand, within CA265_RS20550 at 5085.070 kb on - strand, within CA265_RS20550 at 5085.092 kb on - strand, within CA265_RS20550 at 5085.153 kb on + strand, within CA265_RS20550 at 5085.163 kb on - strand, within CA265_RS20550 at 5085.197 kb on - strand, within CA265_RS20550 at 5085.206 kb on + strand, within CA265_RS20550 at 5085.271 kb on + strand at 5085.271 kb on + strand at 5085.283 kb on + strand at 5085.284 kb on - strand at 5085.284 kb on - strand at 5085.314 kb on + strand at 5085.327 kb on + strand at 5085.403 kb on + strand at 5085.444 kb on + strand at 5085.715 kb on + strand, within CA265_RS20555 at 5085.715 kb on + strand, within CA265_RS20555 at 5085.812 kb on + strand, within CA265_RS20555 at 5085.975 kb on + strand, within CA265_RS20555 at 5085.980 kb on + strand, within CA265_RS20555 at 5086.009 kb on + strand, within CA265_RS20555 at 5086.076 kb on + strand, within CA265_RS20555 at 5086.165 kb on + strand, within CA265_RS20555 at 5086.171 kb on + strand, within CA265_RS20555
Per-strain Table
Position Strand Gene LocusTag Fraction R2A remove 5,083,682 + CA265_RS20545 0.39 +0.2 5,083,706 - CA265_RS20545 0.41 +0.4 5,083,764 + CA265_RS20545 0.45 -0.3 5,083,765 - CA265_RS20545 0.45 +0.2 5,083,770 - CA265_RS20545 0.46 -0.9 5,083,774 + CA265_RS20545 0.46 +1.6 5,083,775 - CA265_RS20545 0.46 -0.2 5,083,775 - CA265_RS20545 0.46 -0.1 5,083,784 - CA265_RS20545 0.47 -1.9 5,083,871 + CA265_RS20545 0.54 -0.1 5,083,919 + CA265_RS20545 0.58 -0.6 5,083,986 - CA265_RS20545 0.63 -0.4 5,084,063 + CA265_RS20545 0.69 -0.4 5,084,064 - CA265_RS20545 0.69 -0.1 5,084,327 - -1.4 5,084,353 + +0.7 5,084,374 + -0.3 5,084,424 - +0.7 5,084,482 + +1.2 5,084,569 + +0.2 5,084,569 + -0.1 5,084,569 + -0.6 5,084,757 + CA265_RS20550 0.16 -0.4 5,084,784 + CA265_RS20550 0.21 +0.6 5,084,907 - CA265_RS20550 0.40 -0.7 5,084,944 + CA265_RS20550 0.46 +0.5 5,084,945 - CA265_RS20550 0.46 +0.8 5,084,974 + CA265_RS20550 0.51 -0.6 5,084,989 + CA265_RS20550 0.53 -0.4 5,085,070 - CA265_RS20550 0.66 +0.3 5,085,092 - CA265_RS20550 0.70 +1.0 5,085,153 + CA265_RS20550 0.79 +1.2 5,085,163 - CA265_RS20550 0.81 +2.4 5,085,197 - CA265_RS20550 0.86 -1.3 5,085,206 + CA265_RS20550 0.88 -0.1 5,085,271 + -2.1 5,085,271 + -0.3 5,085,283 + +0.8 5,085,284 - -1.4 5,085,284 - +1.0 5,085,314 + +2.1 5,085,327 + +1.6 5,085,403 + +0.0 5,085,444 + -0.3 5,085,715 + CA265_RS20555 0.27 -0.3 5,085,715 + CA265_RS20555 0.27 +0.4 5,085,812 + CA265_RS20555 0.36 +0.1 5,085,975 + CA265_RS20555 0.51 +0.9 5,085,980 + CA265_RS20555 0.51 +0.2 5,086,009 + CA265_RS20555 0.54 -0.0 5,086,076 + CA265_RS20555 0.60 +0.1 5,086,165 + CA265_RS20555 0.68 -0.1 5,086,171 + CA265_RS20555 0.69 -0.7
Or see this region's nucleotide sequence