Experiment: R2A
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA265_RS20345 and CA265_RS20350 are separated by 27 nucleotides CA265_RS20350 and CA265_RS20355 overlap by 32 nucleotides CA265_RS20355 and CA265_RS20360 are separated by 1 nucleotides
CA265_RS20345: CA265_RS20345 - UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase, at 5,034,155 to 5,035,453
_RS20345
CA265_RS20350: CA265_RS20350 - gliding motility lipoprotein GldH, at 5,035,481 to 5,035,963
_RS20350
CA265_RS20355: CA265_RS20355 - hypothetical protein, at 5,035,932 to 5,037,464
_RS20355
CA265_RS20360: CA265_RS20360 - hypothetical protein, at 5,037,466 to 5,038,614
_RS20360
Position (kb) 5035
5036
5037
5038 Strain fitness (log2 ratio) -1
0
1 at 5035.457 kb on - strand at 5035.482 kb on + strand at 5035.482 kb on + strand at 5035.483 kb on - strand at 5035.483 kb on - strand at 5035.483 kb on - strand at 5035.534 kb on + strand, within CA265_RS20350 at 5035.534 kb on + strand, within CA265_RS20350 at 5035.664 kb on - strand, within CA265_RS20350 at 5035.693 kb on + strand, within CA265_RS20350 at 5035.703 kb on - strand, within CA265_RS20350 at 5035.721 kb on + strand, within CA265_RS20350 at 5035.722 kb on - strand, within CA265_RS20350 at 5035.724 kb on - strand, within CA265_RS20350 at 5035.736 kb on - strand, within CA265_RS20350 at 5035.736 kb on - strand, within CA265_RS20350 at 5035.814 kb on - strand, within CA265_RS20350 at 5035.876 kb on + strand, within CA265_RS20350 at 5035.885 kb on + strand, within CA265_RS20350 at 5035.901 kb on - strand, within CA265_RS20350 at 5035.950 kb on - strand at 5035.968 kb on - strand at 5035.983 kb on - strand at 5035.985 kb on + strand at 5036.034 kb on - strand at 5036.097 kb on - strand, within CA265_RS20355 at 5036.252 kb on + strand, within CA265_RS20355 at 5036.331 kb on - strand, within CA265_RS20355 at 5037.476 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction R2A remove 5,035,457 - +0.5 5,035,482 + -0.9 5,035,482 + -0.2 5,035,483 - +0.6 5,035,483 - -0.2 5,035,483 - +0.5 5,035,534 + CA265_RS20350 0.11 -0.1 5,035,534 + CA265_RS20350 0.11 -0.4 5,035,664 - CA265_RS20350 0.38 -0.7 5,035,693 + CA265_RS20350 0.44 +1.0 5,035,703 - CA265_RS20350 0.46 +0.4 5,035,721 + CA265_RS20350 0.50 -1.4 5,035,722 - CA265_RS20350 0.50 +1.0 5,035,724 - CA265_RS20350 0.50 -0.6 5,035,736 - CA265_RS20350 0.53 -0.3 5,035,736 - CA265_RS20350 0.53 -0.2 5,035,814 - CA265_RS20350 0.69 +0.0 5,035,876 + CA265_RS20350 0.82 -0.4 5,035,885 + CA265_RS20350 0.84 -1.4 5,035,901 - CA265_RS20350 0.87 -1.0 5,035,950 - -0.7 5,035,968 - +0.1 5,035,983 - -0.0 5,035,985 + -0.0 5,036,034 - +0.1 5,036,097 - CA265_RS20355 0.11 +0.6 5,036,252 + CA265_RS20355 0.21 -0.0 5,036,331 - CA265_RS20355 0.26 -0.8 5,037,476 - -0.1
Or see this region's nucleotide sequence