Experiment: R2A
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA265_RS18250 and CA265_RS18255 are separated by 2 nucleotides CA265_RS18255 and CA265_RS18260 are separated by 22 nucleotides CA265_RS18260 and CA265_RS18265 are separated by 161 nucleotides CA265_RS18265 and CA265_RS18270 are separated by 108 nucleotides CA265_RS18270 and CA265_RS18275 are separated by 44 nucleotides CA265_RS18275 and CA265_RS18280 overlap by 11 nucleotides
CA265_RS18250: CA265_RS18250 - hypothetical protein, at 4,551,753 to 4,552,316
_RS18250
CA265_RS18255: CA265_RS18255 - hypothetical protein, at 4,552,319 to 4,552,522
_RS18255
CA265_RS18260: CA265_RS18260 - hypothetical protein, at 4,552,545 to 4,552,934
_RS18260
CA265_RS18265: CA265_RS18265 - hypothetical protein, at 4,553,096 to 4,553,359
_RS18265
CA265_RS18270: CA265_RS18270 - hypothetical protein, at 4,553,468 to 4,553,779
_RS18270
CA265_RS18275: CA265_RS18275 - pyrophosphatase, at 4,553,824 to 4,554,153
_RS18275
CA265_RS18280: CA265_RS18280 - hypothetical protein, at 4,554,143 to 4,555,705
_RS18280
Position (kb) 4553
4554 Strain fitness (log2 ratio) -2
-1
0
1
2 at 4552.105 kb on - strand, within CA265_RS18250 at 4552.130 kb on + strand, within CA265_RS18250 at 4552.131 kb on - strand, within CA265_RS18250 at 4552.133 kb on - strand, within CA265_RS18250 at 4552.219 kb on + strand, within CA265_RS18250 at 4552.221 kb on + strand, within CA265_RS18250 at 4552.309 kb on - strand at 4552.334 kb on + strand at 4552.374 kb on + strand, within CA265_RS18255 at 4552.378 kb on + strand, within CA265_RS18255 at 4552.379 kb on - strand, within CA265_RS18255 at 4552.379 kb on - strand, within CA265_RS18255 at 4552.379 kb on - strand, within CA265_RS18255 at 4552.415 kb on - strand, within CA265_RS18255 at 4552.417 kb on - strand, within CA265_RS18255 at 4552.519 kb on - strand at 4552.541 kb on - strand at 4552.576 kb on - strand at 4552.576 kb on - strand at 4552.576 kb on - strand at 4552.701 kb on - strand, within CA265_RS18260 at 4552.898 kb on + strand at 4552.934 kb on + strand at 4552.935 kb on - strand at 4552.935 kb on - strand at 4552.935 kb on - strand at 4552.937 kb on - strand at 4553.002 kb on - strand at 4553.002 kb on - strand at 4553.025 kb on + strand at 4553.026 kb on - strand at 4553.026 kb on - strand at 4553.026 kb on - strand at 4553.053 kb on - strand at 4553.053 kb on - strand at 4553.058 kb on + strand at 4553.058 kb on + strand at 4553.117 kb on - strand at 4553.129 kb on + strand, within CA265_RS18265 at 4553.218 kb on + strand, within CA265_RS18265 at 4553.302 kb on + strand, within CA265_RS18265 at 4553.304 kb on + strand, within CA265_RS18265 at 4553.305 kb on - strand, within CA265_RS18265 at 4553.311 kb on - strand, within CA265_RS18265 at 4553.311 kb on - strand, within CA265_RS18265 at 4553.355 kb on - strand at 4553.445 kb on + strand at 4553.447 kb on + strand at 4553.449 kb on + strand at 4553.449 kb on + strand at 4553.456 kb on + strand at 4553.480 kb on - strand at 4553.496 kb on + strand at 4553.581 kb on + strand, within CA265_RS18270 at 4553.627 kb on + strand, within CA265_RS18270 at 4553.639 kb on + strand, within CA265_RS18270 at 4553.640 kb on - strand, within CA265_RS18270 at 4553.640 kb on - strand, within CA265_RS18270 at 4553.668 kb on + strand, within CA265_RS18270 at 4553.802 kb on + strand at 4553.953 kb on + strand, within CA265_RS18275 at 4553.953 kb on + strand, within CA265_RS18275 at 4553.954 kb on - strand, within CA265_RS18275 at 4553.954 kb on - strand, within CA265_RS18275 at 4553.954 kb on - strand, within CA265_RS18275 at 4553.954 kb on - strand, within CA265_RS18275 at 4554.017 kb on + strand, within CA265_RS18275 at 4554.021 kb on + strand at 4554.105 kb on + strand, within CA265_RS18275 at 4554.167 kb on + strand at 4554.167 kb on + strand at 4554.194 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction R2A remove 4,552,105 - CA265_RS18250 0.62 -0.3 4,552,130 + CA265_RS18250 0.67 +0.4 4,552,131 - CA265_RS18250 0.67 -0.6 4,552,133 - CA265_RS18250 0.67 -0.8 4,552,219 + CA265_RS18250 0.83 -0.8 4,552,221 + CA265_RS18250 0.83 +0.8 4,552,309 - -1.7 4,552,334 + +0.3 4,552,374 + CA265_RS18255 0.27 -0.3 4,552,378 + CA265_RS18255 0.29 -0.3 4,552,379 - CA265_RS18255 0.29 -1.8 4,552,379 - CA265_RS18255 0.29 -0.0 4,552,379 - CA265_RS18255 0.29 +0.6 4,552,415 - CA265_RS18255 0.47 -0.6 4,552,417 - CA265_RS18255 0.48 -0.5 4,552,519 - +0.1 4,552,541 - +0.0 4,552,576 - +0.7 4,552,576 - -1.0 4,552,576 - +0.3 4,552,701 - CA265_RS18260 0.40 +0.1 4,552,898 + +0.7 4,552,934 + -0.4 4,552,935 - +0.1 4,552,935 - -0.6 4,552,935 - +0.9 4,552,937 - +0.0 4,553,002 - -0.2 4,553,002 - -0.8 4,553,025 + +0.6 4,553,026 - -0.8 4,553,026 - +0.9 4,553,026 - -0.5 4,553,053 - -0.6 4,553,053 - -1.3 4,553,058 + -0.0 4,553,058 + +0.1 4,553,117 - -1.2 4,553,129 + CA265_RS18265 0.12 +0.1 4,553,218 + CA265_RS18265 0.46 +0.4 4,553,302 + CA265_RS18265 0.78 +0.2 4,553,304 + CA265_RS18265 0.79 -0.0 4,553,305 - CA265_RS18265 0.79 +0.4 4,553,311 - CA265_RS18265 0.81 +1.2 4,553,311 - CA265_RS18265 0.81 -0.7 4,553,355 - -0.4 4,553,445 + -0.1 4,553,447 + +0.6 4,553,449 + +1.0 4,553,449 + -1.9 4,553,456 + +0.6 4,553,480 - -0.6 4,553,496 + +1.1 4,553,581 + CA265_RS18270 0.36 +0.6 4,553,627 + CA265_RS18270 0.51 -0.0 4,553,639 + CA265_RS18270 0.55 -0.1 4,553,640 - CA265_RS18270 0.55 -0.4 4,553,640 - CA265_RS18270 0.55 +0.2 4,553,668 + CA265_RS18270 0.64 +1.7 4,553,802 + -1.0 4,553,953 + CA265_RS18275 0.39 +1.9 4,553,953 + CA265_RS18275 0.39 +1.6 4,553,954 - CA265_RS18275 0.39 -0.5 4,553,954 - CA265_RS18275 0.39 +0.7 4,553,954 - CA265_RS18275 0.39 +0.4 4,553,954 - CA265_RS18275 0.39 +0.1 4,554,017 + CA265_RS18275 0.58 -0.0 4,554,021 + +0.9 4,554,105 + CA265_RS18275 0.85 +0.4 4,554,167 + -1.1 4,554,167 + +0.0 4,554,194 - +0.2
Or see this region's nucleotide sequence